Wall clock time and date at job start Mon Mar 30 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46861 * 2 1 4 4 H 1.08995 * 109.47222 * 302.23117 * 3 2 1 5 5 C 1.50702 * 109.46806 * 62.23281 * 3 2 1 6 6 H 1.08007 * 119.99645 * 84.57807 * 5 3 2 7 7 C 1.37869 * 120.00070 * 264.57427 * 5 3 2 8 8 N 1.31516 * 120.00098 * 358.05099 * 7 5 3 9 9 Si 1.86802 * 120.00223 * 178.05498 * 7 5 3 10 10 H 1.48506 * 109.46937 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47453 * 119.99908 * 9 7 5 12 12 H 1.48496 * 109.47131 * 240.00242 * 9 7 5 13 13 N 1.46895 * 109.47053 * 182.23191 * 3 2 1 14 14 C 1.47904 * 110.99979 * 299.94346 * 13 3 2 15 15 C 1.54001 * 107.05695 * 145.84679 * 14 13 3 16 16 C 1.54591 * 105.14089 * 358.77157 * 15 14 13 17 17 H 1.08997 * 110.72432 * 96.58206 * 16 15 14 18 18 C 1.50703 * 110.72549 * 219.68975 * 16 15 14 19 19 N 1.29016 * 124.91679 * 56.45317 * 18 16 15 20 20 C 1.31784 * 117.12421 * 180.22976 * 19 18 16 21 21 C 1.33641 * 114.50027 * 359.48145 * 20 19 18 22 22 S 1.70978 * 124.91400 * 236.14726 * 18 16 15 23 23 C 1.48737 * 111.04570 * 57.51908 * 13 3 2 24 24 H 1.09002 * 109.47119 * 175.81861 * 1 2 3 25 25 H 1.09002 * 109.47075 * 295.81600 * 1 2 3 26 26 H 1.09002 * 109.47433 * 55.81797 * 1 2 3 27 27 H 1.09002 * 109.47265 * 240.00478 * 2 1 3 28 28 H 1.08998 * 109.47420 * 119.99851 * 2 1 3 29 29 H 0.97003 * 119.99994 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.92006 * 26.49473 * 14 13 3 31 31 H 1.09001 * 110.08263 * 265.28849 * 14 13 3 32 32 H 1.08999 * 110.30268 * 239.85812 * 15 14 13 33 33 H 1.08993 * 110.39106 * 117.73214 * 15 14 13 34 34 H 1.08005 * 122.74835 * 179.74797 * 20 19 18 35 35 H 1.08003 * 126.03840 * 180.26715 * 21 20 19 36 36 H 1.08995 * 110.83569 * 81.95979 * 23 13 3 37 37 H 1.08999 * 110.58369 * 318.77295 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6443 1.9678 -0.8693 5 6 1.5833 2.1368 1.2572 6 1 2.1558 2.0369 2.1676 7 6 0.4347 2.8994 1.2453 8 7 -0.2414 3.0524 0.1277 9 14 -0.1610 3.7154 2.8165 10 1 0.7698 3.3900 3.9269 11 1 -0.2067 5.1871 2.6234 12 1 -1.5200 3.2173 3.1484 13 7 3.5079 1.4430 -0.0539 14 6 4.0814 0.7385 1.1132 15 6 5.3641 0.0356 0.6312 16 6 5.4595 0.3598 -0.8774 17 1 6.1183 1.2112 -1.0480 18 6 5.9337 -0.8427 -1.6522 19 7 5.3615 -1.9990 -1.6444 20 6 5.9109 -2.9462 -2.3775 21 6 7.0014 -2.5648 -3.0493 22 16 7.3037 -0.8699 -2.6749 23 6 3.9985 0.7130 -1.2533 24 1 -0.3633 -1.0249 -0.0749 25 1 -0.3633 0.4475 0.9251 26 1 -0.3634 0.5774 -0.8501 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -1.0497 3.5886 0.1194 30 1 3.3717 0.0005 1.4870 31 1 4.3229 1.4530 1.9002 32 1 5.2852 -1.0409 0.7826 33 1 6.2334 0.4285 1.1583 34 1 5.5100 -3.9475 -2.4344 35 1 7.5929 -3.1859 -3.7058 36 1 3.9722 1.3536 -2.1348 37 1 3.4138 -0.1922 -1.4168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710622387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:28 Heat of formation + Delta-G solvation = 51.223078 kcal Electronic energy + Delta-G solvation = -18411.254058 eV Core-core repulsion = 15701.410016 eV Total energy + Delta-G solvation = -2709.844042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86869 -38.28395 -34.49531 -31.84675 -30.77350 -29.15285 -28.26042 -26.24658 -24.53134 -23.03874 -21.71003 -21.13223 -19.16894 -18.77594 -17.99370 -16.03184 -15.75331 -15.15177 -14.92146 -14.37545 -14.17095 -13.68237 -13.52353 -13.02544 -12.83671 -12.46973 -11.96621 -11.79276 -11.54180 -11.19673 -10.94887 -10.89717 -10.72787 -10.56093 -10.43039 -10.26541 -10.25129 -9.62605 -9.49550 -9.38181 -9.31134 -8.86327 -8.75482 -8.40122 -7.12171 -5.97865 -3.98753 0.71425 1.35765 1.74630 2.86685 3.32241 3.40767 3.44561 4.16324 4.45975 4.89139 5.09258 5.10834 5.20743 5.26073 5.45431 5.56814 5.61757 5.85384 5.97676 6.16957 6.21158 6.33843 6.40623 6.42601 6.49766 6.70057 6.73928 6.79132 7.09270 7.24958 7.34047 7.51496 7.69060 7.80293 7.87752 8.05916 8.40129 8.60207 9.08316 9.63445 11.10944 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.004720 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.288321 B = 5930.577552 C = 6204.369639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 C 0.193 3.807 4 H 0.071 0.929 5 C -0.494 4.494 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.505 5.505 14 C 0.045 3.955 15 C -0.115 4.115 16 C -0.023 4.023 17 H 0.097 0.903 18 C 0.081 3.919 19 N -0.474 5.474 20 C 0.044 3.956 21 C -0.273 4.273 22 S 0.102 5.898 23 C 0.042 3.958 24 H 0.012 0.988 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.028 0.972 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.071 0.929 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 -8.881 -5.082 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.087 3.913 4 H 0.089 0.911 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.229 5.229 14 C -0.084 4.084 15 C -0.155 4.155 16 C -0.045 4.045 17 H 0.115 0.885 18 C -0.197 4.197 19 N -0.187 5.187 20 C -0.107 4.107 21 C -0.412 4.412 22 S 0.358 5.642 23 C -0.088 4.088 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.090 0.910 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.532 -7.584 -5.163 16.349 hybrid contribution -0.974 -1.415 0.658 1.840 sum 12.558 -8.999 -4.505 16.093 Atomic orbital electron populations 1.21403 0.95773 0.96914 1.03398 1.22231 0.96953 1.01043 0.97875 1.19731 0.80716 0.91027 0.99832 0.91067 1.20981 1.07803 1.29369 0.95152 0.92563 1.24880 0.96909 0.95743 0.95902 1.69940 1.17193 1.40109 1.25474 0.86591 0.78541 0.79257 0.83908 1.19826 1.21086 1.21193 1.65349 1.12310 1.46199 0.99011 1.22701 0.93531 0.96561 0.95575 1.22506 0.99377 1.01003 0.92598 1.20888 0.98896 0.90377 0.94375 0.88487 1.27216 0.95126 0.97439 0.99906 1.66221 1.31133 0.99795 1.21558 1.21842 0.93736 0.99869 0.95270 1.26987 1.05199 0.98498 1.10556 1.83990 1.29781 1.08455 1.42007 1.23342 0.91043 0.98132 0.96316 0.96935 0.92075 0.92668 0.95337 0.94030 0.93095 0.93010 0.91155 0.91327 0.91574 0.81017 0.80919 0.91019 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.77 37.16 0.33 -2.38 16 2 C -0.14 -3.24 4.80 -26.73 -0.13 -3.36 16 3 C 0.19 4.76 2.13 -68.86 -0.15 4.62 16 4 H 0.07 1.99 7.26 -51.93 -0.38 1.61 16 5 C -0.49 -13.19 7.42 -34.44 -0.26 -13.45 16 6 H 0.06 1.51 6.91 -52.48 -0.36 1.15 16 7 C 0.07 1.83 4.38 -17.82 -0.08 1.75 16 8 N -0.89 -24.85 11.79 55.43 0.65 -24.20 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -10.90 5.31 -223.70 -1.19 -12.09 16 14 C 0.04 0.86 5.26 -2.75 -0.01 0.85 16 15 C -0.11 -1.81 6.50 -25.37 -0.16 -1.98 16 16 C -0.02 -0.35 3.54 -89.91 -0.32 -0.67 16 17 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 18 C 0.08 1.17 5.99 -13.46 -0.08 1.09 16 19 N -0.47 -7.23 10.07 -11.86 -0.12 -7.35 16 20 C 0.04 0.54 11.35 -19.18 -0.22 0.32 16 21 C -0.27 -2.83 11.37 29.12 0.33 -2.50 16 22 S 0.10 1.16 23.18 -107.50 -2.49 -1.33 16 23 C 0.04 0.77 5.84 -1.78 -0.01 0.76 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 1.52 6.74 -51.93 -0.35 1.17 16 26 H 0.05 1.34 7.89 -51.93 -0.41 0.93 16 27 H 0.03 0.62 5.91 -51.93 -0.31 0.32 16 28 H 0.04 0.94 6.08 -51.93 -0.32 0.63 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 1.07 5.51 -51.93 -0.29 0.78 16 31 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 32 H 0.07 1.10 7.63 -51.93 -0.40 0.71 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.17 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.18 5.29 -51.93 -0.27 0.90 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -28.55 302.70 -9.53 -38.08 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.16 Total: 1.15 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.76 Total: -14.94 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.65 Total: -43.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.55 -9.53 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710622387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.300 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds