Wall clock time and date at job start Mon Mar 30 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29717 * 119.99954 * 2 1 4 4 N 1.40097 * 119.99796 * 359.97438 * 3 2 1 5 5 C 1.46502 * 120.00085 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46787 * 329.99902 * 5 4 3 7 7 C 1.52998 * 109.47324 * 89.99814 * 5 4 3 8 8 C 1.50697 * 109.47215 * 209.99757 * 5 4 3 9 9 H 1.08001 * 120.00233 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00260 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99548 * 359.97438 * 10 8 5 12 12 Si 1.86793 * 120.00351 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47399 * 59.99927 * 12 10 8 14 14 H 1.48500 * 109.47448 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47237 * 300.00144 * 12 10 8 16 16 C 1.47554 * 120.00456 * 179.97438 * 2 1 3 17 17 C 1.39606 * 122.82411 * 0.02758 * 16 2 1 18 18 C 1.32966 * 114.91266 * 179.97438 * 17 16 2 19 19 C 1.50702 * 124.99194 * 180.02562 * 18 17 16 20 20 S 1.75799 * 110.02414 * 359.97438 * 18 17 16 21 21 C 1.34898 * 122.83004 * 180.02562 * 16 2 1 22 22 C 1.50697 * 125.24073 * 0.05439 * 21 16 2 23 23 H 1.08992 * 109.47332 * 269.99918 * 1 2 3 24 24 H 1.08998 * 109.46970 * 30.00636 * 1 2 3 25 25 H 1.09002 * 109.46959 * 150.00222 * 1 2 3 26 26 H 0.96997 * 120.00217 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47063 * 59.99781 * 7 5 4 28 28 H 1.08998 * 109.47759 * 180.02562 * 7 5 4 29 29 H 1.09001 * 109.46889 * 300.00331 * 7 5 4 30 30 H 0.97001 * 119.99980 * 180.02562 * 11 10 8 31 31 H 1.07999 * 122.54417 * 359.95446 * 17 16 2 32 32 H 1.08996 * 109.47557 * 180.02562 * 19 18 17 33 33 H 1.09004 * 109.46395 * 300.02148 * 19 18 17 34 34 H 1.09001 * 109.47223 * 60.01679 * 19 18 17 35 35 H 1.09000 * 109.47001 * 179.97438 * 22 21 16 36 36 H 1.09007 * 109.47087 * 299.98356 * 22 21 16 37 37 H 1.08997 * 109.46988 * 59.98403 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1555 1.1234 0.0000 4 7 1.4550 2.3366 -0.0005 5 6 2.1874 3.6054 -0.0011 6 1 3.1398 3.4753 0.5128 7 6 2.4425 4.0465 -1.4438 8 6 1.3729 4.6560 0.7088 9 1 0.4062 4.4039 1.1189 10 6 1.8619 5.9390 0.8346 11 7 3.0394 6.2458 0.3356 12 14 0.8526 7.2410 1.7152 13 1 0.6051 6.8125 3.1153 14 1 1.5955 8.5268 1.7156 15 1 -0.4450 7.4187 1.0152 16 6 2.2448 -1.2778 0.0006 17 6 1.6073 -2.5198 0.0006 18 6 2.4244 -3.5688 0.0006 19 6 1.9815 -5.0092 0.0000 20 16 4.0974 -3.0287 -0.0001 21 6 3.5922 -1.3443 0.0011 22 6 4.5213 -0.1579 0.0024 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 0.4850 2.3366 -0.0013 27 1 1.4901 4.1765 -1.9577 28 1 2.9878 4.9902 -1.4443 29 1 3.0316 3.2866 -1.9572 30 1 3.3836 7.1483 0.4244 31 1 0.5321 -2.6209 0.0009 32 1 2.8569 -5.6586 0.0006 33 1 1.3829 -5.2055 0.8896 34 1 1.3841 -5.2054 -0.8904 35 1 5.5544 -0.5054 0.0030 36 1 4.3414 0.4455 -0.8875 37 1 4.3402 0.4445 0.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:12 Heat of formation + Delta-G solvation = 59.219131 kcal Electronic energy + Delta-G solvation = -17624.832036 eV Core-core repulsion = 14915.334729 eV Total energy + Delta-G solvation = -2709.497307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.58838 -36.38763 -34.23827 -32.73823 -31.37565 -29.65601 -28.31789 -26.76904 -25.23292 -24.45202 -22.74305 -20.60161 -19.48566 -17.96101 -16.73445 -16.52251 -15.42015 -14.99518 -14.57511 -14.32699 -13.73478 -13.53755 -13.11333 -12.88782 -12.81869 -12.63802 -12.40237 -12.08174 -11.91533 -11.61266 -11.41183 -11.33144 -11.23748 -11.02479 -10.81071 -10.57276 -10.41137 -10.22640 -10.12834 -9.31085 -8.99130 -8.55064 -8.34321 -8.23337 -6.65797 -6.13687 -4.21986 1.13603 1.76406 2.13652 2.33611 3.25167 3.30005 3.31559 3.63392 3.87661 4.36934 4.88413 5.14910 5.18612 5.22666 5.29454 5.42541 5.54830 5.60220 5.79074 5.81899 5.90847 5.92340 6.15796 6.18245 6.34178 6.57165 6.63208 6.74209 6.79769 7.00315 7.10109 7.17153 7.58234 7.78868 7.87102 8.17027 8.32773 8.86095 9.38608 9.45047 10.92001 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037275 B = 0.003993 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.988771 B = 7010.440378 C = 7428.166925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.033 3.967 3 N -0.193 5.193 4 N -0.625 5.625 5 C 0.298 3.702 6 H 0.041 0.959 7 C -0.150 4.150 8 C -0.531 4.531 9 H 0.058 0.942 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.035 4.035 17 C -0.117 4.117 18 C -0.193 4.193 19 C -0.077 4.077 20 S 0.076 5.924 21 C -0.153 4.153 22 C -0.067 4.067 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.369 0.631 27 H 0.025 0.975 28 H 0.089 0.911 29 H 0.012 0.988 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -17.775 -1.304 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 N -0.007 5.007 4 N -0.363 5.363 5 C 0.196 3.804 6 H 0.059 0.941 7 C -0.209 4.209 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.047 4.047 17 C -0.148 4.148 18 C -0.310 4.310 19 C -0.135 4.135 20 S 0.340 5.660 21 C -0.274 4.274 22 C -0.125 4.125 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.206 0.794 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.314 -17.733 -1.322 17.831 hybrid contribution -3.135 1.293 0.424 3.417 sum -1.820 -16.439 -0.898 16.564 Atomic orbital electron populations 1.20932 0.93391 1.02399 1.02054 1.21857 0.92267 0.90266 1.11261 1.74163 1.27885 0.93021 1.05593 1.49070 1.06185 1.00365 1.80632 1.18493 0.92695 0.76392 0.92813 0.94116 1.22204 0.99152 1.01735 0.97836 1.21204 1.04521 0.94448 1.36832 0.92337 1.24849 0.95120 0.98203 0.95401 1.69880 1.17355 1.20417 1.44729 0.86499 0.79998 0.80455 0.80101 1.20185 1.21082 1.20186 1.17096 0.91163 0.91617 1.04853 1.19905 1.00649 0.90452 1.03817 1.24069 0.95730 0.99392 1.11760 1.20266 1.01282 0.89363 1.02628 1.83997 1.07152 0.99652 1.75245 1.24661 0.97087 0.96985 1.08709 1.20296 0.94696 0.93019 1.04533 0.91608 0.91959 0.91519 0.79369 0.95629 0.89228 0.96910 0.92525 0.84417 0.91774 0.90900 0.90913 0.92965 0.89853 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.16 36.00 0.33 -1.54 16 2 C 0.03 0.58 7.12 -79.69 -0.57 0.01 16 3 N -0.19 -3.94 8.62 35.12 0.30 -3.63 16 4 N -0.63 -13.84 5.95 -5.88 -0.04 -13.87 16 5 C 0.30 7.57 3.23 -69.08 -0.22 7.35 16 6 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.15 -3.69 9.29 37.16 0.35 -3.34 16 8 C -0.53 -14.25 8.74 -34.44 -0.30 -14.55 16 9 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 11 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 12 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 C -0.03 -0.55 5.79 -106.77 -0.62 -1.17 16 17 C -0.12 -1.55 9.31 -40.90 -0.38 -1.93 16 18 C -0.19 -2.31 6.48 -36.13 -0.23 -2.54 16 19 C -0.08 -0.65 10.36 36.01 0.37 -0.27 16 20 S 0.08 0.97 23.29 -107.50 -2.50 -1.54 16 21 C -0.15 -2.39 6.55 -35.50 -0.23 -2.63 16 22 C -0.07 -1.06 8.72 36.00 0.31 -0.74 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.94 6.35 -51.93 -0.33 0.61 16 25 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 26 H 0.37 7.66 6.36 -182.60 -1.16 6.50 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.14 1.55 6.88 -52.49 -0.36 1.19 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.44 7.65 -51.93 -0.40 1.04 16 37 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -28.18 319.06 -9.35 -37.53 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.24 Total: 4.62 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.29 Total: -19.66 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.90 Total: -41.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.18 -9.35 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.745 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds