Wall clock time and date at job start Mon Mar 30 2020 07:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47248 * 2 1 4 4 C 1.52993 * 109.47549 * 120.00032 * 2 1 3 5 5 C 1.50701 * 109.47573 * 184.99887 * 4 2 1 6 6 H 1.08010 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00663 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00550 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99552 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46918 * 90.00270 * 9 7 5 11 11 H 1.48499 * 109.47165 * 209.99897 * 9 7 5 12 12 H 1.48501 * 109.47527 * 330.00533 * 9 7 5 13 13 N 1.46905 * 109.47185 * 240.00442 * 2 1 3 14 14 C 1.47440 * 110.99832 * 305.85923 * 13 2 1 15 15 C 1.54320 * 107.23490 * 123.25543 * 14 13 2 16 16 C 1.55141 * 103.01771 * 22.28667 * 15 14 13 17 17 C 1.47846 * 110.99924 * 66.69969 * 13 2 1 18 18 H 1.09000 * 110.37543 * 332.46882 * 17 13 2 19 19 C 1.50703 * 110.37261 * 94.80818 * 17 13 2 20 20 N 1.29029 * 124.91153 * 44.70023 * 19 17 13 21 21 C 1.31784 * 117.12421 * 179.81323 * 20 19 17 22 22 C 1.33644 * 114.49451 * 0.46527 * 21 20 19 23 23 S 1.70971 * 124.92019 * 224.99769 * 19 17 13 24 24 H 1.09001 * 109.47206 * 306.56053 * 1 2 3 25 25 H 1.09003 * 109.47250 * 186.56648 * 1 2 3 26 26 H 1.08999 * 109.47474 * 66.56645 * 1 2 3 27 27 H 1.09003 * 109.47424 * 305.00534 * 4 2 1 28 28 H 1.09004 * 109.47034 * 65.00241 * 4 2 1 29 29 H 0.97002 * 120.00160 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.88925 * 242.66559 * 14 13 2 31 31 H 1.09005 * 109.88785 * 3.68956 * 14 13 2 32 32 H 1.09004 * 110.70443 * 140.66354 * 15 14 13 33 33 H 1.09003 * 110.70661 * 263.90571 * 15 14 13 34 34 H 1.08997 * 110.99364 * 82.43463 * 16 15 14 35 35 H 1.09003 * 110.98972 * 206.22223 * 16 15 14 36 36 H 1.07993 * 122.75578 * 180.22114 * 21 20 19 37 37 H 1.08004 * 126.03747 * 179.78563 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0854 0.5394 7 6 4.2306 -1.1935 2.3576 8 7 5.5412 -1.1003 2.4132 9 14 3.3017 -2.1086 3.6952 10 1 3.1701 -3.5386 3.3167 11 1 4.0456 -2.0021 4.9760 12 1 1.9510 -1.5130 3.8562 13 7 2.0196 -0.6924 -1.1995 14 6 1.4355 -2.0420 -1.3060 15 6 0.7241 -2.1258 -2.6729 16 6 1.4273 -1.0185 -3.5013 17 6 1.6815 0.0648 -2.4235 18 1 0.7826 0.6606 -2.2650 19 6 2.8332 0.9482 -2.8289 20 7 4.0704 0.5827 -2.8557 21 6 4.9543 1.4816 -3.2395 22 6 4.4347 2.6745 -3.5447 23 16 2.6905 2.5817 -3.3130 24 1 -0.3634 0.6122 0.8255 25 1 -0.3634 -1.0209 0.1175 26 1 -0.3634 0.4087 -0.9429 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2055 29 1 6.0256 -1.5070 3.1486 30 1 2.2239 -2.7926 -1.2517 31 1 0.7174 -2.1998 -0.5012 32 1 0.8781 -3.1041 -3.1281 33 1 -0.3395 -1.9115 -2.5676 34 1 2.3663 -1.3808 -3.9197 35 1 0.7715 -0.6424 -4.2865 36 1 6.0121 1.2728 -3.2987 37 1 4.9864 3.5421 -3.8753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710619375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:33 Heat of formation + Delta-G solvation = 57.026868 kcal Electronic energy + Delta-G solvation = -18716.190601 eV Core-core repulsion = 16006.598230 eV Total energy + Delta-G solvation = -2709.592371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78861 -38.55557 -34.26295 -32.06640 -31.06541 -28.80310 -28.14262 -27.69823 -24.63329 -23.00489 -21.57457 -21.23684 -19.44435 -18.36879 -17.65803 -16.52308 -16.16201 -15.46178 -14.72639 -14.28214 -14.06759 -13.72786 -13.48107 -13.21515 -12.88001 -12.46476 -12.27661 -12.08619 -11.66724 -11.49420 -11.32479 -11.27719 -11.12076 -10.87499 -10.69147 -10.40081 -10.02359 -9.72952 -9.50898 -9.14527 -9.04691 -8.98430 -8.57747 -8.35995 -7.54650 -5.83520 -3.77230 1.02253 1.63592 2.01553 3.26044 3.38832 3.46188 3.47931 4.41408 4.51990 4.59384 4.89355 4.98688 5.16821 5.35253 5.42510 5.49513 5.54398 5.63544 5.71857 5.73528 5.79009 5.86430 5.93358 6.00545 6.09202 6.33568 6.37101 6.48767 6.49947 6.64532 6.78091 7.13896 7.34244 7.65210 7.81722 7.99657 8.24024 8.79554 9.32267 9.78957 11.30660 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.007230 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.111220 B = 3871.578521 C = 4664.597555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.089 3.911 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.486 4.486 6 H 0.080 0.920 7 C 0.061 3.939 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.478 5.478 14 C 0.047 3.953 15 C -0.140 4.140 16 C -0.113 4.113 17 C 0.139 3.861 18 H 0.071 0.929 19 C 0.087 3.913 20 N -0.434 5.434 21 C 0.047 3.953 22 C -0.267 4.267 23 S 0.073 5.927 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.017 0.983 28 H 0.013 0.987 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.173 0.827 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 4.369 -13.403 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.019 4.019 3 H 0.090 0.910 4 C -0.041 4.041 5 C -0.525 4.525 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.201 5.201 14 C -0.081 4.081 15 C -0.179 4.179 16 C -0.152 4.152 17 C 0.026 3.974 18 H 0.089 0.911 19 C -0.193 4.193 20 N -0.147 5.147 21 C -0.104 4.104 22 C -0.406 4.406 23 S 0.327 5.673 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.190 0.810 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.863 4.448 -13.178 17.051 hybrid contribution -0.120 -0.477 0.829 0.964 sum -9.983 3.972 -12.349 16.368 Atomic orbital electron populations 1.22627 0.99569 1.01753 1.00866 1.21870 0.89818 0.98613 0.91607 0.91007 1.19656 0.98206 0.94899 0.91366 1.21056 0.89267 1.33663 1.08478 0.90185 1.25001 0.94638 0.96386 0.97754 1.69919 1.06380 1.46260 1.32198 0.86934 0.80374 0.80687 0.82113 1.20600 1.21705 1.19405 1.63411 1.56641 1.00735 0.99300 1.22802 0.97800 0.92144 0.95340 1.22837 0.99130 0.99135 0.96789 1.22697 1.01355 0.94759 0.96420 1.21078 0.90153 0.93550 0.92582 0.91090 1.27037 0.96120 0.94546 1.01566 1.66175 0.99866 1.34754 1.13866 1.21957 1.00934 0.88399 0.99098 1.26933 0.95981 1.03683 1.14050 1.83767 1.06863 1.13557 1.63153 0.92359 0.92465 0.93640 0.96460 0.96918 0.93200 0.90290 0.92011 0.90814 0.91811 0.89871 0.91162 0.81022 0.81063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.56 37.15 0.32 -2.65 16 2 C 0.09 1.78 2.22 -67.72 -0.15 1.63 16 3 H 0.07 1.54 8.12 -51.92 -0.42 1.12 16 4 C 0.00 -0.09 3.43 -27.89 -0.10 -0.19 16 5 C -0.49 -14.19 9.39 -34.44 -0.32 -14.51 16 6 H 0.08 2.62 7.99 -52.48 -0.42 2.20 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -29.03 13.96 55.43 0.77 -28.25 16 9 Si 0.87 22.29 27.47 -169.99 -4.67 17.62 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.48 -9.14 4.49 -216.84 -0.97 -10.12 16 14 C 0.05 0.79 5.57 -2.84 -0.02 0.77 16 15 C -0.14 -1.79 6.94 -24.91 -0.17 -1.96 16 16 C -0.11 -1.50 6.48 -24.59 -0.16 -1.66 16 17 C 0.14 2.20 2.69 -67.33 -0.18 2.02 16 18 H 0.07 1.02 5.93 -51.93 -0.31 0.71 16 19 C 0.09 1.48 6.30 -13.45 -0.08 1.39 16 20 N -0.43 -8.28 10.52 -11.86 -0.12 -8.40 16 21 C 0.05 0.76 11.35 -19.18 -0.22 0.54 16 22 C -0.27 -3.62 11.37 29.12 0.33 -3.29 16 23 S 0.07 1.00 23.18 -107.50 -2.49 -1.49 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.86 6.26 -51.93 -0.32 0.54 16 26 H 0.04 0.62 6.18 -51.93 -0.32 0.30 16 27 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 28 H 0.01 0.30 6.19 -51.93 -0.32 -0.02 16 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.02 4.83 -51.93 -0.25 0.77 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.22 8.05 -51.93 -0.42 0.81 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -33.32 306.02 -9.01 -42.33 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.28 Total: -0.16 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.85 Total: -16.14 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.33 Total: -46.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.32 -9.01 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710619375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.359 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds