Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47497 * 2 1 4 4 C 1.33601 * 124.99729 * 89.99862 * 3 2 1 5 5 C 1.37872 * 115.19427 * 180.02562 * 4 3 2 6 6 C 1.36230 * 114.39936 * 0.02562 * 5 4 3 7 7 C 1.46790 * 125.33980 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.99992 * 179.97438 * 7 6 5 9 9 N 1.29971 * 120.00178 * 359.97438 * 7 6 5 10 10 N 1.40099 * 120.00207 * 179.97438 * 9 7 6 11 11 C 1.46499 * 119.99756 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47065 * 329.99731 * 11 10 9 13 13 C 1.52992 * 109.47021 * 90.00464 * 11 10 9 14 14 C 1.50708 * 109.46865 * 210.00289 * 11 10 9 15 15 H 1.07996 * 119.99898 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99556 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00741 * 359.97438 * 16 14 11 18 18 Si 1.86809 * 119.99709 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47220 * 89.99797 * 18 16 14 20 20 H 1.48499 * 109.47053 * 210.00413 * 18 16 14 21 21 H 1.48503 * 109.46835 * 329.99669 * 18 16 14 22 22 S 1.75822 * 125.00456 * 270.30504 * 3 2 1 23 23 H 1.09009 * 109.46830 * 59.99918 * 1 2 3 24 24 H 1.09007 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47103 * 300.00142 * 1 2 3 26 26 H 1.09002 * 109.47270 * 240.00298 * 2 1 3 27 27 H 1.09001 * 109.47183 * 120.00599 * 2 1 3 28 28 H 1.07997 * 122.40812 * 0.02562 * 4 3 2 29 29 H 1.07996 * 122.79954 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.00105 * 8 7 6 31 31 H 1.09001 * 109.46980 * 330.00205 * 8 7 6 32 32 H 1.09004 * 109.47113 * 210.00186 * 8 7 6 33 33 H 0.96993 * 119.99942 * 0.02562 * 10 9 7 34 34 H 1.09003 * 109.47782 * 59.99944 * 13 11 10 35 35 H 1.09002 * 109.47130 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.47235 * 299.99430 * 13 11 10 37 37 H 0.96992 * 120.00244 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2878 2.1432 1.0944 5 6 2.7402 3.4243 0.8597 6 6 2.8538 3.7482 -0.4586 7 6 3.3102 5.0429 -0.9785 8 6 3.3906 5.2716 -2.4659 9 7 3.6450 5.9920 -0.1561 10 7 4.0812 7.2274 -0.6523 11 6 4.4591 8.2969 0.2748 12 1 3.8809 8.2022 1.1938 13 6 5.9508 8.1890 0.5971 14 6 4.1778 9.6346 -0.3600 15 1 3.7590 9.6830 -1.3543 16 6 4.4551 10.7963 0.3287 17 7 4.9646 10.7373 1.5397 18 14 4.1058 12.4543 -0.4577 19 1 2.7230 12.8796 -0.1229 20 1 5.0709 13.4591 0.0562 21 1 4.2459 12.3423 -1.9319 22 16 2.3614 2.3742 -1.4401 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1498 1.7519 2.0915 29 1 2.9843 4.1134 1.6546 30 1 2.4409 5.6685 -2.8244 31 1 3.6024 4.3274 -2.9678 32 1 4.1868 5.9842 -2.6815 33 1 4.1330 7.3746 -1.6096 34 1 6.5290 8.2838 -0.3221 35 1 6.2321 8.9850 1.2865 36 1 6.1542 7.2215 1.0562 37 1 5.1600 11.5546 2.0240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = 40.518390 kcal Electronic energy + Delta-G solvation = -17136.662144 eV Core-core repulsion = 14426.353912 eV Total energy + Delta-G solvation = -2710.308232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27589 -38.23263 -36.31593 -34.55085 -33.36906 -30.81651 -29.12339 -27.99701 -27.25369 -25.55515 -23.02611 -22.63094 -21.27357 -19.97076 -18.51173 -17.52772 -17.11261 -16.82075 -16.02270 -15.56891 -15.29098 -14.98499 -14.72291 -14.60519 -14.08673 -13.90830 -13.67304 -13.26806 -13.14711 -12.92917 -12.90299 -12.84578 -12.71701 -12.33841 -12.29990 -12.13843 -11.93476 -11.89953 -11.52569 -11.16233 -10.88730 -10.60022 -9.76376 -9.33139 -8.31950 -8.17129 -6.37230 -0.23925 0.60477 1.06284 1.40706 1.42243 1.42779 1.53256 2.13922 2.22895 2.48592 3.09279 3.66303 3.89152 4.17646 4.27321 4.40423 4.49918 4.56842 4.57426 4.68593 4.72668 4.91268 4.93388 5.01863 5.05753 5.09527 5.13600 5.24652 5.33344 5.41846 5.51263 5.52695 5.64331 5.75514 5.85201 6.14895 6.38444 6.81559 7.34419 7.73256 8.85577 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.003460 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.446616 B = 8091.694148 C = 8286.136413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.178 4.178 4 C -0.144 4.144 5 C -0.128 4.128 6 C -0.145 4.145 7 C 0.065 3.935 8 C -0.133 4.133 9 N -0.238 5.238 10 N -0.634 5.634 11 C 0.307 3.693 12 H 0.000 1.000 13 C -0.136 4.136 14 C -0.549 4.549 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.265 1.265 22 S 0.156 5.844 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.156 0.844 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.375 0.625 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.016 0.984 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -20.349 -5.994 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.297 4.297 4 C -0.173 4.173 5 C -0.162 4.162 6 C -0.264 4.264 7 C -0.125 4.125 8 C -0.192 4.192 9 N -0.051 5.051 10 N -0.373 5.373 11 C 0.203 3.797 12 H 0.018 0.982 13 C -0.196 4.196 14 C -0.588 4.588 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.553 5.553 18 Si 0.796 3.204 19 H -0.202 1.202 20 H -0.204 1.204 21 H -0.190 1.190 22 S 0.420 5.580 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.174 0.826 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.214 0.786 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.449 -20.055 -6.325 21.995 hybrid contribution 0.217 1.624 0.435 1.695 sum -6.232 -18.431 -5.890 20.328 Atomic orbital electron populations 1.21802 0.93826 1.02862 1.02035 1.20219 0.96453 0.87847 1.04446 1.25015 1.07658 1.01880 0.95128 1.20039 1.03531 0.93186 1.00521 1.20764 1.02370 0.97621 0.95485 1.22599 1.10160 0.96629 0.96991 1.21991 1.05169 0.91829 0.93516 1.21067 1.03033 1.03757 0.91356 1.74194 1.06991 0.93551 1.30359 1.48556 1.73425 1.07911 1.07362 1.18132 0.91029 0.82489 0.88004 0.98232 1.22024 0.98767 0.98749 1.00010 1.21511 1.43573 0.90977 1.02734 0.92050 1.25720 0.94251 1.02860 0.95279 1.70014 1.43409 1.29454 1.12397 0.85360 0.77967 0.78281 0.78820 1.20203 1.20404 1.18964 1.83619 1.63731 1.02269 1.08412 0.93050 0.90288 0.92821 0.89679 0.88562 0.82616 0.85747 0.89975 0.89065 0.91768 0.78601 0.95021 0.91122 0.96515 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.05 -0.67 6.42 29.85 0.19 -0.48 16 3 C -0.18 -3.63 5.75 24.63 0.14 -3.49 16 4 C -0.14 -3.40 10.01 21.13 0.21 -3.19 16 5 C -0.13 -3.95 9.90 21.71 0.22 -3.73 16 6 C -0.14 -4.53 6.41 24.04 0.15 -4.38 16 7 C 0.06 2.32 7.11 45.07 0.32 2.64 16 8 C -0.13 -3.82 9.29 71.24 0.66 -3.16 16 9 N -0.24 -10.48 11.14 -43.21 -0.48 -10.97 16 10 N -0.63 -29.67 5.95 -172.53 -1.03 -30.69 16 11 C 0.31 16.56 3.23 44.25 0.14 16.70 16 12 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 13 C -0.14 -7.04 9.29 71.98 0.67 -6.37 16 14 C -0.55 -30.40 8.74 25.60 0.22 -30.18 16 15 H 0.06 3.29 7.79 -2.91 -0.02 3.27 16 16 C 0.02 1.05 5.30 84.65 0.45 1.50 16 17 N -0.91 -52.43 11.32 21.44 0.24 -52.19 16 18 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 S 0.16 3.52 22.26 -56.49 -1.26 2.27 16 23 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 29 H 0.12 4.27 8.00 -2.91 -0.02 4.25 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.13 7.40 -2.39 -0.02 2.12 16 32 H 0.06 1.92 6.35 -2.38 -0.02 1.90 16 33 H 0.38 16.11 6.37 -213.33 -1.36 14.76 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 36 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -63.14 324.49 3.30 -59.84 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.30 Total: 22.03 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.09 Total: -35.21 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -1.27 Total: -93.85 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.26 Total: 2.27 kcal Total: -63.14 3.30 -59.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.361 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds