Wall clock time and date at job start Mon Mar 30 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29712 * 120.00001 * 2 1 4 4 N 1.40105 * 119.99591 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72034 * 4 3 2 6 6 H 1.08998 * 109.47388 * 30.27291 * 5 4 3 7 7 C 1.53002 * 109.47327 * 270.27806 * 5 4 3 8 8 C 1.50704 * 109.47134 * 150.27854 * 5 4 3 9 9 H 1.08000 * 119.99799 * 359.97438 * 8 5 4 10 10 C 1.37875 * 119.99906 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00180 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99994 * 179.97438 * 10 8 5 13 13 H 1.48505 * 109.47329 * 59.99732 * 12 10 8 14 14 H 1.48498 * 109.47371 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47106 * 300.00077 * 12 10 8 16 16 C 1.47550 * 120.00197 * 180.02562 * 2 1 3 17 17 C 1.39603 * 122.82956 * 0.02562 * 16 2 1 18 18 C 1.32967 * 114.91568 * 179.97438 * 17 16 2 19 19 C 1.50697 * 124.98795 * 179.97438 * 18 17 16 20 20 S 1.75795 * 110.02284 * 0.02562 * 18 17 16 21 21 C 1.34903 * 122.82738 * 179.72950 * 16 2 1 22 22 C 1.50699 * 125.24140 * 0.02562 * 21 16 2 23 23 H 1.08997 * 109.47619 * 89.99506 * 1 2 3 24 24 H 1.09002 * 109.46744 * 209.99660 * 1 2 3 25 25 H 1.09003 * 109.47063 * 329.99184 * 1 2 3 26 26 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.46903 * 300.00205 * 7 5 4 28 28 H 1.08997 * 109.47461 * 59.99784 * 7 5 4 29 29 H 1.09000 * 109.47572 * 180.02562 * 7 5 4 30 30 H 0.96996 * 119.99825 * 180.02562 * 11 10 8 31 31 H 1.07998 * 122.54195 * 359.97438 * 17 16 2 32 32 H 1.08998 * 109.47059 * 90.00263 * 19 18 17 33 33 H 1.09004 * 109.47216 * 209.99849 * 19 18 17 34 34 H 1.08996 * 109.47663 * 330.00148 * 19 18 17 35 35 H 1.09003 * 109.47027 * 89.99704 * 22 21 16 36 36 H 1.08995 * 109.47289 * 209.99854 * 22 21 16 37 37 H 1.09002 * 109.46763 * 330.00487 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1555 1.1233 0.0000 4 7 1.4549 2.3366 0.0005 5 6 2.1874 3.6054 0.0067 6 1 3.1396 3.4777 -0.5080 7 6 2.4429 4.0397 1.4514 8 6 1.3726 4.6592 -0.6980 9 1 0.4061 4.4088 -1.1097 10 6 1.8616 5.9428 -0.8181 11 7 3.0388 6.2475 -0.3172 12 14 0.8520 7.2489 -1.6923 13 1 -0.4454 7.4233 -0.9911 14 1 1.5944 8.5350 -1.6859 15 1 0.6041 6.8268 -3.0943 16 6 2.2448 -1.2778 -0.0006 17 6 1.6073 -2.5198 -0.0017 18 6 2.4244 -3.5688 -0.0026 19 6 1.9814 -5.0092 -0.0033 20 16 4.0973 -3.0287 -0.0014 21 6 3.5921 -1.3443 -0.0060 22 6 4.5213 -0.1579 -0.0115 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 0.4849 2.3366 0.0013 27 1 1.4906 4.1674 1.9662 28 1 3.0322 3.2776 1.9612 29 1 2.9875 4.9839 1.4560 30 1 3.3826 7.1506 -0.4013 31 1 0.5321 -2.6209 -0.0017 32 1 1.8743 -5.3558 -1.0311 33 1 2.7255 -5.6184 0.5099 34 1 1.0241 -5.0952 0.5108 35 1 4.7495 0.1297 1.0149 36 1 5.4439 -0.4213 -0.5286 37 1 4.0425 0.6762 -0.5245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:08 Heat of formation + Delta-G solvation = 47.073930 kcal Electronic energy + Delta-G solvation = -17628.257633 eV Core-core repulsion = 14918.233671 eV Total energy + Delta-G solvation = -2710.023962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82916 -37.89150 -35.97736 -33.99282 -33.06467 -30.97019 -29.58305 -28.29483 -27.26610 -25.60762 -23.98091 -22.32607 -20.87964 -19.39898 -18.23391 -17.84957 -17.06746 -16.68396 -15.95389 -15.50332 -15.27359 -14.59557 -14.54126 -14.17217 -14.04331 -13.82246 -13.76576 -13.53412 -13.18620 -13.15020 -12.88478 -12.74703 -12.64476 -12.51002 -12.39547 -12.29007 -12.11547 -11.84471 -11.61124 -11.11153 -10.58153 -10.47834 -9.59878 -9.28888 -8.27003 -8.13348 -6.34294 -0.00731 0.69585 1.07474 1.11458 1.42606 1.44347 1.52226 2.22971 2.36535 2.50307 3.11508 3.87709 3.98580 4.14042 4.34614 4.47070 4.56553 4.59091 4.71181 4.76170 4.78128 4.83889 4.86103 4.97836 5.06613 5.13507 5.19357 5.22034 5.32948 5.43026 5.55925 5.56504 5.67123 5.83919 5.92197 6.22294 6.45307 6.86988 7.37524 7.84377 8.87479 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037343 B = 0.003992 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.631944 B = 7012.503051 C = 7431.134149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.059 3.941 3 N -0.238 5.238 4 N -0.642 5.642 5 C 0.310 3.690 6 H 0.001 0.999 7 C -0.135 4.135 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.969 3.031 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.273 1.273 16 C -0.056 4.056 17 C -0.130 4.130 18 C -0.180 4.180 19 C -0.079 4.079 20 S 0.105 5.895 21 C -0.177 4.177 22 C -0.084 4.084 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.372 0.628 27 H 0.028 0.972 28 H 0.016 0.984 29 H 0.068 0.932 30 H 0.267 0.733 31 H 0.162 0.838 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -20.176 0.947 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 N -0.049 5.049 4 N -0.380 5.380 5 C 0.206 3.794 6 H 0.019 0.981 7 C -0.195 4.195 8 C -0.588 4.588 9 H 0.078 0.922 10 C -0.180 4.180 11 N -0.552 5.552 12 Si 0.793 3.207 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.198 1.198 16 C -0.070 4.070 17 C -0.160 4.160 18 C -0.297 4.297 19 C -0.137 4.137 20 S 0.369 5.631 21 C -0.298 4.298 22 C -0.142 4.142 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.211 0.789 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.225 -20.153 0.971 20.178 hybrid contribution -2.586 1.728 -0.318 3.126 sum -2.811 -18.426 0.653 18.650 Atomic orbital electron populations 1.21027 0.91069 1.03627 1.03147 1.22631 0.94293 0.90181 1.06074 1.74163 1.27964 0.93234 1.09527 1.48584 1.05897 1.00203 1.83297 1.18061 0.91118 0.77970 0.92289 0.98149 1.22018 0.98906 1.00649 0.97885 1.21503 1.04763 0.95135 1.37366 0.92211 1.25691 0.96125 1.00262 0.95966 1.70009 1.18767 1.20899 1.45557 0.85453 0.78655 0.77673 0.78881 1.19268 1.20640 1.19824 1.17406 0.91501 0.91980 1.06109 1.20065 1.01977 0.89298 1.04685 1.24608 0.94844 1.01071 1.09134 1.20446 1.02649 0.86850 1.03791 1.83882 1.07876 0.96989 1.74321 1.24824 0.97336 0.98712 1.08931 1.20473 0.96968 0.94462 1.02345 0.90429 0.88352 0.92598 0.78889 0.95324 0.96484 0.91310 0.92419 0.82049 0.89631 0.90473 0.88989 0.91681 0.91076 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.16 71.23 0.65 -2.90 16 2 C 0.06 2.05 7.12 45.33 0.32 2.37 16 3 N -0.24 -10.03 8.12 -42.80 -0.35 -10.38 16 4 N -0.64 -29.41 5.95 -172.52 -1.03 -30.43 16 5 C 0.31 16.43 3.23 44.25 0.14 16.58 16 6 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 7 C -0.14 -6.93 9.29 71.98 0.67 -6.26 16 8 C -0.55 -30.20 8.74 25.60 0.22 -29.98 16 9 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 10 C 0.02 1.09 5.30 84.65 0.45 1.53 16 11 N -0.91 -52.17 11.32 21.45 0.24 -51.92 16 12 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 C -0.06 -1.73 5.79 -21.26 -0.12 -1.86 16 17 C -0.13 -3.06 9.31 21.43 0.20 -2.86 16 18 C -0.18 -3.69 6.48 24.51 0.16 -3.53 16 19 C -0.08 -0.98 10.36 71.23 0.74 -0.24 16 20 S 0.11 2.47 23.29 -56.49 -1.32 1.16 16 21 C -0.18 -5.46 6.55 24.92 0.16 -5.30 16 22 C -0.08 -2.78 9.56 71.24 0.68 -2.09 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.10 2.06 6.77 -2.39 -0.02 2.05 16 25 H 0.06 1.64 6.35 -2.39 -0.02 1.62 16 26 H 0.37 15.83 6.36 -213.32 -1.36 14.48 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.16 2.94 6.89 -2.91 -0.02 2.92 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.08 3.20 5.70 -2.39 -0.01 3.19 16 Total: -1.00 -62.46 317.94 3.57 -58.88 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.28 Total: 22.37 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.28 Total: -34.52 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -1.13 Total: -92.74 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.32 Total: 1.16 kcal Total: -62.46 3.57 -58.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.958 kcal (2) G-P(sol) polarization free energy of solvation -62.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds