Wall clock time and date at job start Mon Mar 30 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29717 * 119.99954 * 2 1 4 4 N 1.40097 * 119.99796 * 359.97438 * 3 2 1 5 5 C 1.46502 * 120.00085 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46787 * 329.99902 * 5 4 3 7 7 C 1.52998 * 109.47324 * 89.99814 * 5 4 3 8 8 C 1.50697 * 109.47215 * 209.99757 * 5 4 3 9 9 H 1.08001 * 120.00233 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00260 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99548 * 359.97438 * 10 8 5 12 12 Si 1.86793 * 120.00351 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47399 * 59.99927 * 12 10 8 14 14 H 1.48500 * 109.47448 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47237 * 300.00144 * 12 10 8 16 16 C 1.47554 * 120.00456 * 179.97438 * 2 1 3 17 17 C 1.39606 * 122.82411 * 0.02758 * 16 2 1 18 18 C 1.32966 * 114.91266 * 179.97438 * 17 16 2 19 19 C 1.50702 * 124.99194 * 180.02562 * 18 17 16 20 20 S 1.75799 * 110.02414 * 359.97438 * 18 17 16 21 21 C 1.34898 * 122.83004 * 180.02562 * 16 2 1 22 22 C 1.50697 * 125.24073 * 0.05439 * 21 16 2 23 23 H 1.08992 * 109.47332 * 269.99918 * 1 2 3 24 24 H 1.08998 * 109.46970 * 30.00636 * 1 2 3 25 25 H 1.09002 * 109.46959 * 150.00222 * 1 2 3 26 26 H 0.96997 * 120.00217 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47063 * 59.99781 * 7 5 4 28 28 H 1.08998 * 109.47759 * 180.02562 * 7 5 4 29 29 H 1.09001 * 109.46889 * 300.00331 * 7 5 4 30 30 H 0.97001 * 119.99980 * 180.02562 * 11 10 8 31 31 H 1.07999 * 122.54417 * 359.95446 * 17 16 2 32 32 H 1.08996 * 109.47557 * 180.02562 * 19 18 17 33 33 H 1.09004 * 109.46395 * 300.02148 * 19 18 17 34 34 H 1.09001 * 109.47223 * 60.01679 * 19 18 17 35 35 H 1.09000 * 109.47001 * 179.97438 * 22 21 16 36 36 H 1.09007 * 109.47087 * 299.98356 * 22 21 16 37 37 H 1.08997 * 109.46988 * 59.98403 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1555 1.1234 0.0000 4 7 1.4550 2.3366 -0.0005 5 6 2.1874 3.6054 -0.0011 6 1 3.1398 3.4753 0.5128 7 6 2.4425 4.0465 -1.4438 8 6 1.3729 4.6560 0.7088 9 1 0.4062 4.4039 1.1189 10 6 1.8619 5.9390 0.8346 11 7 3.0394 6.2458 0.3356 12 14 0.8526 7.2410 1.7152 13 1 0.6051 6.8125 3.1153 14 1 1.5955 8.5268 1.7156 15 1 -0.4450 7.4187 1.0152 16 6 2.2448 -1.2778 0.0006 17 6 1.6073 -2.5198 0.0006 18 6 2.4244 -3.5688 0.0006 19 6 1.9815 -5.0092 0.0000 20 16 4.0974 -3.0287 -0.0001 21 6 3.5922 -1.3443 0.0011 22 6 4.5213 -0.1579 0.0024 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 0.4850 2.3366 -0.0013 27 1 1.4901 4.1765 -1.9577 28 1 2.9878 4.9902 -1.4443 29 1 3.0316 3.2866 -1.9572 30 1 3.3836 7.1483 0.4244 31 1 0.5321 -2.6209 0.0009 32 1 2.8569 -5.6586 0.0006 33 1 1.3829 -5.2055 0.8896 34 1 1.3841 -5.2054 -0.8904 35 1 5.5544 -0.5054 0.0030 36 1 4.3414 0.4455 -0.8875 37 1 4.3402 0.4445 0.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:11 Heat of formation + Delta-G solvation = 44.391609 kcal Electronic energy + Delta-G solvation = -17625.475006 eV Core-core repulsion = 14915.334729 eV Total energy + Delta-G solvation = -2710.140276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80483 -37.89003 -35.97182 -33.99822 -33.07507 -30.95297 -29.59684 -28.30221 -27.26937 -25.60205 -23.97504 -22.32461 -20.88289 -19.38320 -18.22717 -17.83395 -17.07434 -16.67276 -15.93326 -15.50785 -15.27995 -14.57570 -14.54328 -14.17409 -14.03142 -13.88660 -13.78296 -13.55723 -13.18586 -13.16064 -12.88822 -12.76045 -12.61082 -12.49655 -12.35959 -12.27430 -12.11115 -11.85431 -11.61002 -11.11566 -10.63425 -10.55673 -9.59872 -9.28572 -8.27250 -8.13537 -6.34556 0.00198 0.70144 1.06463 1.12045 1.42340 1.44133 1.52012 2.23418 2.36444 2.50213 3.11233 3.88039 3.98098 4.12581 4.35108 4.47211 4.55056 4.58086 4.71024 4.76206 4.78946 4.85889 4.86298 4.97047 5.06317 5.13172 5.18177 5.22035 5.31252 5.41609 5.48320 5.56397 5.66903 5.83096 5.92174 6.22115 6.44520 6.86513 7.37213 7.85056 8.87253 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037275 B = 0.003993 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.988771 B = 7010.440378 C = 7428.166925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 N -0.237 5.237 4 N -0.641 5.641 5 C 0.310 3.690 6 H 0.000 1.000 7 C -0.135 4.135 8 C -0.549 4.549 9 H 0.059 0.941 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.969 3.031 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.055 4.055 17 C -0.131 4.131 18 C -0.179 4.179 19 C -0.078 4.078 20 S 0.110 5.890 21 C -0.180 4.180 22 C -0.060 4.060 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.372 0.628 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -20.293 -1.066 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 N -0.049 5.049 4 N -0.379 5.379 5 C 0.206 3.794 6 H 0.018 0.982 7 C -0.194 4.194 8 C -0.588 4.588 9 H 0.078 0.922 10 C -0.180 4.180 11 N -0.552 5.552 12 Si 0.794 3.206 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.192 1.192 16 C -0.069 4.069 17 C -0.161 4.161 18 C -0.296 4.296 19 C -0.137 4.137 20 S 0.374 5.626 21 C -0.301 4.301 22 C -0.119 4.119 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.211 0.789 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.179 0.821 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.104 -20.271 -1.088 20.301 hybrid contribution -2.634 1.767 0.347 3.191 sum -2.738 -18.504 -0.741 18.720 Atomic orbital electron populations 1.21021 0.91150 1.03583 1.03094 1.22623 0.94252 0.90217 1.06335 1.74237 1.28297 0.93154 1.09175 1.48557 1.05875 1.00209 1.83305 1.18053 0.91110 0.77947 0.92292 0.98190 1.22013 0.98900 1.00652 0.97860 1.21503 1.04752 0.95268 1.37267 0.92236 1.25694 0.96133 1.00230 0.95991 1.70012 1.18738 1.20902 1.45577 0.85451 0.78659 0.77667 0.78871 1.19845 1.20617 1.19247 1.17385 0.91536 0.91947 1.06041 1.20028 1.01985 0.89301 1.04818 1.24615 0.94865 1.01053 1.09109 1.20437 1.02258 0.86745 1.04216 1.83878 1.07828 0.96746 1.74133 1.24815 0.97356 0.98781 1.09193 1.20130 0.96254 0.93098 1.02385 0.90502 0.92648 0.88377 0.78916 0.95310 0.91310 0.96504 0.92415 0.82113 0.90664 0.89262 0.89198 0.90910 0.91974 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.16 71.23 0.65 -2.92 16 2 C 0.06 1.97 7.12 45.33 0.32 2.29 16 3 N -0.24 -10.06 8.62 -42.79 -0.37 -10.43 16 4 N -0.64 -29.53 5.95 -172.52 -1.03 -30.56 16 5 C 0.31 16.51 3.23 44.24 0.14 16.65 16 6 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 7 C -0.13 -6.92 9.29 71.98 0.67 -6.25 16 8 C -0.55 -30.30 8.74 25.60 0.22 -30.08 16 9 H 0.06 3.19 7.79 -2.91 -0.02 3.16 16 10 C 0.02 1.09 5.30 84.65 0.45 1.53 16 11 N -0.91 -52.25 11.32 21.45 0.24 -52.01 16 12 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 C -0.06 -1.71 5.79 -21.26 -0.12 -1.83 16 17 C -0.13 -3.08 9.31 21.43 0.20 -2.88 16 18 C -0.18 -3.66 6.48 24.52 0.16 -3.50 16 19 C -0.08 -0.96 10.36 71.24 0.74 -0.22 16 20 S 0.11 2.56 23.29 -56.49 -1.32 1.24 16 21 C -0.18 -5.54 6.55 24.92 0.16 -5.38 16 22 C -0.06 -1.98 8.72 71.23 0.62 -1.36 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 1.63 6.35 -2.39 -0.02 1.62 16 25 H 0.10 2.08 6.77 -2.39 -0.02 2.06 16 26 H 0.37 15.91 6.36 -213.33 -1.36 14.56 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.16 2.95 6.88 -2.91 -0.02 2.93 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.29 7.65 -2.38 -0.02 2.27 16 37 H 0.06 2.24 7.66 -2.39 -0.02 2.22 16 Total: -1.00 -62.73 319.06 3.49 -59.24 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.29 Total: 21.53 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 4.22 Total: -33.95 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -1.15 Total: -92.99 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.32 Total: 1.24 kcal Total: -62.73 3.49 -59.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.635 kcal (2) G-P(sol) polarization free energy of solvation -62.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds