Wall clock time and date at job start Mon Mar 30 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29753 * 119.99745 * 2 1 4 4 N 1.40104 * 120.00536 * 0.02562 * 3 2 1 5 5 C 1.46497 * 120.00700 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46725 * 30.00311 * 5 4 3 7 7 C 1.52997 * 109.47188 * 270.00475 * 5 4 3 8 8 C 1.50697 * 109.47081 * 150.00039 * 5 4 3 9 9 H 1.07999 * 120.00055 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99687 * 180.02562 * 8 5 4 11 11 N 1.31511 * 120.00458 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99926 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47262 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46882 * 119.99668 * 12 10 8 15 15 H 1.48493 * 109.47394 * 239.99732 * 12 10 8 16 16 C 1.47423 * 120.00019 * 180.02562 * 2 1 3 17 17 C 1.39646 * 120.16071 * 359.71716 * 16 2 1 18 18 C 1.37892 * 119.92071 * 179.69768 * 17 16 2 19 19 C 1.38664 * 120.24536 * 0.58542 * 18 17 16 20 20 F 1.35100 * 119.84292 * 179.73888 * 19 18 17 21 21 C 1.38455 * 120.31560 * 359.71466 * 19 18 17 22 22 C 1.38445 * 120.07862 * 359.97438 * 21 19 18 23 23 O 1.35834 * 120.12547 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47262 * 89.99738 * 1 2 3 25 25 H 1.08996 * 109.46567 * 210.00017 * 1 2 3 26 26 H 1.09000 * 109.47221 * 329.99634 * 1 2 3 27 27 H 0.97007 * 119.99230 * 0.02562 * 4 3 2 28 28 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 30 30 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 31 31 H 0.96999 * 120.00480 * 179.97438 * 11 10 8 32 32 H 1.07994 * 120.03814 * 359.97438 * 17 16 2 33 33 H 1.08001 * 119.88048 * 180.27943 * 18 17 16 34 34 H 1.08006 * 119.95946 * 179.97438 * 21 19 18 35 35 H 0.96701 * 114.00383 * 270.01706 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4758 -0.5128 7 6 2.4428 4.0468 1.4438 8 6 1.3732 4.6563 -0.7088 9 1 0.4064 4.4042 -1.1190 10 6 1.8622 5.9393 -0.8346 11 7 3.0392 6.2465 -0.3347 12 14 0.8523 7.2418 -1.7140 13 1 -0.4260 6.6463 -2.1795 14 1 0.5656 8.3601 -0.7799 15 1 1.6140 7.7545 -2.8810 16 6 2.2442 -1.2767 -0.0006 17 6 1.5493 -2.4880 0.0048 18 6 2.2438 -3.6793 -0.0020 19 6 3.6304 -3.6795 -0.0021 20 9 4.3025 -4.8514 -0.0035 21 6 4.3294 -2.4844 -0.0012 22 6 3.6456 -1.2806 -0.0007 23 8 4.3304 -0.1075 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 0.4852 2.3370 0.0013 28 1 1.4904 4.1769 1.9577 29 1 2.9881 4.9906 1.4441 30 1 3.0319 3.2870 1.9573 31 1 3.3834 7.1490 -0.4236 32 1 0.4694 -2.4918 0.0099 33 1 1.7057 -4.6158 -0.0024 34 1 5.4095 -2.4912 -0.0008 35 1 4.5283 0.2314 0.8845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:28 Heat of formation + Delta-G solvation = -38.570847 kcal Electronic energy + Delta-G solvation = -19495.487625 eV Core-core repulsion = 16215.536650 eV Total energy + Delta-G solvation = -3279.950975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88971 -40.71930 -38.29199 -37.39701 -36.13727 -33.72434 -31.79272 -30.83365 -29.43923 -28.26231 -27.24466 -24.19410 -23.61700 -22.28921 -20.55114 -19.60279 -18.79031 -17.82151 -17.49751 -17.20790 -16.73215 -16.57675 -15.94670 -15.69510 -15.27265 -14.98646 -14.79981 -14.60867 -14.35173 -13.86316 -13.51497 -13.15589 -12.93823 -12.90945 -12.87825 -12.63575 -12.30535 -12.29030 -12.11803 -11.87517 -11.76310 -11.07757 -10.61574 -10.55700 -9.98529 -9.74083 -8.30131 -8.14577 -6.33937 -0.15860 0.21340 1.41818 1.43012 1.54520 1.63695 2.22700 2.49290 2.67294 3.06566 3.11938 3.56111 3.66827 3.84488 4.06890 4.30980 4.38854 4.55343 4.70645 4.75687 4.78225 4.98457 5.00163 5.05466 5.11040 5.15354 5.23428 5.44175 5.46966 5.59294 5.81072 5.85606 5.92438 6.22019 6.44440 6.86365 6.87054 7.37860 7.85189 8.87804 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.003906 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.509243 B = 7166.203677 C = 7560.467074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.029 3.971 3 N -0.216 5.216 4 N -0.638 5.638 5 C 0.308 3.692 6 H -0.001 1.001 7 C -0.134 4.134 8 C -0.548 4.548 9 H 0.059 0.941 10 C 0.019 3.981 11 N -0.914 5.914 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.281 1.281 16 C -0.065 4.065 17 C -0.056 4.056 18 C -0.151 4.151 19 C 0.102 3.898 20 F -0.142 7.142 21 C -0.190 4.190 22 C 0.138 3.862 23 O -0.491 6.491 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.372 0.628 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -18.502 2.865 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 N -0.028 5.028 4 N -0.376 5.376 5 C 0.204 3.796 6 H 0.017 0.983 7 C -0.193 4.193 8 C -0.587 4.587 9 H 0.077 0.923 10 C -0.181 4.181 11 N -0.552 5.552 12 Si 0.793 3.207 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.207 1.207 16 C -0.068 4.068 17 C -0.076 4.076 18 C -0.170 4.170 19 C 0.081 3.919 20 F -0.121 7.121 21 C -0.209 4.209 22 C 0.090 3.910 23 O -0.302 6.302 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.074 0.926 27 H 0.211 0.789 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.163 0.837 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.737 -17.789 2.286 18.143 hybrid contribution -0.877 0.794 0.065 1.184 sum -3.614 -16.996 2.351 17.534 Atomic orbital electron populations 1.21081 0.90842 1.04042 1.03290 1.22856 0.94577 0.90534 1.07990 1.74365 1.28015 0.93030 1.07362 1.48642 1.05941 1.00433 1.82559 1.18080 0.91090 0.77917 0.92528 0.98277 1.21992 0.98977 1.00743 0.97588 1.21567 1.04700 0.95257 1.37140 0.92261 1.25685 0.96122 1.00265 0.96016 1.70019 1.18765 1.20787 1.45628 0.85356 0.78670 0.78528 0.78120 1.19105 1.20117 1.20695 1.18965 0.91898 0.92024 1.03879 1.21271 1.01710 0.88645 0.96018 1.21321 0.91338 1.00727 1.03583 1.17683 0.90833 0.80347 1.03002 1.91490 1.80858 1.45787 1.93953 1.21367 1.01869 0.90711 1.06957 1.18490 0.89347 0.85453 0.97722 1.84822 1.75300 1.35929 1.34160 0.90548 0.87522 0.92648 0.78896 0.95242 0.91476 0.96015 0.92463 0.81105 0.81215 0.83694 0.74158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.04 71.24 0.64 -2.58 16 2 C 0.03 0.91 7.10 45.29 0.32 1.23 16 3 N -0.22 -8.72 9.34 -42.86 -0.40 -9.12 16 4 N -0.64 -28.35 5.95 -172.53 -1.03 -29.38 16 5 C 0.31 16.10 3.23 44.24 0.14 16.24 16 6 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 7 C -0.13 -6.63 9.29 71.98 0.67 -5.96 16 8 C -0.55 -29.91 8.74 25.60 0.22 -29.69 16 9 H 0.06 3.15 7.79 -2.91 -0.02 3.13 16 10 C 0.02 1.05 5.30 84.66 0.45 1.50 16 11 N -0.91 -51.87 11.32 21.45 0.24 -51.62 16 12 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 C -0.06 -1.74 5.88 -20.06 -0.12 -1.86 16 17 C -0.06 -1.04 9.36 22.53 0.21 -0.83 16 18 C -0.15 -2.56 10.00 22.29 0.22 -2.34 16 19 C 0.10 2.18 7.30 22.42 0.16 2.34 16 20 F -0.14 -3.08 17.26 44.97 0.78 -2.31 16 21 C -0.19 -4.62 9.95 22.37 0.22 -4.39 16 22 C 0.14 3.95 6.71 22.78 0.15 4.11 16 23 O -0.49 -16.21 11.37 -91.69 -1.04 -17.25 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.11 1.73 6.46 -2.39 -0.02 1.72 16 26 H 0.05 1.47 6.35 -2.39 -0.02 1.45 16 27 H 0.37 15.27 6.36 -213.31 -1.36 13.92 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 30 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.17 2.02 6.35 -2.91 -0.02 2.00 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.40 10.98 9.06 -74.06 -0.67 10.31 16 Total: -1.00 -64.96 303.45 2.99 -61.97 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.89 Total: 25.25 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.31 Total: -22.23 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -1.18 Total: -90.12 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.04 Total: -17.25 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -64.96 2.99 -61.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.398 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds