Wall clock time and date at job start Mon Mar 30 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29712 * 120.00001 * 2 1 4 4 N 1.40105 * 119.99591 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72034 * 4 3 2 6 6 H 1.08998 * 109.47388 * 30.27291 * 5 4 3 7 7 C 1.53002 * 109.47327 * 270.27806 * 5 4 3 8 8 C 1.50704 * 109.47134 * 150.27854 * 5 4 3 9 9 H 1.08000 * 119.99799 * 359.97438 * 8 5 4 10 10 C 1.37875 * 119.99906 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00180 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99994 * 179.97438 * 10 8 5 13 13 H 1.48505 * 109.47329 * 59.99732 * 12 10 8 14 14 H 1.48498 * 109.47371 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47106 * 300.00077 * 12 10 8 16 16 C 1.47550 * 120.00197 * 180.02562 * 2 1 3 17 17 C 1.39603 * 122.82956 * 0.02562 * 16 2 1 18 18 C 1.32967 * 114.91568 * 179.97438 * 17 16 2 19 19 C 1.50697 * 124.98795 * 179.97438 * 18 17 16 20 20 S 1.75795 * 110.02284 * 0.02562 * 18 17 16 21 21 C 1.34903 * 122.82738 * 179.72950 * 16 2 1 22 22 C 1.50699 * 125.24140 * 0.02562 * 21 16 2 23 23 H 1.08997 * 109.47619 * 89.99506 * 1 2 3 24 24 H 1.09002 * 109.46744 * 209.99660 * 1 2 3 25 25 H 1.09003 * 109.47063 * 329.99184 * 1 2 3 26 26 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.46903 * 300.00205 * 7 5 4 28 28 H 1.08997 * 109.47461 * 59.99784 * 7 5 4 29 29 H 1.09000 * 109.47572 * 180.02562 * 7 5 4 30 30 H 0.96996 * 119.99825 * 180.02562 * 11 10 8 31 31 H 1.07998 * 122.54195 * 359.97438 * 17 16 2 32 32 H 1.08998 * 109.47059 * 90.00263 * 19 18 17 33 33 H 1.09004 * 109.47216 * 209.99849 * 19 18 17 34 34 H 1.08996 * 109.47663 * 330.00148 * 19 18 17 35 35 H 1.09003 * 109.47027 * 89.99704 * 22 21 16 36 36 H 1.08995 * 109.47289 * 209.99854 * 22 21 16 37 37 H 1.09002 * 109.46763 * 330.00487 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1555 1.1233 0.0000 4 7 1.4549 2.3366 0.0005 5 6 2.1874 3.6054 0.0067 6 1 3.1396 3.4777 -0.5080 7 6 2.4429 4.0397 1.4514 8 6 1.3726 4.6592 -0.6980 9 1 0.4061 4.4088 -1.1097 10 6 1.8616 5.9428 -0.8181 11 7 3.0388 6.2475 -0.3172 12 14 0.8520 7.2489 -1.6923 13 1 -0.4454 7.4233 -0.9911 14 1 1.5944 8.5350 -1.6859 15 1 0.6041 6.8268 -3.0943 16 6 2.2448 -1.2778 -0.0006 17 6 1.6073 -2.5198 -0.0017 18 6 2.4244 -3.5688 -0.0026 19 6 1.9814 -5.0092 -0.0033 20 16 4.0973 -3.0287 -0.0014 21 6 3.5921 -1.3443 -0.0060 22 6 4.5213 -0.1579 -0.0115 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 0.4849 2.3366 0.0013 27 1 1.4906 4.1674 1.9662 28 1 3.0322 3.2776 1.9612 29 1 2.9875 4.9839 1.4560 30 1 3.3826 7.1506 -0.4013 31 1 0.5321 -2.6209 -0.0017 32 1 1.8743 -5.3558 -1.0311 33 1 2.7255 -5.6184 0.5099 34 1 1.0241 -5.0952 0.5108 35 1 4.7495 0.1297 1.0149 36 1 5.4439 -0.4213 -0.5286 37 1 4.0425 0.6762 -0.5245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:09 Heat of formation + Delta-G solvation = 61.797337 kcal Electronic energy + Delta-G solvation = -17627.619178 eV Core-core repulsion = 14918.233671 eV Total energy + Delta-G solvation = -2709.385507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.61422 -36.40166 -34.24991 -32.72781 -31.37738 -29.67803 -28.30586 -26.77137 -25.23427 -24.46398 -22.74868 -20.61308 -19.48499 -17.98876 -16.74662 -16.52620 -15.42117 -15.02177 -14.58710 -14.33610 -13.73003 -13.55002 -13.11182 -12.94586 -12.75590 -12.64007 -12.34674 -12.08779 -11.92137 -11.59329 -11.43564 -11.34991 -11.29021 -11.02487 -10.81400 -10.57802 -10.42131 -10.22868 -10.12883 -9.24346 -8.94976 -8.55478 -8.34397 -8.23737 -6.66418 -6.13907 -4.22287 1.12547 1.75942 2.15026 2.32178 3.25072 3.29929 3.31435 3.62145 3.86624 4.36658 4.88145 5.14757 5.18379 5.24110 5.29924 5.41847 5.54359 5.59869 5.79863 5.81903 5.90283 5.92790 6.08652 6.18967 6.34252 6.57426 6.64890 6.78770 6.83471 7.00906 7.11010 7.17548 7.57848 7.78122 7.87027 8.16516 8.32610 8.85783 9.37054 9.44749 10.91763 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037343 B = 0.003992 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.631944 B = 7012.503051 C = 7431.134149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.036 3.964 3 N -0.195 5.195 4 N -0.625 5.625 5 C 0.298 3.702 6 H 0.041 0.959 7 C -0.150 4.150 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.035 4.035 17 C -0.116 4.116 18 C -0.193 4.193 19 C -0.077 4.077 20 S 0.073 5.927 21 C -0.150 4.150 22 C -0.087 4.087 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.369 0.631 27 H 0.025 0.975 28 H 0.012 0.988 29 H 0.089 0.911 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -17.697 1.200 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 N -0.008 5.008 4 N -0.363 5.363 5 C 0.196 3.804 6 H 0.059 0.941 7 C -0.210 4.210 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.048 4.048 17 C -0.148 4.148 18 C -0.309 4.309 19 C -0.136 4.136 20 S 0.337 5.663 21 C -0.271 4.271 22 C -0.146 4.146 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.207 0.793 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.211 -17.653 1.221 17.737 hybrid contribution -3.095 1.262 -0.396 3.366 sum -1.885 -16.391 0.825 16.520 Atomic orbital electron populations 1.20937 0.93311 1.02447 1.02096 1.21867 0.92314 0.90236 1.10948 1.74049 1.27627 0.93124 1.06025 1.49093 1.06210 1.00344 1.80633 1.18502 0.92675 0.76409 0.92837 0.94135 1.22208 0.99172 1.01742 0.97833 1.21202 1.04533 0.94317 1.36963 0.92321 1.24848 0.95115 0.98219 0.95384 1.69878 1.17381 1.20422 1.44693 0.86499 0.80000 0.80474 0.80082 1.20189 1.21082 1.20175 1.17123 0.91161 0.91629 1.04895 1.19932 1.00623 0.90454 1.03749 1.24066 0.95748 0.99404 1.11707 1.20274 1.01468 0.89451 1.02401 1.83993 1.07131 0.99836 1.75346 1.24672 0.97046 0.96949 1.08461 1.20615 0.96269 0.94776 1.02945 0.91552 0.91484 0.91912 0.79330 0.95627 0.96869 0.89219 0.92518 0.84400 0.91097 0.91636 0.90827 0.91040 0.92667 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.16 36.00 0.33 -1.54 16 2 C 0.04 0.63 7.12 -79.69 -0.57 0.06 16 3 N -0.19 -3.97 8.12 35.12 0.29 -3.68 16 4 N -0.63 -13.80 5.95 -5.88 -0.03 -13.83 16 5 C 0.30 7.54 3.23 -69.08 -0.22 7.32 16 6 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 8 C -0.53 -14.22 8.74 -34.44 -0.30 -14.52 16 9 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 11 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 12 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 C -0.04 -0.57 5.79 -106.77 -0.62 -1.18 16 17 C -0.12 -1.54 9.31 -40.90 -0.38 -1.92 16 18 C -0.19 -2.31 6.48 -36.14 -0.23 -2.55 16 19 C -0.08 -0.65 10.36 36.00 0.37 -0.28 16 20 S 0.07 0.94 23.29 -107.50 -2.50 -1.56 16 21 C -0.15 -2.36 6.55 -35.49 -0.23 -2.59 16 22 C -0.09 -1.40 9.56 36.01 0.34 -1.05 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 25 H 0.06 0.94 6.35 -51.93 -0.33 0.62 16 26 H 0.37 7.63 6.36 -182.59 -1.16 6.47 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.14 1.54 6.89 -52.49 -0.36 1.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 2.06 5.70 -51.93 -0.30 1.77 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -28.10 317.94 -9.28 -37.37 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.16 Total: 5.04 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.26 Total: -19.89 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.88 Total: -41.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.10 -9.28 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.172 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds