Wall clock time and date at job start Mon Mar 30 2020 07:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46512 * 2 1 4 4 C 1.52995 * 109.47405 * 239.99944 * 2 1 3 5 5 C 1.50702 * 109.47246 * 159.27829 * 4 2 1 6 6 H 1.08005 * 119.99579 * 353.98822 * 5 4 2 7 7 C 1.37871 * 119.99959 * 173.98626 * 5 4 2 8 8 N 1.31510 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99587 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47427 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46969 * 120.00150 * 9 7 5 12 12 H 1.48505 * 109.47129 * 239.99604 * 9 7 5 13 13 N 1.46903 * 109.46923 * 119.99743 * 2 1 3 14 14 C 1.47845 * 111.00029 * 174.52871 * 13 2 1 15 15 C 1.54905 * 104.79684 * 146.36234 * 14 13 2 16 16 C 1.55147 * 101.65375 * 322.92923 * 15 14 13 17 17 C 1.47448 * 111.00043 * 295.36909 * 13 2 1 18 18 H 1.08999 * 109.88629 * 117.17157 * 17 13 2 19 19 C 1.50704 * 109.88843 * 356.15094 * 17 13 2 20 20 N 1.29023 * 124.91753 * 303.26890 * 19 17 13 21 21 C 1.31779 * 117.12977 * 180.26353 * 20 19 17 22 22 C 1.33643 * 114.49576 * 0.02562 * 21 20 19 23 23 S 1.70980 * 124.91485 * 123.57272 * 19 17 13 24 24 H 1.08997 * 109.47685 * 306.81117 * 1 2 3 25 25 H 1.09003 * 109.46697 * 66.81468 * 1 2 3 26 26 H 1.09002 * 109.46796 * 186.80751 * 1 2 3 27 27 H 1.09006 * 109.46910 * 279.27461 * 4 2 1 28 28 H 1.08998 * 109.47195 * 39.27830 * 4 2 1 29 29 H 0.96999 * 120.00298 * 179.97438 * 8 7 5 30 30 H 1.08990 * 110.37428 * 265.19582 * 14 13 2 31 31 H 1.09003 * 110.37034 * 27.53353 * 14 13 2 32 32 H 1.08993 * 110.99071 * 81.02243 * 15 14 13 33 33 H 1.08993 * 110.99009 * 204.80575 * 15 14 13 34 34 H 1.08995 * 110.70539 * 277.26828 * 16 15 14 35 35 H 1.09000 * 110.70602 * 154.03633 * 16 15 14 36 36 H 1.08001 * 122.75440 * 180.02562 * 21 20 19 37 37 H 1.08004 * 126.03328 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.4605 -0.3012 -1.5270 6 1 3.9177 0.4797 -0.9375 7 6 4.1761 -0.9137 -2.5338 8 7 3.6194 -1.8649 -3.2513 9 14 5.9364 -0.3924 -2.8786 10 1 6.3257 0.6890 -1.9383 11 1 6.8417 -1.5555 -2.6967 12 1 6.0416 0.1030 -4.2746 13 7 2.0197 -0.6925 1.1995 14 6 3.4917 -0.8272 1.1697 15 6 3.9287 -0.7208 2.6520 16 6 2.9403 0.3450 3.1945 17 6 1.6397 0.0374 2.4231 18 1 0.9808 -0.5800 3.0335 19 6 0.9440 1.3233 2.0578 20 7 1.4441 2.2463 1.3076 21 6 0.7015 3.3134 1.0919 22 6 -0.4913 3.2894 1.6942 23 16 -0.6194 1.7737 2.5835 24 1 -0.3634 0.6157 0.8227 25 1 -0.3633 0.4046 -0.9447 26 1 -0.3633 -1.0205 0.1218 27 1 2.0050 -1.7985 -1.0865 28 1 1.4112 -0.4617 -2.1008 29 1 4.1228 -2.2956 -3.9598 30 1 3.7758 -1.7959 0.7589 31 1 3.9347 -0.0213 0.5847 32 1 3.7980 -1.6725 3.1669 33 1 4.9592 -0.3747 2.7313 34 1 3.2947 1.3503 2.9671 35 1 2.7907 0.2213 4.2670 36 1 1.0299 4.1396 0.4788 37 1 -1.2441 4.0621 1.6437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710619371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:28 Heat of formation + Delta-G solvation = 76.357741 kcal Electronic energy + Delta-G solvation = -19169.184371 eV Core-core repulsion = 16460.430250 eV Total energy + Delta-G solvation = -2708.754121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47310 -38.00334 -34.11426 -32.32694 -31.07074 -28.52201 -28.31920 -26.94477 -24.76724 -23.12078 -21.55429 -20.58168 -19.56072 -19.24164 -17.42134 -16.46563 -15.62793 -15.40470 -14.97390 -14.78068 -14.30802 -13.41413 -13.36520 -12.85392 -12.75322 -12.39554 -11.84924 -11.59613 -11.43440 -11.35107 -11.28670 -11.16648 -10.81687 -10.54292 -10.47831 -10.34632 -10.22654 -10.17692 -9.50219 -9.32899 -8.95336 -8.63568 -8.35585 -8.30529 -7.37546 -5.93378 -3.92739 0.86765 1.50280 1.88530 3.03655 3.33264 3.41428 3.44994 4.26302 4.50353 4.74447 5.04228 5.10253 5.24614 5.25771 5.42095 5.55823 5.61582 5.78990 5.93163 6.00259 6.14125 6.17877 6.23837 6.32185 6.33200 6.44192 6.68798 6.87825 7.04476 7.07000 7.17302 7.58371 7.78472 7.83611 7.95871 8.05092 8.21609 8.49922 9.11270 9.67836 11.17824 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.006857 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.956584 B = 4082.680186 C = 4432.783395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.055 3.945 3 H 0.082 0.918 4 C 0.029 3.971 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.496 5.496 14 C 0.048 3.952 15 C -0.135 4.135 16 C -0.125 4.125 17 C 0.141 3.859 18 H 0.094 0.906 19 C 0.070 3.930 20 N -0.457 5.457 21 C 0.044 3.956 22 C -0.269 4.269 23 S 0.090 5.910 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.029 0.971 28 H 0.013 0.987 29 H 0.258 0.742 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.173 0.827 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 7.181 13.516 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.053 4.053 3 H 0.100 0.900 4 C -0.008 4.008 5 C -0.547 4.547 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.712 3.288 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.221 5.221 14 C -0.079 4.079 15 C -0.173 4.173 16 C -0.165 4.165 17 C 0.029 3.971 18 H 0.112 0.888 19 C -0.209 4.209 20 N -0.172 5.172 21 C -0.107 4.107 22 C -0.408 4.408 23 S 0.345 5.655 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.190 0.810 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.841 6.050 13.778 16.530 hybrid contribution 1.383 1.771 -1.090 2.498 sum -5.457 7.821 12.688 15.872 Atomic orbital electron populations 1.22472 0.97343 1.01516 1.00711 1.22593 0.92646 0.99029 0.91028 0.90040 1.19166 0.95303 0.96444 0.89902 1.21386 0.98046 1.19230 1.16044 0.92270 1.24970 0.97859 0.95227 0.96264 1.69976 1.36776 1.25142 1.21502 0.86669 0.85576 0.78485 0.78117 1.19759 1.21073 1.21208 1.64232 1.12871 1.44363 1.00653 1.23353 0.86694 1.04265 0.93553 1.22826 0.98379 0.98123 0.97998 1.22788 0.94327 1.00495 0.98909 1.21403 0.95532 0.85429 0.94735 0.88811 1.27684 0.94963 1.00137 0.98097 1.66340 1.35419 1.01021 1.14383 1.21889 0.90680 0.97040 1.01050 1.26906 1.03516 1.02538 1.07816 1.83902 1.19324 1.13154 1.49085 0.93634 0.93229 0.92725 0.95299 0.96875 0.93221 0.89792 0.90009 0.91392 0.91235 0.90760 0.91310 0.81043 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 8.70 37.16 0.32 -2.81 16 2 C 0.05 1.19 1.67 -67.71 -0.11 1.08 16 3 H 0.08 1.87 4.77 -51.93 -0.25 1.63 16 4 C 0.03 0.77 4.34 -27.88 -0.12 0.65 16 5 C -0.51 -14.10 6.97 -34.44 -0.24 -14.34 16 6 H 0.06 1.63 5.79 -52.48 -0.30 1.33 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 N -0.50 -9.78 5.02 -216.81 -1.09 -10.87 16 14 C 0.05 0.96 5.01 -2.30 -0.01 0.95 16 15 C -0.13 -2.07 7.08 -24.59 -0.17 -2.24 16 16 C -0.13 -1.80 6.46 -24.91 -0.16 -1.96 16 17 C 0.14 2.27 3.67 -67.87 -0.25 2.02 16 18 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 19 C 0.07 1.10 3.05 -13.46 -0.04 1.06 16 20 N -0.46 -7.81 7.36 -11.86 -0.09 -7.90 16 21 C 0.04 0.63 11.35 -19.18 -0.22 0.41 16 22 C -0.27 -3.25 11.37 29.12 0.33 -2.92 16 23 S 0.09 1.15 21.16 -107.50 -2.27 -1.12 16 24 H 0.05 0.77 3.00 -30.95 -0.09 0.68 16 25 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.83 8.12 -51.93 -0.42 0.40 16 28 H 0.01 0.37 7.86 -51.93 -0.41 -0.04 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.84 8.10 -51.93 -0.42 1.42 16 31 H 0.08 1.85 4.88 -51.93 -0.25 1.60 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -30.57 296.13 -9.10 -39.67 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.06 Total: 1.86 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.77 Total: -16.57 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.44 Total: -44.97 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.27 Total: -1.12 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.57 -9.10 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710619371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.029 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds