Wall clock time and date at job start Mon Mar 30 2020 07:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46512 * 2 1 4 4 C 1.52995 * 109.47405 * 239.99944 * 2 1 3 5 5 C 1.50702 * 109.47246 * 159.27829 * 4 2 1 6 6 H 1.08005 * 119.99579 * 353.98822 * 5 4 2 7 7 C 1.37871 * 119.99959 * 173.98626 * 5 4 2 8 8 N 1.31510 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99587 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47427 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46969 * 120.00150 * 9 7 5 12 12 H 1.48505 * 109.47129 * 239.99604 * 9 7 5 13 13 N 1.46903 * 109.46923 * 119.99743 * 2 1 3 14 14 C 1.47845 * 111.00029 * 174.52871 * 13 2 1 15 15 C 1.54905 * 104.79684 * 146.36234 * 14 13 2 16 16 C 1.55147 * 101.65375 * 322.92923 * 15 14 13 17 17 C 1.47448 * 111.00043 * 295.36909 * 13 2 1 18 18 H 1.08999 * 109.88629 * 117.17157 * 17 13 2 19 19 C 1.50704 * 109.88843 * 356.15094 * 17 13 2 20 20 N 1.29023 * 124.91753 * 303.26890 * 19 17 13 21 21 C 1.31779 * 117.12977 * 180.26353 * 20 19 17 22 22 C 1.33643 * 114.49576 * 0.02562 * 21 20 19 23 23 S 1.70980 * 124.91485 * 123.57272 * 19 17 13 24 24 H 1.08997 * 109.47685 * 306.81117 * 1 2 3 25 25 H 1.09003 * 109.46697 * 66.81468 * 1 2 3 26 26 H 1.09002 * 109.46796 * 186.80751 * 1 2 3 27 27 H 1.09006 * 109.46910 * 279.27461 * 4 2 1 28 28 H 1.08998 * 109.47195 * 39.27830 * 4 2 1 29 29 H 0.96999 * 120.00298 * 179.97438 * 8 7 5 30 30 H 1.08990 * 110.37428 * 265.19582 * 14 13 2 31 31 H 1.09003 * 110.37034 * 27.53353 * 14 13 2 32 32 H 1.08993 * 110.99071 * 81.02243 * 15 14 13 33 33 H 1.08993 * 110.99009 * 204.80575 * 15 14 13 34 34 H 1.08995 * 110.70539 * 277.26828 * 16 15 14 35 35 H 1.09000 * 110.70602 * 154.03633 * 16 15 14 36 36 H 1.08001 * 122.75440 * 180.02562 * 21 20 19 37 37 H 1.08004 * 126.03328 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.4605 -0.3012 -1.5270 6 1 3.9177 0.4797 -0.9375 7 6 4.1761 -0.9137 -2.5338 8 7 3.6194 -1.8649 -3.2513 9 14 5.9364 -0.3924 -2.8786 10 1 6.3257 0.6890 -1.9383 11 1 6.8417 -1.5555 -2.6967 12 1 6.0416 0.1030 -4.2746 13 7 2.0197 -0.6925 1.1995 14 6 3.4917 -0.8272 1.1697 15 6 3.9287 -0.7208 2.6520 16 6 2.9403 0.3450 3.1945 17 6 1.6397 0.0374 2.4231 18 1 0.9808 -0.5800 3.0335 19 6 0.9440 1.3233 2.0578 20 7 1.4441 2.2463 1.3076 21 6 0.7015 3.3134 1.0919 22 6 -0.4913 3.2894 1.6942 23 16 -0.6194 1.7737 2.5835 24 1 -0.3634 0.6157 0.8227 25 1 -0.3633 0.4046 -0.9447 26 1 -0.3633 -1.0205 0.1218 27 1 2.0050 -1.7985 -1.0865 28 1 1.4112 -0.4617 -2.1008 29 1 4.1228 -2.2956 -3.9598 30 1 3.7758 -1.7959 0.7589 31 1 3.9347 -0.0213 0.5847 32 1 3.7980 -1.6725 3.1669 33 1 4.9592 -0.3747 2.7313 34 1 3.2947 1.3503 2.9671 35 1 2.7907 0.2213 4.2670 36 1 1.0299 4.1396 0.4788 37 1 -1.2441 4.0621 1.6437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710619371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:28 Heat of formation + Delta-G solvation = 56.103669 kcal Electronic energy + Delta-G solvation = -19170.062654 eV Core-core repulsion = 16460.430250 eV Total energy + Delta-G solvation = -2709.632403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.74074 -39.31754 -35.91132 -34.23631 -32.41328 -30.09474 -29.65725 -28.69972 -26.05622 -24.98806 -23.01608 -21.92471 -21.15117 -20.39805 -18.68122 -18.53455 -17.08884 -16.77321 -16.41458 -16.12649 -15.99512 -14.84266 -14.54133 -14.38793 -14.34083 -14.06642 -13.35947 -13.27159 -13.17012 -13.03319 -12.67428 -12.48967 -12.42256 -12.36989 -12.15526 -11.98008 -11.75897 -11.59320 -11.12158 -10.98659 -10.57256 -10.50330 -10.02466 -9.54071 -8.90732 -8.15416 -6.21667 -0.20216 0.45603 0.83030 1.36727 1.37544 1.50064 1.93033 2.41211 3.05570 3.18411 3.35949 3.84854 3.89761 4.00086 4.34683 4.38349 4.42704 4.47681 4.55206 4.61884 4.70305 4.76625 4.94444 5.00415 5.08914 5.13054 5.16951 5.24276 5.35365 5.39999 5.42295 5.53050 5.72425 5.88974 6.18292 6.36426 6.44006 6.88574 6.89713 7.42962 8.96936 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.006857 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.956584 B = 4082.680186 C = 4432.783395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 H 0.075 0.925 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.509 5.509 14 C 0.049 3.951 15 C -0.123 4.123 16 C -0.115 4.115 17 C 0.136 3.864 18 H 0.115 0.885 19 C 0.034 3.966 20 N -0.491 5.491 21 C 0.015 3.985 22 C -0.249 4.249 23 S 0.142 5.858 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.050 0.950 27 H -0.006 1.006 28 H -0.019 1.019 29 H 0.260 0.740 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.185 0.815 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 8.679 15.854 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.041 4.041 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.234 5.234 14 C -0.078 4.078 15 C -0.161 4.161 16 C -0.155 4.155 17 C 0.025 3.975 18 H 0.133 0.867 19 C -0.243 4.243 20 N -0.206 5.206 21 C -0.135 4.135 22 C -0.388 4.388 23 S 0.397 5.603 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.012 0.988 28 H -0.001 1.001 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.202 0.798 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.343 7.557 16.137 19.272 hybrid contribution 1.426 1.358 -1.773 2.650 sum -5.917 8.915 14.364 17.911 Atomic orbital electron populations 1.22434 0.95646 1.01886 1.01428 1.22264 0.93994 0.97891 0.89936 0.90785 1.19006 0.94769 0.94729 0.91435 1.21607 0.98628 1.18864 1.15716 0.92302 1.25835 1.02379 0.95236 0.96085 1.70114 1.38674 1.26516 1.22282 0.85570 0.80168 0.78400 0.78009 1.18783 1.20320 1.20762 1.64065 1.12452 1.45579 1.01310 1.23102 0.87212 1.01010 0.96508 1.22764 0.99321 0.99658 0.94401 1.22755 0.92818 0.99201 1.00741 1.21518 0.96933 0.85996 0.93054 0.86732 1.27533 0.97067 1.00205 0.99521 1.66258 1.37215 1.02073 1.15102 1.22158 0.91629 0.97148 1.02553 1.27395 1.03182 1.02779 1.05415 1.83697 1.16168 1.12740 1.47738 0.90718 0.94212 0.93049 0.98751 1.00069 0.93084 0.93107 0.93298 0.89557 0.90057 0.92004 0.87627 0.79826 0.77476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 8.70 71.98 0.63 -5.42 16 2 C 0.07 3.03 1.67 44.91 0.07 3.10 16 3 H 0.07 3.50 4.77 -2.39 -0.01 3.49 16 4 C 0.04 2.13 4.34 29.85 0.13 2.26 16 5 C -0.51 -29.53 6.97 25.60 0.18 -29.36 16 6 H 0.06 3.37 5.79 -2.91 -0.02 3.36 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -58.52 13.29 21.44 0.28 -58.23 16 9 Si 0.95 45.62 29.54 68.60 2.03 47.65 16 10 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 N -0.51 -20.31 5.02 -839.85 -4.21 -24.53 16 14 C 0.05 2.02 5.01 86.77 0.43 2.46 16 15 C -0.12 -3.61 7.08 31.98 0.23 -3.38 16 16 C -0.12 -3.06 6.46 31.78 0.21 -2.85 16 17 C 0.14 4.16 3.67 44.51 0.16 4.32 16 18 H 0.11 2.99 8.13 -2.39 -0.02 2.97 16 19 C 0.03 1.02 3.05 88.52 0.27 1.29 16 20 N -0.49 -16.28 7.36 -191.44 -1.41 -17.69 16 21 C 0.01 0.39 11.35 83.66 0.95 1.34 16 22 C -0.25 -5.15 11.37 66.78 0.76 -4.39 16 23 S 0.14 3.14 21.16 -56.49 -1.20 1.94 16 24 H 0.07 2.44 3.00 -15.73 -0.05 2.40 16 25 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H -0.01 -0.37 8.12 -2.38 -0.02 -0.39 16 28 H -0.02 -1.16 7.86 -2.39 -0.02 -1.17 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.05 2.35 8.10 -2.39 -0.02 2.33 16 31 H 0.05 2.31 4.88 -2.39 -0.01 2.29 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.81 7.70 -2.39 -0.02 1.79 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.68 296.13 1.00 -68.68 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.02 Total: 12.26 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.48 Total: -30.08 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -5.34 Total: -100.45 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.20 Total: 1.94 kcal Total: -69.68 1.00 -68.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710619371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.785 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds