Wall clock time and date at job start Mon Mar 30 2020 07:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46861 * 2 1 4 4 H 1.08995 * 109.47222 * 302.23117 * 3 2 1 5 5 C 1.50702 * 109.46806 * 62.23281 * 3 2 1 6 6 H 1.08007 * 119.99645 * 84.57807 * 5 3 2 7 7 C 1.37869 * 120.00070 * 264.57427 * 5 3 2 8 8 N 1.31516 * 120.00098 * 358.05099 * 7 5 3 9 9 Si 1.86802 * 120.00223 * 178.05498 * 7 5 3 10 10 H 1.48506 * 109.46937 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47453 * 119.99908 * 9 7 5 12 12 H 1.48496 * 109.47131 * 240.00242 * 9 7 5 13 13 N 1.46895 * 109.47053 * 182.23191 * 3 2 1 14 14 C 1.47904 * 110.99979 * 299.94346 * 13 3 2 15 15 C 1.54001 * 107.05695 * 145.84679 * 14 13 3 16 16 C 1.54591 * 105.14089 * 358.77157 * 15 14 13 17 17 H 1.08997 * 110.72432 * 96.58206 * 16 15 14 18 18 C 1.50703 * 110.72549 * 219.68975 * 16 15 14 19 19 N 1.29016 * 124.91679 * 56.45317 * 18 16 15 20 20 C 1.31784 * 117.12421 * 180.22976 * 19 18 16 21 21 C 1.33641 * 114.50027 * 359.48145 * 20 19 18 22 22 S 1.70978 * 124.91400 * 236.14726 * 18 16 15 23 23 C 1.48737 * 111.04570 * 57.51908 * 13 3 2 24 24 H 1.09002 * 109.47119 * 175.81861 * 1 2 3 25 25 H 1.09002 * 109.47075 * 295.81600 * 1 2 3 26 26 H 1.09002 * 109.47433 * 55.81797 * 1 2 3 27 27 H 1.09002 * 109.47265 * 240.00478 * 2 1 3 28 28 H 1.08998 * 109.47420 * 119.99851 * 2 1 3 29 29 H 0.97003 * 119.99994 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.92006 * 26.49473 * 14 13 3 31 31 H 1.09001 * 110.08263 * 265.28849 * 14 13 3 32 32 H 1.08999 * 110.30268 * 239.85812 * 15 14 13 33 33 H 1.08993 * 110.39106 * 117.73214 * 15 14 13 34 34 H 1.08005 * 122.74835 * 179.74797 * 20 19 18 35 35 H 1.08003 * 126.03840 * 180.26715 * 21 20 19 36 36 H 1.08995 * 110.83569 * 81.95979 * 23 13 3 37 37 H 1.08999 * 110.58369 * 318.77295 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6443 1.9678 -0.8693 5 6 1.5833 2.1368 1.2572 6 1 2.1558 2.0369 2.1676 7 6 0.4347 2.8994 1.2453 8 7 -0.2414 3.0524 0.1277 9 14 -0.1610 3.7154 2.8165 10 1 0.7698 3.3900 3.9269 11 1 -0.2067 5.1871 2.6234 12 1 -1.5200 3.2173 3.1484 13 7 3.5079 1.4430 -0.0539 14 6 4.0814 0.7385 1.1132 15 6 5.3641 0.0356 0.6312 16 6 5.4595 0.3598 -0.8774 17 1 6.1183 1.2112 -1.0480 18 6 5.9337 -0.8427 -1.6522 19 7 5.3615 -1.9990 -1.6444 20 6 5.9109 -2.9462 -2.3775 21 6 7.0014 -2.5648 -3.0493 22 16 7.3037 -0.8699 -2.6749 23 6 3.9985 0.7130 -1.2533 24 1 -0.3633 -1.0249 -0.0749 25 1 -0.3633 0.4475 0.9251 26 1 -0.3634 0.5774 -0.8501 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -1.0497 3.5886 0.1194 30 1 3.3717 0.0005 1.4870 31 1 4.3229 1.4530 1.9002 32 1 5.2852 -1.0409 0.7826 33 1 6.2334 0.4285 1.1583 34 1 5.5100 -3.9475 -2.4344 35 1 7.5929 -3.1859 -3.7058 36 1 3.9722 1.3536 -2.1348 37 1 3.4138 -0.1922 -1.4168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710622387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:27 Heat of formation + Delta-G solvation = 33.175207 kcal Electronic energy + Delta-G solvation = -18412.036672 eV Core-core repulsion = 15701.410016 eV Total energy + Delta-G solvation = -2710.626656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97805 -39.73333 -36.21210 -33.66555 -32.31611 -30.55815 -29.58695 -28.02826 -25.80260 -24.85815 -23.24262 -22.45445 -20.62478 -20.19584 -19.04374 -18.03254 -17.04961 -16.58676 -16.25467 -15.87213 -15.44367 -15.38796 -14.86131 -14.45201 -14.32994 -14.11055 -13.61165 -13.51431 -12.79036 -12.78664 -12.50221 -12.44004 -12.39068 -12.17028 -12.12859 -12.04421 -11.93810 -11.31049 -11.29171 -10.78524 -10.49848 -10.48269 -10.30068 -9.75238 -8.84843 -8.05415 -6.11997 -0.21361 0.45644 0.84635 1.42076 1.45130 1.55141 1.91986 2.46663 3.07915 3.24319 3.63003 3.81900 3.93003 4.06410 4.33246 4.39448 4.43489 4.54643 4.58223 4.62043 4.67475 4.80066 4.81578 4.91221 5.03781 5.13863 5.22095 5.24894 5.31105 5.36152 5.47009 5.67673 5.74009 5.80058 6.11317 6.57093 6.70676 6.87764 6.99527 7.52986 9.03014 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.004720 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.288321 B = 5930.577552 C = 6204.369639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C 0.201 3.799 4 H 0.032 0.968 5 C -0.505 4.505 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.915 5.915 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.522 5.522 14 C 0.046 3.954 15 C -0.103 4.103 16 C -0.012 4.012 17 H 0.113 0.887 18 C 0.046 3.954 19 N -0.504 5.504 20 C 0.018 3.982 21 C -0.253 4.253 22 S 0.148 5.852 23 C 0.043 3.957 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.259 0.741 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.192 0.808 35 H 0.209 0.791 36 H 0.069 0.931 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -9.937 -5.352 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.170 4.170 3 C 0.093 3.907 4 H 0.050 0.950 5 C -0.543 4.543 6 H 0.069 0.931 7 C -0.175 4.175 8 N -0.555 5.555 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.245 5.245 14 C -0.082 4.082 15 C -0.143 4.143 16 C -0.034 4.034 17 H 0.131 0.869 18 C -0.232 4.232 19 N -0.219 5.219 20 C -0.132 4.132 21 C -0.392 4.392 22 S 0.403 5.597 23 C -0.086 4.086 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.208 0.792 35 H 0.226 0.774 36 H 0.087 0.913 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.601 -8.641 -5.425 18.641 hybrid contribution -1.527 -1.146 0.641 2.014 sum 14.074 -9.788 -4.783 17.798 Atomic orbital electron populations 1.21276 0.95883 0.98018 1.01295 1.22079 0.96685 1.00075 0.98202 1.19427 0.82722 0.91242 0.97286 0.95023 1.21197 1.07898 1.29596 0.95653 0.93147 1.25529 0.97068 0.96411 0.98469 1.70062 1.17502 1.40818 1.27101 0.85688 0.78066 0.78196 0.80755 1.19352 1.20941 1.20834 1.65152 1.10476 1.47800 1.01055 1.22667 0.94829 0.96007 0.94702 1.22394 0.98231 1.00405 0.93289 1.20702 0.96772 0.91817 0.94115 0.86923 1.26887 0.97393 0.96971 1.01923 1.66186 1.32448 1.00663 1.22622 1.22175 0.94759 1.00345 0.95913 1.27473 1.04218 0.98291 1.09204 1.83795 1.27161 1.08786 1.39968 1.23276 0.93377 0.96938 0.95051 0.94135 0.94238 0.94572 0.94595 0.93884 0.93182 0.94775 0.91700 0.91592 0.88985 0.79172 0.77426 0.91272 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.02 8.77 71.98 0.63 -4.39 16 2 C -0.13 -6.11 4.80 30.60 0.15 -5.96 16 3 C 0.20 10.20 2.13 44.17 0.09 10.29 16 4 H 0.03 1.85 7.26 -2.39 -0.02 1.84 16 5 C -0.50 -27.56 7.42 25.60 0.19 -27.37 16 6 H 0.05 2.76 6.91 -2.91 -0.02 2.74 16 7 C 0.02 1.36 4.38 84.65 0.37 1.73 16 8 N -0.92 -52.56 11.79 21.44 0.25 -52.30 16 9 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 N -0.52 -22.93 5.31 -861.66 -4.58 -27.50 16 14 C 0.05 1.79 5.26 86.45 0.46 2.25 16 15 C -0.10 -3.14 6.50 31.47 0.20 -2.94 16 16 C -0.01 -0.34 3.54 -10.33 -0.04 -0.38 16 17 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 18 C 0.05 1.23 5.99 88.52 0.53 1.76 16 19 N -0.50 -14.71 10.07 -191.44 -1.93 -16.64 16 20 C 0.02 0.40 11.35 83.66 0.95 1.35 16 21 C -0.25 -4.32 11.37 66.78 0.76 -3.57 16 22 S 0.15 2.90 23.18 -56.49 -1.31 1.59 16 23 C 0.04 1.62 5.84 86.61 0.51 2.13 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.99 6.74 -2.39 -0.02 1.98 16 26 H 0.04 1.80 7.89 -2.39 -0.02 1.78 16 27 H 0.04 1.61 5.91 -2.39 -0.01 1.59 16 28 H 0.04 1.98 6.08 -2.39 -0.01 1.97 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.03 1.43 5.51 -2.39 -0.01 1.42 16 31 H 0.06 2.54 7.94 -2.39 -0.02 2.52 16 32 H 0.07 2.05 7.63 -2.39 -0.02 2.03 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.04 1.78 5.29 -2.39 -0.01 1.76 16 Total: -1.00 -62.68 302.70 0.33 -62.35 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.06 Total: 11.66 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.80 Total: -25.09 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -6.25 Total: -96.45 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -62.68 0.33 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710622387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.526 kcal (2) G-P(sol) polarization free energy of solvation -62.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds