Wall clock time and date at job start Mon Mar 30 2020 07:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46845 * 111.00362 * 306.05124 * 12 2 1 14 14 C 1.53042 * 109.52365 * 185.83767 * 13 12 2 15 15 C 1.53113 * 109.27697 * 300.81713 * 14 13 12 16 16 C 1.53122 * 109.16066 * 57.65839 * 15 14 13 17 17 C 1.46849 * 110.99609 * 70.26002 * 12 2 1 18 18 H 1.09000 * 109.46006 * 294.17660 * 17 12 2 19 19 C 1.50701 * 109.46415 * 54.14342 * 17 12 2 20 20 N 1.29025 * 124.91717 * 225.00200 * 19 17 12 21 21 C 1.31778 * 117.12711 * 179.97438 * 20 19 17 22 22 C 1.33638 * 114.49938 * 359.97438 * 21 20 19 23 23 S 1.70971 * 124.91579 * 44.69711 * 19 17 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.45897 * 305.84882 * 13 12 2 29 29 H 1.08998 * 109.46242 * 65.83126 * 13 12 2 30 30 H 1.08998 * 109.50156 * 60.76021 * 14 13 12 31 31 H 1.09000 * 109.49620 * 180.87582 * 14 13 12 32 32 H 1.08998 * 109.52069 * 177.56014 * 15 14 13 33 33 H 1.09000 * 109.52303 * 297.75350 * 15 14 13 34 34 H 1.08994 * 109.50736 * 62.28611 * 16 15 14 35 35 H 1.09004 * 109.50459 * 182.36490 * 16 15 14 36 36 H 1.07996 * 122.74976 * 179.97438 * 21 20 19 37 37 H 1.08005 * 126.03909 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4344 -2.0350 -1.3078 14 6 2.0743 -2.7786 -2.4824 15 6 1.8317 -1.9902 -3.7723 16 6 2.4080 -0.5803 -3.6154 17 6 1.7585 0.0996 -2.4080 18 1 0.6828 0.1739 -2.5680 19 6 2.3371 1.4807 -2.2379 20 7 1.7313 2.5781 -2.5436 21 6 2.3826 3.7036 -2.3301 22 6 3.6057 3.5469 -1.8151 23 16 3.8886 1.8205 -1.6049 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 1.6177 -2.5866 -0.3856 29 1 0.3604 -1.9507 -1.4732 30 1 3.1464 -2.8754 -2.3112 31 1 1.6286 -3.7693 -2.5720 32 1 2.3228 -2.4939 -4.6049 33 1 0.7607 -1.9266 -3.9643 34 1 3.4853 -0.6424 -3.4621 35 1 2.2013 -0.0004 -4.5150 36 1 1.9623 4.6731 -2.5531 37 1 4.2975 4.3388 -1.5684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710560171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:19 Heat of formation + Delta-G solvation = 33.540171 kcal Electronic energy + Delta-G solvation = -19142.946097 eV Core-core repulsion = 16432.335267 eV Total energy + Delta-G solvation = -2710.610830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08031 -39.77088 -36.16652 -34.05828 -33.14086 -30.75384 -30.18995 -27.28852 -26.40494 -25.11781 -23.63301 -22.06230 -20.76776 -20.44136 -18.73392 -18.59441 -17.26601 -16.66952 -16.33499 -15.80637 -15.49742 -15.19724 -15.06353 -14.70383 -14.53220 -14.18335 -13.96383 -13.81142 -13.38268 -13.24350 -13.02796 -12.61942 -12.26430 -12.24253 -11.95578 -11.65187 -11.54489 -11.50640 -11.28862 -10.98258 -10.76910 -10.58254 -10.24708 -9.68034 -9.05118 -8.29568 -6.29019 -0.18314 0.53892 0.99440 1.21351 1.28210 1.35856 1.90351 2.26452 2.87899 3.05603 3.36682 3.92857 4.04500 4.10044 4.26177 4.34324 4.39976 4.40249 4.42935 4.48242 4.60569 4.62859 4.66821 4.87033 4.94067 5.02333 5.06925 5.14728 5.22477 5.26680 5.32775 5.39521 5.54742 5.62295 6.00565 6.36340 6.60400 6.76610 6.82477 7.34333 8.86917 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.010524 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.945670 B = 2660.053251 C = 3786.314401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.186 3.814 3 H 0.027 0.973 4 C -0.488 4.488 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.941 5.941 8 Si 0.934 3.066 9 H -0.271 1.271 10 H -0.295 1.295 11 H -0.267 1.267 12 N -0.521 5.521 13 C 0.061 3.939 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.100 4.100 17 C 0.153 3.847 18 H 0.055 0.945 19 C 0.047 3.953 20 N -0.506 5.506 21 C 0.017 3.983 22 C -0.272 4.272 23 S 0.157 5.843 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.265 0.735 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.199 0.801 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 4.042 -15.647 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.077 3.923 3 H 0.044 0.956 4 C -0.527 4.527 5 H 0.068 0.932 6 C -0.174 4.174 7 N -0.582 5.582 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.223 1.223 11 H -0.192 1.192 12 N -0.246 5.246 13 C -0.066 4.066 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.041 3.959 18 H 0.073 0.927 19 C -0.230 4.230 20 N -0.222 5.222 21 C -0.134 4.134 22 C -0.411 4.411 23 S 0.411 5.589 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.215 0.785 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.816 3.339 -15.263 15.729 hybrid contribution -1.810 1.742 0.758 2.624 sum 0.006 5.082 -14.505 15.369 Atomic orbital electron populations 1.22698 1.00691 1.01375 0.99175 1.19573 0.89417 0.94397 0.88896 0.95570 1.21054 1.30001 1.12387 0.89221 0.93155 1.25506 0.97231 0.98944 0.95730 1.69992 1.47722 1.42108 0.98378 0.86095 0.79663 0.81209 0.76752 1.19742 1.22263 1.19234 1.62113 1.59174 1.02843 1.00442 1.22047 0.96065 0.88897 0.99598 1.21624 1.01354 0.98666 0.93366 1.21547 1.01284 0.93987 0.97903 1.21643 1.00613 0.96826 0.94788 1.20209 0.97641 0.85204 0.92850 0.92738 1.27047 0.96179 0.98489 1.01270 1.66279 1.36344 0.98130 1.21427 1.22161 0.92100 0.97670 1.01424 1.27579 1.03397 1.00164 1.09995 1.84380 1.17067 1.00558 1.56909 0.93550 0.95015 0.91912 0.92593 0.91964 0.95005 0.91740 0.89774 0.89042 0.91633 0.91114 0.90308 0.78454 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.99 7.92 71.98 0.57 -7.42 16 2 C 0.19 8.71 1.60 44.17 0.07 8.78 16 3 H 0.03 1.32 4.96 -2.39 -0.01 1.31 16 4 C -0.49 -27.25 8.46 25.60 0.22 -27.04 16 5 H 0.05 3.10 7.38 -2.91 -0.02 3.08 16 6 C 0.02 1.37 5.45 84.66 0.46 1.83 16 7 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 8 Si 0.93 46.44 24.37 68.60 1.67 48.11 16 9 H -0.27 -12.97 6.87 99.48 0.68 -12.29 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 11 H -0.27 -13.05 6.53 99.48 0.65 -12.41 16 12 N -0.52 -20.55 4.23 -854.73 -3.61 -24.16 16 13 C 0.06 2.18 4.54 86.33 0.39 2.58 16 14 C -0.11 -2.97 6.09 30.65 0.19 -2.78 16 15 C -0.11 -2.43 6.00 30.67 0.18 -2.25 16 16 C -0.10 -2.62 5.36 30.65 0.16 -2.46 16 17 C 0.15 5.19 2.03 44.19 0.09 5.28 16 18 H 0.05 1.94 6.88 -2.39 -0.02 1.93 16 19 C 0.05 1.67 4.67 88.52 0.41 2.08 16 20 N -0.51 -17.66 10.54 -191.46 -2.02 -19.68 16 21 C 0.02 0.50 11.35 83.66 0.95 1.45 16 22 C -0.27 -7.35 11.37 66.78 0.76 -6.59 16 23 S 0.16 5.18 22.10 -56.49 -1.25 3.94 16 24 H 0.05 1.87 6.82 -2.39 -0.02 1.86 16 25 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 26 H 0.06 2.66 6.46 -2.38 -0.02 2.65 16 27 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 28 H 0.06 2.59 6.72 -2.39 -0.02 2.57 16 29 H 0.03 1.10 6.58 -2.39 -0.02 1.08 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.20 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.21 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -66.21 292.88 0.53 -65.68 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.98 Total: 10.49 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.46 Total: -26.53 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.33 Total: -101.68 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.25 Total: 3.94 kcal Total: -66.21 0.53 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710560171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.217 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds