Wall clock time and date at job start Mon Mar 30 2020 07:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46845 * 111.00362 * 306.05124 * 12 2 1 14 14 C 1.53042 * 109.52365 * 185.83767 * 13 12 2 15 15 C 1.53113 * 109.27697 * 300.81713 * 14 13 12 16 16 C 1.53122 * 109.16066 * 57.65839 * 15 14 13 17 17 C 1.46849 * 110.99609 * 70.26002 * 12 2 1 18 18 H 1.09000 * 109.46006 * 294.17660 * 17 12 2 19 19 C 1.50701 * 109.46415 * 54.14342 * 17 12 2 20 20 N 1.29025 * 124.91717 * 225.00200 * 19 17 12 21 21 C 1.31778 * 117.12711 * 179.97438 * 20 19 17 22 22 C 1.33638 * 114.49938 * 359.97438 * 21 20 19 23 23 S 1.70971 * 124.91579 * 44.69711 * 19 17 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.45897 * 305.84882 * 13 12 2 29 29 H 1.08998 * 109.46242 * 65.83126 * 13 12 2 30 30 H 1.08998 * 109.50156 * 60.76021 * 14 13 12 31 31 H 1.09000 * 109.49620 * 180.87582 * 14 13 12 32 32 H 1.08998 * 109.52069 * 177.56014 * 15 14 13 33 33 H 1.09000 * 109.52303 * 297.75350 * 15 14 13 34 34 H 1.08994 * 109.50736 * 62.28611 * 16 15 14 35 35 H 1.09004 * 109.50459 * 182.36490 * 16 15 14 36 36 H 1.07996 * 122.74976 * 179.97438 * 21 20 19 37 37 H 1.08005 * 126.03909 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4344 -2.0350 -1.3078 14 6 2.0743 -2.7786 -2.4824 15 6 1.8317 -1.9902 -3.7723 16 6 2.4080 -0.5803 -3.6154 17 6 1.7585 0.0996 -2.4080 18 1 0.6828 0.1739 -2.5680 19 6 2.3371 1.4807 -2.2379 20 7 1.7313 2.5781 -2.5436 21 6 2.3826 3.7036 -2.3301 22 6 3.6057 3.5469 -1.8151 23 16 3.8886 1.8205 -1.6049 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 1.6177 -2.5866 -0.3856 29 1 0.3604 -1.9507 -1.4732 30 1 3.1464 -2.8754 -2.3112 31 1 1.6286 -3.7693 -2.5720 32 1 2.3228 -2.4939 -4.6049 33 1 0.7607 -1.9266 -3.9643 34 1 3.4853 -0.6424 -3.4621 35 1 2.2013 -0.0004 -4.5150 36 1 1.9623 4.6731 -2.5531 37 1 4.2975 4.3388 -1.5684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710560171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:19 Heat of formation + Delta-G solvation = 54.250976 kcal Electronic energy + Delta-G solvation = -19142.048009 eV Core-core repulsion = 16432.335267 eV Total energy + Delta-G solvation = -2709.712742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72517 -38.40580 -34.53841 -32.23238 -31.70105 -29.15467 -28.88714 -25.35667 -25.01309 -23.67279 -22.33291 -20.48642 -19.39632 -19.15345 -17.35916 -16.57152 -15.59177 -15.28781 -14.77715 -14.31492 -14.20460 -13.87350 -13.57042 -13.11828 -12.96166 -12.72784 -12.41202 -12.23023 -11.93939 -11.62715 -11.28083 -11.02273 -10.87303 -10.66316 -10.53445 -10.24396 -10.10272 -9.88829 -9.52121 -9.25449 -9.10291 -8.94208 -8.61585 -8.34813 -7.47497 -6.08142 -4.05552 1.08313 1.80538 2.25717 3.16099 3.24881 3.36947 3.38588 4.21803 4.38968 4.76816 5.09345 5.19653 5.22764 5.26853 5.42602 5.56610 5.58119 5.71022 5.80294 5.93600 6.01487 6.11778 6.15437 6.21356 6.25851 6.30973 6.38919 6.43682 6.52397 6.65409 6.72076 6.87791 7.14544 7.59711 7.81380 7.98558 8.10326 8.61682 8.99510 9.54740 11.04677 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.010524 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.945670 B = 2660.053251 C = 3786.314401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.178 3.822 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.084 0.916 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.879 3.121 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.514 5.514 13 C 0.063 3.937 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.105 4.105 17 C 0.151 3.849 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.488 5.488 21 C 0.033 3.967 22 C -0.291 4.291 23 S 0.188 5.812 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.095 0.905 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.168 0.832 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 2.918 -13.549 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.070 3.930 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.536 5.536 8 Si 0.709 3.291 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.239 5.239 13 C -0.065 4.065 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.144 4.144 17 C 0.039 3.961 18 H 0.081 0.919 19 C -0.211 4.211 20 N -0.203 5.203 21 C -0.119 4.119 22 C -0.431 4.431 23 S 0.443 5.557 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.324 2.215 -13.135 13.522 hybrid contribution -2.034 2.091 0.144 2.921 sum 0.290 4.306 -12.991 13.689 Atomic orbital electron populations 1.22805 1.01583 1.01009 0.99112 1.19874 0.88957 0.95398 0.88754 0.94304 1.20862 1.31499 1.13703 0.87508 0.89754 1.24848 0.95764 0.96312 0.95887 1.69868 1.45682 1.40206 0.97830 0.86998 0.80805 0.84295 0.76951 1.20726 1.22353 1.19522 1.62216 1.58985 1.02109 1.00549 1.22031 0.95508 0.89731 0.99216 1.21671 1.01996 0.97863 0.94243 1.21552 1.00549 0.95223 0.98077 1.21635 1.00958 0.95898 0.95915 1.20118 0.97812 0.85145 0.92997 0.91860 1.26950 0.95716 0.98179 1.00208 1.66259 1.35598 0.97416 1.21072 1.21629 0.91746 0.97179 1.01359 1.27211 1.03169 1.01076 1.11638 1.84296 1.16988 0.97965 1.56420 0.95169 0.93748 0.92371 0.92648 0.88711 0.95321 0.91125 0.92011 0.91978 0.92372 0.90916 0.91837 0.81537 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.19 7.92 37.16 0.29 -3.90 16 2 C 0.18 4.16 1.60 -68.86 -0.11 4.05 16 3 H 0.04 0.98 4.96 -51.93 -0.26 0.72 16 4 C -0.50 -13.53 8.46 -34.44 -0.29 -13.82 16 5 H 0.08 2.47 7.38 -52.49 -0.39 2.09 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.88 22.37 24.37 -169.99 -4.14 18.23 16 9 H -0.28 -6.99 6.87 56.52 0.39 -6.61 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 11 H -0.27 -6.84 6.53 56.52 0.37 -6.47 16 12 N -0.51 -10.17 4.23 -221.51 -0.94 -11.11 16 13 C 0.06 1.12 4.54 -3.83 -0.02 1.11 16 14 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 15 C -0.12 -1.47 6.00 -26.61 -0.16 -1.63 16 16 C -0.11 -1.49 5.36 -26.65 -0.14 -1.64 16 17 C 0.15 2.66 2.03 -68.87 -0.14 2.52 16 18 H 0.06 1.17 6.88 -51.93 -0.36 0.82 16 19 C 0.07 1.22 4.67 -13.46 -0.06 1.16 16 20 N -0.49 -8.97 10.54 -11.87 -0.13 -9.10 16 21 C 0.03 0.52 11.35 -19.19 -0.22 0.31 16 22 C -0.29 -4.31 11.37 29.12 0.33 -3.98 16 23 S 0.19 3.20 22.10 -107.50 -2.38 0.82 16 24 H 0.03 0.63 6.82 -51.93 -0.35 0.27 16 25 H 0.04 1.06 3.27 -51.93 -0.17 0.89 16 26 H 0.06 1.25 6.46 -51.93 -0.34 0.91 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.90 6.72 -51.93 -0.35 1.56 16 29 H 0.03 0.51 6.58 -51.93 -0.34 0.16 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.17 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.17 1.96 8.06 -52.48 -0.42 1.53 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -30.28 292.88 -8.28 -38.56 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.12 Total: 0.08 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.78 Total: -15.67 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.29 Total: -46.44 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.38 Total: 0.82 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.28 -8.28 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710560171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.812 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds