Wall clock time and date at job start Mon Mar 30 2020 07:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47425 * 181.15481 * 3 2 1 5 5 C 1.50704 * 109.47408 * 301.15475 * 3 2 1 6 6 H 1.07993 * 120.00643 * 119.99817 * 5 3 2 7 7 C 1.37879 * 119.99527 * 300.00075 * 5 3 2 8 8 N 1.31514 * 120.00038 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00250 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47118 * 90.00011 * 9 7 5 11 11 H 1.48497 * 109.47319 * 210.00045 * 9 7 5 12 12 H 1.48506 * 109.46946 * 330.00019 * 9 7 5 13 13 N 1.46905 * 109.47181 * 61.15084 * 3 2 1 14 14 C 1.47840 * 110.99772 * 59.66868 * 13 3 2 15 15 C 1.54905 * 104.79606 * 146.36166 * 14 13 3 16 16 C 1.55140 * 101.65493 * 322.92711 * 15 14 13 17 17 H 1.08994 * 110.85592 * 277.20240 * 16 15 14 18 18 C 1.50703 * 110.70632 * 154.03107 * 16 15 14 19 19 N 1.29029 * 124.91640 * 306.36816 * 18 16 15 20 20 C 1.31787 * 117.12300 * 180.02562 * 19 18 16 21 21 C 1.33644 * 114.49946 * 359.97438 * 20 19 18 22 22 S 1.70972 * 124.91472 * 126.40348 * 18 16 15 23 23 C 1.47449 * 111.00002 * 180.51022 * 13 3 2 24 24 H 1.09001 * 109.47053 * 65.49242 * 1 2 3 25 25 H 1.09008 * 109.47000 * 185.49350 * 1 2 3 26 26 H 1.08999 * 109.47647 * 305.49188 * 1 2 3 27 27 H 1.08996 * 109.46862 * 240.00321 * 2 1 3 28 28 H 1.08995 * 109.47026 * 119.99889 * 2 1 3 29 29 H 0.96998 * 120.00110 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.37733 * 265.19302 * 14 13 3 31 31 H 1.09006 * 110.37674 * 27.53237 * 14 13 3 32 32 H 1.09007 * 110.99417 * 204.83835 * 15 14 13 33 33 H 1.08999 * 110.98930 * 81.02632 * 15 14 13 34 34 H 1.07993 * 122.74702 * 180.02562 * 20 19 18 35 35 H 1.07994 * 126.03752 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.88460 * 117.33672 * 23 13 3 37 37 H 1.09002 * 110.02052 * 356.22695 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4427 -0.0207 5 6 1.5144 2.1612 -1.2159 6 1 0.8955 3.0385 -1.0992 7 6 1.8237 1.6985 -2.4774 8 7 1.3646 2.3253 -3.5385 9 14 2.8947 0.1814 -2.6793 10 1 2.0358 -1.0294 -2.7163 11 1 3.6625 0.2826 -3.9464 12 1 3.8371 0.0851 -1.5357 13 7 1.5731 2.1269 1.2131 14 6 2.0638 1.4437 2.4289 15 6 2.2914 2.5802 3.4567 16 6 2.8303 3.7186 2.5509 17 1 3.8994 3.6007 2.3742 18 6 2.5379 5.0664 3.1583 19 7 1.3707 5.4713 3.5305 20 6 1.2902 6.6824 4.0437 21 6 2.4545 7.3354 4.1085 22 16 3.7048 6.2808 3.4532 23 6 2.0363 3.5265 1.2417 24 1 -0.3633 0.4263 -0.9351 25 1 -0.3633 -1.0230 0.0984 26 1 -0.3634 0.5966 0.8367 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5825 2.0001 -4.4260 30 1 1.3157 0.7423 2.7982 31 1 3.0006 0.9264 2.2216 32 1 3.0324 2.2902 4.2018 33 1 1.3544 2.8699 3.9323 34 1 0.3599 7.1117 4.3848 35 1 2.6027 8.3335 4.4933 36 1 1.1802 4.2008 1.2248 37 1 2.6806 3.7239 0.3849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710622388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:30 Heat of formation + Delta-G solvation = 56.202293 kcal Electronic energy + Delta-G solvation = -18442.538280 eV Core-core repulsion = 15732.910153 eV Total energy + Delta-G solvation = -2709.628127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84989 -38.37338 -34.75944 -31.98770 -30.96533 -29.44574 -28.21936 -26.40690 -24.85508 -23.09609 -21.44253 -21.32982 -19.16351 -19.04119 -18.03119 -16.30769 -15.71019 -15.45422 -15.07157 -14.41128 -14.31288 -13.56445 -13.52713 -13.09611 -12.86290 -12.58268 -12.39931 -12.16806 -11.51301 -11.45557 -11.24197 -11.04670 -10.87151 -10.60791 -10.47742 -10.42830 -10.05014 -9.90651 -9.49558 -9.34174 -9.28858 -8.96914 -8.79261 -8.52145 -7.31739 -6.04878 -4.01905 0.74857 1.39030 1.78002 2.90446 3.27773 3.36407 3.38651 4.17456 4.41073 4.80347 4.94133 4.99732 5.13971 5.21783 5.32688 5.46179 5.53808 5.72787 5.80808 6.06764 6.08973 6.17743 6.19999 6.24877 6.38721 6.45909 6.56858 6.71245 6.73900 6.89745 7.11017 7.14748 7.47945 7.62019 7.83471 7.96475 8.04672 8.66998 9.03755 9.57580 11.08118 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.005392 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.753005 B = 5191.882141 C = 5557.924425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C 0.179 3.821 4 H -0.003 1.003 5 C -0.498 4.498 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.506 5.506 14 C 0.041 3.959 15 C -0.110 4.110 16 C -0.045 4.045 17 H 0.090 0.910 18 C 0.085 3.915 19 N -0.469 5.469 20 C 0.045 3.955 21 C -0.272 4.272 22 S 0.100 5.900 23 C 0.075 3.925 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.076 0.924 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 4.964 15.487 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C 0.071 3.929 4 H 0.015 0.985 5 C -0.536 4.536 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.230 5.230 14 C -0.087 4.087 15 C -0.150 4.150 16 C -0.068 4.068 17 H 0.108 0.892 18 C -0.194 4.194 19 N -0.183 5.183 20 C -0.107 4.107 21 C -0.411 4.411 22 S 0.355 5.645 23 C -0.054 4.054 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.094 0.906 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.699 4.718 15.043 16.451 hybrid contribution 0.682 -0.317 0.013 0.753 sum 5.382 4.401 15.055 16.583 Atomic orbital electron populations 1.21483 0.95263 0.98082 1.03471 1.21837 0.97680 0.97916 0.98265 1.19968 0.92794 0.91094 0.89015 0.98509 1.20896 1.31741 1.13142 0.87802 0.90048 1.24883 0.95579 0.96612 0.95911 1.69880 1.45440 1.40411 0.98005 0.86960 0.81035 0.84123 0.76740 1.20407 1.22565 1.19522 1.63547 1.57240 1.00642 1.01569 1.23026 0.98448 0.96170 0.91040 1.22756 1.01482 0.93786 0.96991 1.21319 1.00871 0.87091 0.97538 0.89171 1.27001 0.90687 1.00767 1.00920 1.66210 1.23888 1.14725 1.13442 1.21843 0.98929 0.89785 1.00120 1.26985 0.95883 1.05917 1.12341 1.84009 1.14890 1.08928 1.56635 1.22696 0.97905 0.91862 0.92986 0.91611 0.96035 0.92166 0.93802 0.94775 0.92696 0.90657 0.94316 0.91526 0.89717 0.80946 0.80913 0.90573 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.47 37.16 0.35 -2.30 16 2 C -0.12 -2.60 4.97 -26.73 -0.13 -2.73 16 3 C 0.18 4.15 0.95 -68.86 -0.07 4.09 16 4 H 0.00 -0.06 7.15 -51.93 -0.37 -0.43 16 5 C -0.50 -13.58 7.04 -34.44 -0.24 -13.82 16 6 H 0.08 2.46 7.66 -52.49 -0.40 2.06 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.79 24.36 -169.99 -4.14 17.65 16 10 H -0.28 -6.73 6.88 56.52 0.39 -6.34 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 13 N -0.51 -10.31 4.21 -224.67 -0.95 -11.25 16 14 C 0.04 0.69 5.38 -2.30 -0.01 0.67 16 15 C -0.11 -1.59 6.51 -24.59 -0.16 -1.75 16 16 C -0.04 -0.69 3.43 -89.95 -0.31 -1.00 16 17 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.08 1.24 5.97 -13.45 -0.08 1.16 16 19 N -0.47 -7.20 10.06 -11.86 -0.12 -7.32 16 20 C 0.04 0.55 11.35 -19.18 -0.22 0.33 16 21 C -0.27 -2.92 11.37 29.12 0.33 -2.59 16 22 S 0.10 1.19 23.18 -107.50 -2.49 -1.31 16 23 C 0.08 1.45 5.62 -2.83 -0.02 1.44 16 24 H 0.06 1.56 7.39 -51.93 -0.38 1.17 16 25 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 1.24 7.48 -51.93 -0.39 0.85 16 27 H 0.04 1.01 3.30 -51.93 -0.17 0.84 16 28 H 0.03 0.66 7.03 -51.93 -0.36 0.29 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.63 7.60 -51.93 -0.39 0.24 16 32 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.08 1.29 7.80 -51.93 -0.41 0.88 16 34 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.08 1.58 7.67 -51.93 -0.40 1.19 16 37 H 0.07 1.49 7.04 -51.93 -0.37 1.12 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -30.16 300.89 -8.40 -38.57 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.36 Total: 0.08 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.65 Total: -14.57 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.29 Total: -44.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.16 -8.40 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710622388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.767 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds