Wall clock time and date at job start Mon Mar 30 2020 07:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47425 * 181.15481 * 3 2 1 5 5 C 1.50704 * 109.47408 * 301.15475 * 3 2 1 6 6 H 1.07993 * 120.00643 * 119.99817 * 5 3 2 7 7 C 1.37879 * 119.99527 * 300.00075 * 5 3 2 8 8 N 1.31514 * 120.00038 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00250 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47118 * 90.00011 * 9 7 5 11 11 H 1.48497 * 109.47319 * 210.00045 * 9 7 5 12 12 H 1.48506 * 109.46946 * 330.00019 * 9 7 5 13 13 N 1.46905 * 109.47181 * 61.15084 * 3 2 1 14 14 C 1.47840 * 110.99772 * 59.66868 * 13 3 2 15 15 C 1.54905 * 104.79606 * 146.36166 * 14 13 3 16 16 C 1.55140 * 101.65493 * 322.92711 * 15 14 13 17 17 H 1.08994 * 110.85592 * 277.20240 * 16 15 14 18 18 C 1.50703 * 110.70632 * 154.03107 * 16 15 14 19 19 N 1.29029 * 124.91640 * 306.36816 * 18 16 15 20 20 C 1.31787 * 117.12300 * 180.02562 * 19 18 16 21 21 C 1.33644 * 114.49946 * 359.97438 * 20 19 18 22 22 S 1.70972 * 124.91472 * 126.40348 * 18 16 15 23 23 C 1.47449 * 111.00002 * 180.51022 * 13 3 2 24 24 H 1.09001 * 109.47053 * 65.49242 * 1 2 3 25 25 H 1.09008 * 109.47000 * 185.49350 * 1 2 3 26 26 H 1.08999 * 109.47647 * 305.49188 * 1 2 3 27 27 H 1.08996 * 109.46862 * 240.00321 * 2 1 3 28 28 H 1.08995 * 109.47026 * 119.99889 * 2 1 3 29 29 H 0.96998 * 120.00110 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.37733 * 265.19302 * 14 13 3 31 31 H 1.09006 * 110.37674 * 27.53237 * 14 13 3 32 32 H 1.09007 * 110.99417 * 204.83835 * 15 14 13 33 33 H 1.08999 * 110.98930 * 81.02632 * 15 14 13 34 34 H 1.07993 * 122.74702 * 180.02562 * 20 19 18 35 35 H 1.07994 * 126.03752 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.88460 * 117.33672 * 23 13 3 37 37 H 1.09002 * 110.02052 * 356.22695 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4427 -0.0207 5 6 1.5144 2.1612 -1.2159 6 1 0.8955 3.0385 -1.0992 7 6 1.8237 1.6985 -2.4774 8 7 1.3646 2.3253 -3.5385 9 14 2.8947 0.1814 -2.6793 10 1 2.0358 -1.0294 -2.7163 11 1 3.6625 0.2826 -3.9464 12 1 3.8371 0.0851 -1.5357 13 7 1.5731 2.1269 1.2131 14 6 2.0638 1.4437 2.4289 15 6 2.2914 2.5802 3.4567 16 6 2.8303 3.7186 2.5509 17 1 3.8994 3.6007 2.3742 18 6 2.5379 5.0664 3.1583 19 7 1.3707 5.4713 3.5305 20 6 1.2902 6.6824 4.0437 21 6 2.4545 7.3354 4.1085 22 16 3.7048 6.2808 3.4532 23 6 2.0363 3.5265 1.2417 24 1 -0.3633 0.4263 -0.9351 25 1 -0.3633 -1.0230 0.0984 26 1 -0.3634 0.5966 0.8367 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5825 2.0001 -4.4260 30 1 1.3157 0.7423 2.7982 31 1 3.0006 0.9264 2.2216 32 1 3.0324 2.2902 4.2018 33 1 1.3544 2.8699 3.9323 34 1 0.3599 7.1117 4.3848 35 1 2.6027 8.3335 4.4933 36 1 1.1802 4.2008 1.2248 37 1 2.6806 3.7239 0.3849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710622388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:29 Heat of formation + Delta-G solvation = 35.607268 kcal Electronic energy + Delta-G solvation = -18443.431347 eV Core-core repulsion = 15732.910153 eV Total energy + Delta-G solvation = -2710.521194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97336 -39.76295 -36.41266 -33.98651 -32.33963 -30.85021 -29.42237 -28.27708 -26.10946 -24.80212 -22.96196 -22.54273 -20.83689 -20.16698 -19.11260 -18.31906 -17.25056 -16.84774 -16.40299 -15.92621 -15.35610 -15.12139 -14.81869 -14.72670 -14.47372 -14.21274 -13.96803 -13.66069 -12.98709 -12.88702 -12.53511 -12.42293 -12.41119 -12.35500 -12.12854 -11.92219 -11.72639 -11.62712 -11.22421 -10.92616 -10.65565 -10.51382 -10.30885 -9.77440 -8.92765 -8.24996 -6.25674 -0.22317 0.44423 0.83214 1.31132 1.34359 1.44256 1.91805 2.33390 3.07570 3.12383 3.36137 3.73674 3.83767 3.94970 4.34389 4.40682 4.41703 4.44158 4.46102 4.56877 4.59878 4.65184 4.78103 4.94256 4.97666 5.06081 5.13213 5.18180 5.23132 5.33701 5.35503 5.37087 5.66619 5.77740 6.09263 6.33904 6.71813 6.79871 6.86774 7.37687 8.92150 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.005392 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.753005 B = 5191.882141 C = 5557.924425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.185 3.815 4 H -0.008 1.008 5 C -0.490 4.490 6 H 0.032 0.968 7 C 0.015 3.985 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.523 5.523 14 C 0.039 3.961 15 C -0.097 4.097 16 C -0.036 4.036 17 H 0.105 0.895 18 C 0.050 3.950 19 N -0.499 5.499 20 C 0.020 3.980 21 C -0.253 4.253 22 S 0.134 5.866 23 C 0.081 3.919 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.194 0.806 35 H 0.209 0.791 36 H 0.048 0.952 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 4.095 18.156 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 C 0.077 3.923 4 H 0.009 0.991 5 C -0.528 4.528 6 H 0.051 0.949 7 C -0.182 4.182 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.173 1.173 13 N -0.247 5.247 14 C -0.088 4.088 15 C -0.137 4.137 16 C -0.059 4.059 17 H 0.123 0.877 18 C -0.228 4.228 19 N -0.214 5.214 20 C -0.131 4.131 21 C -0.391 4.391 22 S 0.389 5.611 23 C -0.049 4.049 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.211 0.789 35 H 0.226 0.774 36 H 0.066 0.934 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.327 3.840 17.747 19.229 hybrid contribution 0.110 0.148 -0.759 0.782 sum 6.437 3.988 16.988 18.599 Atomic orbital electron populations 1.21383 0.95044 0.99704 1.01420 1.21816 0.97885 0.96599 0.99449 1.19768 0.92096 0.91980 0.88493 0.99058 1.21048 1.30173 1.11679 0.89947 0.94931 1.25689 0.97162 0.99896 0.95476 1.70041 1.47771 1.42696 0.98617 0.85957 0.79617 0.80406 0.77095 1.19172 1.22855 1.17298 1.63412 1.58075 1.01158 1.02104 1.23146 0.99129 0.96903 0.89669 1.22679 1.01959 0.92305 0.96747 1.21152 1.00858 0.88558 0.95316 0.87669 1.26811 0.91770 1.01422 1.02749 1.66183 1.24873 1.16434 1.13874 1.22212 1.00570 0.89325 1.00962 1.27456 0.94789 1.06789 1.10111 1.83835 1.13868 1.07702 1.55707 1.22442 0.96802 0.91094 0.94578 0.95378 0.92888 0.92120 0.94719 0.91190 0.92740 0.89518 0.93235 0.88153 0.90731 0.78928 0.77419 0.93367 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.47 71.98 0.68 -4.17 16 2 C -0.12 -4.98 4.97 30.59 0.15 -4.83 16 3 C 0.18 8.56 0.95 44.17 0.04 8.60 16 4 H -0.01 -0.38 7.15 -2.39 -0.02 -0.39 16 5 C -0.49 -27.92 7.04 25.60 0.18 -27.74 16 6 H 0.03 2.12 7.66 -2.91 -0.02 2.10 16 7 C 0.01 0.85 5.45 84.66 0.46 1.31 16 8 N -0.95 -59.99 13.96 21.45 0.30 -59.70 16 9 Si 0.94 45.02 24.36 68.60 1.67 46.69 16 10 H -0.27 -12.14 6.88 99.48 0.68 -11.46 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 13 N -0.52 -21.37 4.21 -864.74 -3.64 -25.01 16 14 C 0.04 1.20 5.38 86.77 0.47 1.67 16 15 C -0.10 -2.59 6.51 31.98 0.21 -2.38 16 16 C -0.04 -1.07 3.43 -10.36 -0.04 -1.10 16 17 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 18 C 0.05 1.42 5.97 88.52 0.53 1.95 16 19 N -0.50 -15.09 10.06 -191.44 -1.93 -17.02 16 20 C 0.02 0.45 11.35 83.66 0.95 1.40 16 21 C -0.25 -4.72 11.37 66.78 0.76 -3.96 16 22 S 0.13 2.90 23.18 -56.49 -1.31 1.59 16 23 C 0.08 3.24 5.62 86.65 0.49 3.73 16 24 H 0.03 1.33 7.39 -2.39 -0.02 1.31 16 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.06 2.45 7.48 -2.39 -0.02 2.43 16 27 H 0.03 1.51 3.30 -2.39 -0.01 1.50 16 28 H 0.07 2.42 7.03 -2.39 -0.02 2.41 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.05 1.45 7.60 -2.38 -0.02 1.43 16 32 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 34 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.05 2.15 7.67 -2.39 -0.02 2.14 16 37 H 0.04 1.79 7.04 -2.39 -0.02 1.77 16 Total: -1.00 -68.99 300.89 0.94 -68.04 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.97 Total: 10.94 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.88 Total: -25.53 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -5.27 Total: -101.73 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -68.99 0.94 -68.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710622388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.649 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds