Wall clock time and date at job start Mon Mar 30 2020 07:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47363 * 2 1 4 4 C 1.53002 * 109.46981 * 119.99526 * 2 1 3 5 5 C 1.50698 * 109.47241 * 182.47053 * 4 2 1 6 6 H 1.07997 * 120.00079 * 354.71119 * 5 4 2 7 7 C 1.37881 * 119.99892 * 174.70611 * 5 4 2 8 8 N 1.31505 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99719 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46933 * 60.00359 * 9 7 5 11 11 H 1.48508 * 109.46752 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47120 * 300.00229 * 9 7 5 13 13 N 1.46896 * 109.47240 * 239.99174 * 2 1 3 14 14 C 1.47900 * 110.99871 * 72.23851 * 13 2 1 15 15 C 1.53993 * 107.05963 * 214.15565 * 14 13 2 16 16 C 1.54597 * 105.13688 * 1.22504 * 15 14 13 17 17 C 1.48533 * 111.00254 * 314.84013 * 13 2 1 18 18 H 1.08996 * 110.66336 * 41.28463 * 17 13 2 19 19 C 1.50703 * 110.66647 * 278.15370 * 17 13 2 20 20 N 1.29024 * 124.91612 * 315.26572 * 19 17 13 21 21 C 1.31783 * 117.12459 * 179.81202 * 20 19 17 22 22 C 1.33640 * 114.49916 * 0.47683 * 21 20 19 23 23 S 1.70976 * 124.91352 * 135.57260 * 19 17 13 24 24 H 1.09002 * 109.46549 * 68.57812 * 1 2 3 25 25 H 1.09000 * 109.46821 * 308.58597 * 1 2 3 26 26 H 1.08996 * 109.47247 * 188.57924 * 1 2 3 27 27 H 1.09004 * 109.47232 * 302.46831 * 4 2 1 28 28 H 1.09007 * 109.47118 * 62.46857 * 4 2 1 29 29 H 0.96998 * 120.00522 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.91788 * 333.50638 * 14 13 2 31 31 H 1.08998 * 109.92303 * 94.60077 * 14 13 2 32 32 H 1.09005 * 110.31224 * 120.13433 * 15 14 13 33 33 H 1.08996 * 110.31076 * 242.20909 * 15 14 13 34 34 H 1.08999 * 110.72543 * 140.31843 * 16 15 14 35 35 H 1.08999 * 110.72224 * 263.41724 * 16 15 14 36 36 H 1.07991 * 122.75102 * 180.22630 * 21 20 19 37 37 H 1.08000 * 126.04182 * 179.78499 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5457 -0.6684 1.2804 6 1 4.0885 -0.2463 0.4476 7 6 4.2303 -1.1588 2.3721 8 7 3.5694 -1.6732 3.3860 9 14 6.0969 -1.0940 2.4102 10 1 6.5452 0.3181 2.3104 11 1 6.5866 -1.6806 3.6837 12 1 6.6425 -1.8687 1.2668 13 7 2.0197 -0.6926 -1.1993 14 6 1.7992 0.1259 -2.4112 15 6 1.4945 -0.8477 -3.5647 16 6 1.5255 -2.2545 -2.9244 17 6 1.2753 -1.9581 -1.4244 18 1 0.2116 -1.8181 -1.2322 19 6 1.8320 -3.0629 -0.5638 20 7 3.0877 -3.3110 -0.4014 21 6 3.4041 -4.3154 0.3910 22 6 2.3568 -4.9561 0.9188 23 16 0.8908 -4.1737 0.3326 24 1 -0.3632 0.3754 -0.9567 25 1 -0.3633 0.6410 0.8033 26 1 -0.3633 -1.0161 0.1533 27 1 1.6409 -0.2334 2.1388 28 1 1.7132 -1.7609 1.2276 29 1 4.0510 -2.0179 4.1542 30 1 0.9534 0.7962 -2.2578 31 1 2.6951 0.7045 -2.6366 32 1 0.5082 -0.6435 -3.9816 33 1 2.2564 -0.7663 -4.3398 34 1 0.7319 -2.8811 -3.3314 35 1 2.4985 -2.7235 -3.0707 36 1 4.4259 -4.6000 0.5939 37 1 2.4010 -5.8034 1.5870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710619373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:30 Heat of formation + Delta-G solvation = 39.154942 kcal Electronic energy + Delta-G solvation = -19344.465106 eV Core-core repulsion = 16634.097751 eV Total energy + Delta-G solvation = -2710.367355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01618 -39.52333 -35.80586 -34.01783 -32.16977 -30.07343 -29.22059 -28.90504 -25.68555 -25.14530 -23.09247 -21.71262 -21.24548 -19.69634 -18.73830 -18.23112 -17.04135 -16.63461 -16.44225 -15.85438 -15.31583 -14.98689 -14.83886 -14.39612 -14.22871 -13.90957 -13.53893 -13.35847 -13.05675 -12.79126 -12.57095 -12.49291 -12.38883 -12.30835 -12.26719 -12.01680 -11.74103 -11.30393 -11.05050 -10.99883 -10.39906 -10.20672 -9.97753 -9.41484 -8.94839 -7.98648 -5.96175 0.05585 0.70255 1.00599 1.37965 1.39842 1.47482 2.26484 2.52224 3.24190 3.40854 3.43543 3.82500 3.97112 4.11621 4.23801 4.37321 4.44046 4.46632 4.47827 4.58055 4.69059 4.80501 4.84293 4.97406 5.03806 5.07154 5.21983 5.22357 5.32688 5.42121 5.48217 5.55399 5.82838 5.98765 6.26800 6.39622 6.61134 7.11123 7.24420 7.65560 9.12750 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.010037 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.291747 B = 2789.068904 C = 3478.696531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.461 4.461 6 H 0.042 0.958 7 C 0.012 3.988 8 N -0.933 5.933 9 Si 0.931 3.069 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.498 5.498 14 C 0.029 3.971 15 C -0.115 4.115 16 C -0.104 4.104 17 C 0.131 3.869 18 H 0.086 0.914 19 C 0.081 3.919 20 N -0.453 5.453 21 C 0.031 3.969 22 C -0.259 4.259 23 S 0.091 5.909 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.051 0.949 27 H -0.019 1.019 28 H 0.017 0.983 29 H 0.251 0.749 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.162 0.838 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 -3.192 -12.257 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 H 0.078 0.922 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.061 0.939 7 C -0.184 4.184 8 N -0.576 5.576 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.222 5.222 14 C -0.098 4.098 15 C -0.153 4.153 16 C -0.144 4.144 17 C 0.019 3.981 18 H 0.103 0.897 19 C -0.198 4.198 20 N -0.165 5.165 21 C -0.120 4.120 22 C -0.398 4.398 23 S 0.345 5.655 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.000 1.000 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.179 0.821 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.679 -3.191 -12.127 15.250 hybrid contribution 1.573 -0.038 1.165 1.958 sum -7.106 -3.229 -10.962 13.457 Atomic orbital electron populations 1.22404 0.96840 1.01610 1.02487 1.21817 0.92354 0.97165 0.91568 0.92237 1.19152 0.95270 0.95481 0.90629 1.21091 0.92546 1.35820 1.00521 0.93925 1.25434 1.00581 0.96416 0.95969 1.70055 1.35838 1.43890 1.07828 0.86030 0.83564 0.78017 0.76493 1.20368 1.21656 1.20422 1.64671 1.52971 1.02614 1.01966 1.22949 1.00672 0.96323 0.89874 1.22346 1.03312 0.92646 0.97004 1.22483 1.02643 0.98398 0.90880 1.21465 0.95604 0.87119 0.93899 0.89674 1.26872 0.91098 1.01010 1.00837 1.65990 1.17650 1.14625 1.18277 1.21791 1.00788 0.92605 0.96831 1.27070 0.94195 1.08792 1.09727 1.83278 1.12414 1.26359 1.43444 0.90634 0.92247 0.93034 1.00036 0.96485 0.93984 0.92570 0.91402 0.88886 0.90083 0.88580 0.92070 0.82087 0.79252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 7.99 71.98 0.58 -5.00 16 2 C 0.08 3.23 2.21 44.92 0.10 3.33 16 3 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 4 C 0.03 1.67 4.13 29.85 0.12 1.79 16 5 C -0.46 -26.42 8.37 25.60 0.21 -26.20 16 6 H 0.04 2.53 7.67 -2.91 -0.02 2.51 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 9 Si 0.93 47.36 29.54 68.60 2.03 49.39 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 13 N -0.50 -18.51 4.54 -837.56 -3.80 -22.31 16 14 C 0.03 0.83 6.40 86.45 0.55 1.38 16 15 C -0.12 -2.47 6.93 31.47 0.22 -2.26 16 16 C -0.10 -2.70 6.48 31.80 0.21 -2.49 16 17 C 0.13 4.30 2.43 44.51 0.11 4.41 16 18 H 0.09 2.53 5.41 -2.39 -0.01 2.52 16 19 C 0.08 3.13 3.66 88.52 0.32 3.45 16 20 N -0.45 -19.91 10.10 -191.45 -1.93 -21.85 16 21 C 0.03 1.26 11.35 83.66 0.95 2.21 16 22 C -0.26 -9.32 11.37 66.78 0.76 -8.56 16 23 S 0.09 3.11 22.61 -56.49 -1.28 1.83 16 24 H 0.07 1.93 6.54 -2.39 -0.02 1.91 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.65 6.50 -2.39 -0.02 1.64 16 27 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 28 H 0.02 0.90 5.04 -2.38 -0.01 0.89 16 29 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.06 1.39 6.30 -2.38 -0.02 1.37 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 36 H 0.16 6.33 8.06 -2.92 -0.02 6.31 16 37 H 0.19 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -69.01 305.01 0.94 -68.07 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.05 Total: 8.42 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 4.59 Total: -26.80 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -5.45 Total: -100.91 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.28 Total: 1.83 kcal Total: -69.01 0.94 -68.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710619373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.225 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds