Wall clock time and date at job start Mon Mar 30 2020 07:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29753 * 119.99745 * 2 1 4 4 N 1.40104 * 120.00536 * 0.02562 * 3 2 1 5 5 C 1.46497 * 120.00700 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46725 * 30.00311 * 5 4 3 7 7 C 1.52997 * 109.47188 * 270.00475 * 5 4 3 8 8 C 1.50697 * 109.47081 * 150.00039 * 5 4 3 9 9 H 1.07999 * 120.00055 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99687 * 180.02562 * 8 5 4 11 11 N 1.31511 * 120.00458 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99926 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47262 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46882 * 119.99668 * 12 10 8 15 15 H 1.48493 * 109.47394 * 239.99732 * 12 10 8 16 16 C 1.47423 * 120.00019 * 180.02562 * 2 1 3 17 17 C 1.39646 * 120.16071 * 359.71716 * 16 2 1 18 18 C 1.37892 * 119.92071 * 179.69768 * 17 16 2 19 19 C 1.38664 * 120.24536 * 0.58542 * 18 17 16 20 20 F 1.35100 * 119.84292 * 179.73888 * 19 18 17 21 21 C 1.38455 * 120.31560 * 359.71466 * 19 18 17 22 22 C 1.38445 * 120.07862 * 359.97438 * 21 19 18 23 23 O 1.35834 * 120.12547 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47262 * 89.99738 * 1 2 3 25 25 H 1.08996 * 109.46567 * 210.00017 * 1 2 3 26 26 H 1.09000 * 109.47221 * 329.99634 * 1 2 3 27 27 H 0.97007 * 119.99230 * 0.02562 * 4 3 2 28 28 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 30 30 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 31 31 H 0.96999 * 120.00480 * 179.97438 * 11 10 8 32 32 H 1.07994 * 120.03814 * 359.97438 * 17 16 2 33 33 H 1.08001 * 119.88048 * 180.27943 * 18 17 16 34 34 H 1.08006 * 119.95946 * 179.97438 * 21 19 18 35 35 H 0.96701 * 114.00383 * 270.01706 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4758 -0.5128 7 6 2.4428 4.0468 1.4438 8 6 1.3732 4.6563 -0.7088 9 1 0.4064 4.4042 -1.1190 10 6 1.8622 5.9393 -0.8346 11 7 3.0392 6.2465 -0.3347 12 14 0.8523 7.2418 -1.7140 13 1 -0.4260 6.6463 -2.1795 14 1 0.5656 8.3601 -0.7799 15 1 1.6140 7.7545 -2.8810 16 6 2.2442 -1.2767 -0.0006 17 6 1.5493 -2.4880 0.0048 18 6 2.2438 -3.6793 -0.0020 19 6 3.6304 -3.6795 -0.0021 20 9 4.3025 -4.8514 -0.0035 21 6 4.3294 -2.4844 -0.0012 22 6 3.6456 -1.2806 -0.0007 23 8 4.3304 -0.1075 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 0.4852 2.3370 0.0013 28 1 1.4904 4.1769 1.9577 29 1 2.9881 4.9906 1.4441 30 1 3.0319 3.2870 1.9573 31 1 3.3834 7.1490 -0.4236 32 1 0.4694 -2.4918 0.0099 33 1 1.7057 -4.6158 -0.0024 34 1 5.4095 -2.4912 -0.0008 35 1 4.5283 0.2314 0.8845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:29 Heat of formation + Delta-G solvation = -19.676396 kcal Electronic energy + Delta-G solvation = -19494.668300 eV Core-core repulsion = 16215.536650 eV Total energy + Delta-G solvation = -3279.131650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.90419 -39.63685 -36.85104 -36.28544 -34.39974 -32.06125 -30.50027 -29.61230 -28.29094 -26.74444 -25.23598 -23.02859 -22.59836 -20.53558 -19.20020 -18.48924 -17.25549 -16.56500 -16.43424 -15.66519 -15.58731 -15.04116 -14.69962 -14.52352 -13.99963 -13.66441 -13.60518 -13.38077 -12.62716 -12.48547 -12.03039 -11.93347 -11.80101 -11.38074 -11.31115 -11.07564 -10.80478 -10.63242 -10.47719 -10.26766 -10.18535 -9.38046 -9.05348 -8.94632 -8.67057 -8.49137 -6.77081 -6.16573 -4.24842 0.91386 1.17652 2.82483 3.21508 3.29353 3.32254 3.73266 3.75455 4.08160 4.34071 4.56278 4.74752 4.87442 4.94583 5.16244 5.32256 5.47791 5.61247 5.76034 5.79302 5.97021 6.00100 6.09239 6.27202 6.53324 6.69014 6.78858 6.93929 6.98289 7.11033 7.54909 7.75154 7.81688 7.93786 8.11758 8.26128 8.82531 9.28229 9.42165 10.89292 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.003906 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.509243 B = 7166.203677 C = 7560.467074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.004 4.004 3 N -0.163 5.163 4 N -0.617 5.617 5 C 0.295 3.705 6 H 0.045 0.955 7 C -0.149 4.149 8 C -0.531 4.531 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.031 4.031 17 C -0.077 4.077 18 C -0.161 4.161 19 C 0.098 3.902 20 F -0.143 7.143 21 C -0.182 4.182 22 C 0.152 3.848 23 O -0.468 6.468 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.369 0.631 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -16.133 2.988 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.190 4.190 3 N 0.022 4.978 4 N -0.355 5.355 5 C 0.193 3.807 6 H 0.062 0.938 7 C -0.208 4.208 8 C -0.570 4.570 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.034 4.034 17 C -0.098 4.098 18 C -0.180 4.180 19 C 0.077 3.923 20 F -0.122 7.122 21 C -0.201 4.201 22 C 0.104 3.896 23 O -0.278 6.278 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.207 0.793 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.825 -15.400 2.402 15.608 hybrid contribution -1.520 0.429 0.022 1.580 sum -2.346 -14.971 2.424 15.346 Atomic orbital electron populations 1.20955 0.93202 1.02546 1.02248 1.22081 0.92589 0.90675 1.13679 1.74315 1.27504 0.92861 1.03165 1.49242 1.06358 1.00652 1.79202 1.18573 0.92923 0.76231 0.92979 0.93751 1.22198 0.99151 1.01812 0.97669 1.21263 1.04543 0.94403 1.36812 0.92214 1.24849 0.95116 0.98234 0.95375 1.69890 1.17383 1.20287 1.44714 0.86381 0.80094 0.81221 0.79343 1.19785 1.20838 1.20797 1.18778 0.91874 0.91725 1.00995 1.20935 1.00201 0.89973 0.98706 1.20950 0.92049 0.99496 1.05488 1.17483 0.90026 0.80742 1.04021 1.91478 1.80678 1.45956 1.94082 1.21312 1.01303 0.90869 1.06647 1.18235 0.88839 0.85446 0.97093 1.84855 1.74868 1.34898 1.33155 0.91519 0.91342 0.91851 0.79319 0.95614 0.89132 0.96906 0.92596 0.84390 0.84743 0.84349 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.04 36.01 0.33 -1.42 16 2 C 0.00 -0.07 7.10 -79.73 -0.57 -0.64 16 3 N -0.16 -3.22 9.34 35.10 0.33 -2.89 16 4 N -0.62 -13.28 5.95 -5.89 -0.04 -13.32 16 5 C 0.30 7.36 3.23 -69.09 -0.22 7.14 16 6 H 0.04 1.25 8.14 -51.93 -0.42 0.82 16 7 C -0.15 -3.55 9.29 37.16 0.35 -3.21 16 8 C -0.53 -14.10 8.74 -34.44 -0.30 -14.40 16 9 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 11 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 12 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.03 -0.44 5.88 -104.92 -0.62 -1.06 16 17 C -0.08 -0.88 9.36 -39.18 -0.37 -1.25 16 18 C -0.16 -1.73 10.00 -39.55 -0.40 -2.13 16 19 C 0.10 1.19 7.30 -39.34 -0.29 0.90 16 20 F -0.14 -1.76 17.26 2.25 0.04 -1.72 16 21 C -0.18 -2.33 9.95 -39.43 -0.39 -2.72 16 22 C 0.15 2.22 6.71 -38.79 -0.26 1.96 16 23 O -0.47 -7.43 11.37 -19.22 -0.22 -7.65 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.72 6.46 -51.93 -0.34 0.38 16 26 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 27 H 0.37 7.41 6.36 -182.59 -1.16 6.24 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.14 1.24 6.35 -52.49 -0.33 0.90 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.39 5.01 9.06 45.56 0.41 5.42 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -29.05 303.45 -6.68 -35.73 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.14 Total: 8.56 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.83 Total: -15.12 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.92 Total: -39.96 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.22 Total: -7.65 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.05 -6.68 -35.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.053 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds