Wall clock time and date at job start Mon Mar 30 2020 07:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47248 * 2 1 4 4 C 1.52993 * 109.47549 * 120.00032 * 2 1 3 5 5 C 1.50701 * 109.47573 * 184.99887 * 4 2 1 6 6 H 1.08010 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00663 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00550 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99552 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46918 * 90.00270 * 9 7 5 11 11 H 1.48499 * 109.47165 * 209.99897 * 9 7 5 12 12 H 1.48501 * 109.47527 * 330.00533 * 9 7 5 13 13 N 1.46905 * 109.47185 * 240.00442 * 2 1 3 14 14 C 1.47440 * 110.99832 * 305.85923 * 13 2 1 15 15 C 1.54320 * 107.23490 * 123.25543 * 14 13 2 16 16 C 1.55141 * 103.01771 * 22.28667 * 15 14 13 17 17 C 1.47846 * 110.99924 * 66.69969 * 13 2 1 18 18 H 1.09000 * 110.37543 * 332.46882 * 17 13 2 19 19 C 1.50703 * 110.37261 * 94.80818 * 17 13 2 20 20 N 1.29029 * 124.91153 * 44.70023 * 19 17 13 21 21 C 1.31784 * 117.12421 * 179.81323 * 20 19 17 22 22 C 1.33644 * 114.49451 * 0.46527 * 21 20 19 23 23 S 1.70971 * 124.92019 * 224.99769 * 19 17 13 24 24 H 1.09001 * 109.47206 * 306.56053 * 1 2 3 25 25 H 1.09003 * 109.47250 * 186.56648 * 1 2 3 26 26 H 1.08999 * 109.47474 * 66.56645 * 1 2 3 27 27 H 1.09003 * 109.47424 * 305.00534 * 4 2 1 28 28 H 1.09004 * 109.47034 * 65.00241 * 4 2 1 29 29 H 0.97002 * 120.00160 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.88925 * 242.66559 * 14 13 2 31 31 H 1.09005 * 109.88785 * 3.68956 * 14 13 2 32 32 H 1.09004 * 110.70443 * 140.66354 * 15 14 13 33 33 H 1.09003 * 110.70661 * 263.90571 * 15 14 13 34 34 H 1.08997 * 110.99364 * 82.43463 * 16 15 14 35 35 H 1.09003 * 110.98972 * 206.22223 * 16 15 14 36 36 H 1.07993 * 122.75578 * 180.22114 * 21 20 19 37 37 H 1.08004 * 126.03747 * 179.78563 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0854 0.5394 7 6 4.2306 -1.1935 2.3576 8 7 5.5412 -1.1003 2.4132 9 14 3.3017 -2.1086 3.6952 10 1 3.1701 -3.5386 3.3167 11 1 4.0456 -2.0021 4.9760 12 1 1.9510 -1.5130 3.8562 13 7 2.0196 -0.6924 -1.1995 14 6 1.4355 -2.0420 -1.3060 15 6 0.7241 -2.1258 -2.6729 16 6 1.4273 -1.0185 -3.5013 17 6 1.6815 0.0648 -2.4235 18 1 0.7826 0.6606 -2.2650 19 6 2.8332 0.9482 -2.8289 20 7 4.0704 0.5827 -2.8557 21 6 4.9543 1.4816 -3.2395 22 6 4.4347 2.6745 -3.5447 23 16 2.6905 2.5817 -3.3130 24 1 -0.3634 0.6122 0.8255 25 1 -0.3634 -1.0209 0.1175 26 1 -0.3634 0.4087 -0.9429 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2055 29 1 6.0256 -1.5070 3.1486 30 1 2.2239 -2.7926 -1.2517 31 1 0.7174 -2.1998 -0.5012 32 1 0.8781 -3.1041 -3.1281 33 1 -0.3395 -1.9115 -2.5676 34 1 2.3663 -1.3808 -3.9197 35 1 0.7715 -0.6424 -4.2865 36 1 6.0121 1.2728 -3.2987 37 1 4.9864 3.5421 -3.8753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710619375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:33 Heat of formation + Delta-G solvation = 33.570250 kcal Electronic energy + Delta-G solvation = -18717.207756 eV Core-core repulsion = 16006.598230 eV Total energy + Delta-G solvation = -2710.609526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04528 -39.83643 -35.87723 -34.13947 -32.23287 -30.46251 -29.37658 -29.21969 -25.84283 -24.82813 -23.06328 -22.37467 -20.80209 -19.72687 -18.87339 -18.76956 -17.47585 -16.65727 -16.39760 -15.80172 -15.37041 -15.01519 -14.95974 -14.47923 -14.41406 -14.15205 -13.84753 -13.42505 -13.38400 -12.78314 -12.65097 -12.54198 -12.42589 -12.40565 -12.01706 -11.75558 -11.64040 -11.58544 -11.28811 -11.14828 -10.67192 -10.36993 -10.22577 -9.72356 -8.88666 -8.16389 -6.15507 -0.14680 0.51139 0.84435 1.34910 1.37162 1.47966 2.02646 2.41379 3.12222 3.24917 3.31775 3.78159 3.85161 4.04099 4.16976 4.32542 4.35878 4.39656 4.41547 4.55685 4.62947 4.65934 4.83259 4.91459 4.96730 5.04400 5.06540 5.16777 5.21501 5.27702 5.32048 5.43041 5.56867 5.75441 6.30937 6.38564 6.55541 6.93377 7.06239 7.44301 9.01767 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.007230 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.111220 B = 3871.578521 C = 4664.597555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 H 0.046 0.954 4 C -0.001 4.001 5 C -0.485 4.485 6 H 0.025 0.975 7 C -0.008 4.008 8 N -0.961 5.961 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.244 1.244 13 N -0.516 5.516 14 C 0.043 3.957 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.137 3.863 18 H 0.092 0.908 19 C 0.055 3.945 20 N -0.487 5.487 21 C 0.012 3.988 22 C -0.254 4.254 23 S 0.131 5.869 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.178 0.822 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 4.773 -13.988 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 H 0.064 0.936 4 C -0.038 4.038 5 C -0.523 4.523 6 H 0.044 0.956 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.167 1.167 13 N -0.240 5.240 14 C -0.085 4.085 15 C -0.163 4.163 16 C -0.146 4.146 17 C 0.025 3.975 18 H 0.109 0.891 19 C -0.224 4.224 20 N -0.201 5.201 21 C -0.139 4.139 22 C -0.393 4.393 23 S 0.384 5.616 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.195 0.805 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.309 4.860 -13.782 19.766 hybrid contribution 1.066 -0.483 0.925 1.492 sum -12.244 4.377 -12.857 18.286 Atomic orbital electron populations 1.22475 0.95522 1.02867 1.02699 1.21588 0.92884 0.96473 0.90429 0.93609 1.19595 0.94439 0.95818 0.93960 1.21254 0.92134 1.32259 1.06680 0.95646 1.26010 0.95538 0.97730 1.00892 1.70115 1.08619 1.48130 1.33503 0.85710 0.79755 0.79298 0.78096 1.19690 1.21536 1.16737 1.63162 1.58470 1.02036 1.00337 1.22772 0.97086 0.90317 0.98295 1.22780 1.00021 0.99714 0.93811 1.22688 1.01087 0.94205 0.96594 1.21251 0.90378 0.94112 0.91755 0.89091 1.27329 0.95943 0.96718 1.02413 1.66137 1.01400 1.37128 1.15399 1.22167 1.01305 0.89401 1.01015 1.27390 0.96592 1.03691 1.11594 1.83420 1.06170 1.10451 1.61521 0.91563 0.91412 0.91020 0.96037 0.96318 0.93211 0.93728 0.91538 0.89471 0.88872 0.92207 0.87698 0.80501 0.77592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.98 8.56 71.98 0.62 -4.36 16 2 C 0.09 3.74 2.22 44.91 0.10 3.84 16 3 H 0.05 2.00 8.12 -2.38 -0.02 1.98 16 4 C 0.00 -0.03 3.43 29.85 0.10 0.07 16 5 C -0.48 -29.46 9.39 25.60 0.24 -29.22 16 6 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 7 C -0.01 -0.46 5.47 84.66 0.46 0.00 16 8 N -0.96 -64.21 13.96 21.45 0.30 -63.91 16 9 Si 0.95 46.46 27.47 68.60 1.88 48.34 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.24 -10.88 6.54 99.48 0.65 -10.23 16 13 N -0.52 -19.87 4.49 -839.93 -3.77 -23.65 16 14 C 0.04 1.42 5.57 86.65 0.48 1.90 16 15 C -0.12 -2.85 6.94 31.78 0.22 -2.63 16 16 C -0.11 -2.63 6.48 31.98 0.21 -2.42 16 17 C 0.14 4.19 2.69 44.64 0.12 4.31 16 18 H 0.09 2.35 5.93 -2.39 -0.01 2.33 16 19 C 0.06 1.86 6.30 88.52 0.56 2.42 16 20 N -0.49 -19.43 10.52 -191.45 -2.01 -21.44 16 21 C 0.01 0.39 11.35 83.66 0.95 1.34 16 22 C -0.25 -6.61 11.37 66.78 0.76 -5.86 16 23 S 0.13 3.37 23.18 -56.49 -1.31 2.06 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.78 6.26 -2.39 -0.01 1.76 16 26 H 0.07 1.65 6.18 -2.39 -0.01 1.63 16 27 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 28 H 0.02 0.87 6.19 -2.38 -0.01 0.86 16 29 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 2.09 4.83 -2.38 -0.01 2.07 16 32 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.18 5.30 8.06 -2.91 -0.02 5.28 16 37 H 0.21 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -77.63 306.02 0.91 -76.73 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.00 Total: 12.47 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 4.82 Total: -30.60 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -5.49 Total: -109.00 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.34 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.31 Total: 2.06 kcal Total: -77.63 0.91 -76.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710619375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.296 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds