Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47497 * 2 1 4 4 C 1.33601 * 124.99729 * 89.99862 * 3 2 1 5 5 C 1.37872 * 115.19427 * 180.02562 * 4 3 2 6 6 C 1.36230 * 114.39936 * 0.02562 * 5 4 3 7 7 C 1.46790 * 125.33980 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.99992 * 179.97438 * 7 6 5 9 9 N 1.29971 * 120.00178 * 359.97438 * 7 6 5 10 10 N 1.40099 * 120.00207 * 179.97438 * 9 7 6 11 11 C 1.46499 * 119.99756 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47065 * 329.99731 * 11 10 9 13 13 C 1.52992 * 109.47021 * 90.00464 * 11 10 9 14 14 C 1.50708 * 109.46865 * 210.00289 * 11 10 9 15 15 H 1.07996 * 119.99898 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99556 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00741 * 359.97438 * 16 14 11 18 18 Si 1.86809 * 119.99709 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47220 * 89.99797 * 18 16 14 20 20 H 1.48499 * 109.47053 * 210.00413 * 18 16 14 21 21 H 1.48503 * 109.46835 * 329.99669 * 18 16 14 22 22 S 1.75822 * 125.00456 * 270.30504 * 3 2 1 23 23 H 1.09009 * 109.46830 * 59.99918 * 1 2 3 24 24 H 1.09007 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47103 * 300.00142 * 1 2 3 26 26 H 1.09002 * 109.47270 * 240.00298 * 2 1 3 27 27 H 1.09001 * 109.47183 * 120.00599 * 2 1 3 28 28 H 1.07997 * 122.40812 * 0.02562 * 4 3 2 29 29 H 1.07996 * 122.79954 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.00105 * 8 7 6 31 31 H 1.09001 * 109.46980 * 330.00205 * 8 7 6 32 32 H 1.09004 * 109.47113 * 210.00186 * 8 7 6 33 33 H 0.96993 * 119.99942 * 0.02562 * 10 9 7 34 34 H 1.09003 * 109.47782 * 59.99944 * 13 11 10 35 35 H 1.09002 * 109.47130 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.47235 * 299.99430 * 13 11 10 37 37 H 0.96992 * 120.00244 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2878 2.1432 1.0944 5 6 2.7402 3.4243 0.8597 6 6 2.8538 3.7482 -0.4586 7 6 3.3102 5.0429 -0.9785 8 6 3.3906 5.2716 -2.4659 9 7 3.6450 5.9920 -0.1561 10 7 4.0812 7.2274 -0.6523 11 6 4.4591 8.2969 0.2748 12 1 3.8809 8.2022 1.1938 13 6 5.9508 8.1890 0.5971 14 6 4.1778 9.6346 -0.3600 15 1 3.7590 9.6830 -1.3543 16 6 4.4551 10.7963 0.3287 17 7 4.9646 10.7373 1.5397 18 14 4.1058 12.4543 -0.4577 19 1 2.7230 12.8796 -0.1229 20 1 5.0709 13.4591 0.0562 21 1 4.2459 12.3423 -1.9319 22 16 2.3614 2.3742 -1.4401 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1498 1.7519 2.0915 29 1 2.9843 4.1134 1.6546 30 1 2.4409 5.6685 -2.8244 31 1 3.6024 4.3274 -2.9678 32 1 4.1868 5.9842 -2.6815 33 1 4.1330 7.3746 -1.6096 34 1 6.5290 8.2838 -0.3221 35 1 6.2321 8.9850 1.2865 36 1 6.1542 7.2215 1.0562 37 1 5.1600 11.5546 2.0240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = 55.547738 kcal Electronic energy + Delta-G solvation = -17136.010423 eV Core-core repulsion = 14426.353912 eV Total energy + Delta-G solvation = -2709.656510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.05350 -36.83982 -34.61467 -33.43953 -31.67692 -29.23326 -27.99992 -26.46820 -25.23115 -24.49525 -22.14577 -20.91306 -19.81072 -18.59706 -16.91047 -16.28117 -15.60770 -15.04467 -14.73544 -14.31931 -14.10445 -13.87171 -13.59105 -12.95258 -12.82909 -12.50095 -12.12696 -12.04850 -11.94217 -11.75585 -11.53245 -11.34583 -11.12567 -11.03663 -10.83330 -10.57743 -10.47770 -10.25529 -10.17777 -9.52967 -9.06192 -8.62367 -8.45002 -8.27904 -6.72324 -6.16295 -4.25026 0.93047 1.69774 2.14370 2.63317 3.22779 3.29182 3.31350 3.42148 3.86193 4.35161 4.71473 4.91779 4.95039 5.15749 5.16172 5.39833 5.45716 5.63164 5.67770 5.70113 5.73426 5.79725 5.96798 6.04822 6.22227 6.32096 6.63498 6.70070 6.75708 6.94434 6.97510 7.11962 7.54503 7.74158 7.82578 8.10967 8.26162 8.82027 9.26707 9.41941 10.89545 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.003460 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.446616 B = 8091.694148 C = 8286.136413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.090 4.090 7 C 0.032 3.968 8 C -0.131 4.131 9 N -0.181 5.181 10 N -0.615 5.615 11 C 0.296 3.704 12 H 0.043 0.957 13 C -0.151 4.151 14 C -0.531 4.531 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 S 0.110 5.890 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.145 0.855 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.371 0.629 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.013 0.987 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -18.106 -4.445 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.319 4.319 4 C -0.154 4.154 5 C -0.166 4.166 6 C -0.209 4.209 7 C -0.156 4.156 8 C -0.190 4.190 9 N 0.003 4.997 10 N -0.353 5.353 11 C 0.194 3.806 12 H 0.061 0.939 13 C -0.210 4.210 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 S 0.373 5.627 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.209 0.791 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.032 0.968 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.392 -17.797 -4.759 19.195 hybrid contribution 0.021 1.302 -0.043 1.303 sum -5.371 -16.494 -4.802 17.999 Atomic orbital electron populations 1.21802 0.94677 1.01562 1.02550 1.20013 0.95876 0.90030 1.02774 1.24422 1.10862 1.00760 0.95837 1.19906 1.02458 0.94135 0.98877 1.20624 1.03424 0.96728 0.95860 1.22436 1.06981 0.95766 0.95703 1.21288 1.10062 0.92196 0.92077 1.20971 1.02455 1.02412 0.93208 1.74175 1.03113 0.93198 1.29244 1.49143 1.70559 1.07518 1.08077 1.18580 0.91570 0.81449 0.89032 0.93934 1.22209 0.98831 0.99513 1.00442 1.21221 1.43318 0.90011 1.02531 0.92196 1.24854 0.94634 0.99238 0.94847 1.69885 1.42797 1.28446 1.11177 0.86420 0.78187 0.82923 0.79431 1.20493 1.20986 1.19862 1.83838 1.65141 1.04558 1.09189 0.92497 0.92398 0.92289 0.91188 0.90345 0.84760 0.83746 0.91221 0.91592 0.91437 0.79141 0.95511 0.89072 0.96791 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.41 6.42 -27.89 -0.18 -0.59 16 3 C -0.20 -2.35 5.75 -35.93 -0.21 -2.56 16 4 C -0.12 -1.58 10.01 -41.34 -0.41 -2.00 16 5 C -0.13 -2.06 9.90 -40.44 -0.40 -2.46 16 6 C -0.09 -1.43 6.41 -36.85 -0.24 -1.67 16 7 C 0.03 0.57 7.11 -79.92 -0.57 0.00 16 8 C -0.13 -1.95 9.29 36.01 0.33 -1.62 16 9 N -0.18 -3.83 11.14 34.99 0.39 -3.44 16 10 N -0.62 -13.79 5.95 -5.88 -0.04 -13.82 16 11 C 0.30 7.58 3.23 -69.08 -0.22 7.35 16 12 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.15 -3.73 9.29 37.15 0.35 -3.38 16 14 C -0.53 -14.30 8.74 -34.44 -0.30 -14.60 16 15 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 17 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 S 0.11 1.39 22.26 -107.50 -2.39 -1.00 16 23 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.14 2.35 8.00 -52.49 -0.42 1.93 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.85 7.40 -51.93 -0.38 0.46 16 32 H 0.07 1.02 6.35 -51.93 -0.33 0.69 16 33 H 0.37 7.70 6.37 -182.60 -1.16 6.54 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -28.29 324.49 -9.50 -37.79 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.38 Total: 4.51 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.58 Total: -20.61 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.98 Total: -41.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.39 Total: -1.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.29 -9.50 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.334 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds