Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29761 * 119.99659 * 2 1 4 4 N 1.40095 * 120.00302 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00390 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46342 * 329.99546 * 5 4 3 7 7 C 1.52998 * 109.47185 * 89.99481 * 5 4 3 8 8 C 1.50701 * 109.47260 * 209.99968 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 5 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 5 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.47435 * 120.00136 * 180.02562 * 2 1 3 17 17 C 1.39640 * 120.16704 * 359.72394 * 16 2 1 18 18 C 1.38126 * 119.86905 * 179.77131 * 17 16 2 19 19 F 1.35103 * 119.89312 * 180.23284 * 18 17 16 20 20 C 1.38610 * 120.21792 * 0.48406 * 18 17 16 21 21 C 1.38248 * 120.34504 * 359.76770 * 20 18 17 22 22 C 1.38468 * 120.12523 * 0.02562 * 21 20 18 23 23 O 1.35887 * 120.10981 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47110 * 89.99847 * 1 2 3 25 25 H 1.09001 * 109.47281 * 209.99408 * 1 2 3 26 26 H 1.08999 * 109.47221 * 329.99835 * 1 2 3 27 27 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 28 28 H 1.09005 * 109.46870 * 300.00240 * 7 5 4 29 29 H 1.08998 * 109.47156 * 60.00179 * 7 5 4 30 30 H 1.09004 * 109.46783 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.06674 * 0.02562 * 17 16 2 33 33 H 1.07997 * 119.82837 * 179.74824 * 20 18 17 34 34 H 1.08008 * 119.93760 * 179.97438 * 21 20 18 35 35 H 0.96692 * 114.00035 * 270.01693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4752 0.5150 7 6 2.4428 4.0481 -1.4412 8 6 1.3732 4.6558 0.7120 9 1 0.4064 4.4032 1.1219 10 6 1.8595 5.9401 0.8335 11 7 1.1462 6.8578 1.4491 12 14 3.5313 6.3770 0.1240 13 1 3.3690 6.8369 -1.2787 14 1 4.1444 7.4612 0.9326 15 1 4.4098 5.1800 0.1538 16 6 2.2442 -1.2768 -0.0006 17 6 1.5496 -2.4882 0.0047 18 6 2.2464 -3.6807 -0.0006 19 9 1.5748 -4.8530 -0.0003 20 6 3.6325 -3.6788 -0.0011 21 6 4.3293 -2.4848 -0.0011 22 6 3.6451 -1.2809 0.0000 23 8 4.3303 -0.1074 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0005 28 1 3.0319 3.2886 -1.9553 29 1 1.4904 4.1786 -1.9550 30 1 2.9881 4.9919 -1.4407 31 1 1.4885 7.7613 1.5349 32 1 0.4696 -2.4926 0.0088 33 1 4.1710 -4.6149 -0.0012 34 1 5.4094 -2.4909 -0.0010 35 1 4.5292 0.2315 0.8840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771885029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = -10.913829 kcal Electronic energy + Delta-G solvation = -19598.353624 eV Core-core repulsion = 16319.601947 eV Total energy + Delta-G solvation = -3278.751676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.93849 -39.71524 -37.04865 -36.26949 -34.60326 -32.28206 -31.01684 -29.36006 -28.62125 -27.17720 -25.14617 -23.48879 -22.38288 -20.63687 -19.43316 -18.27743 -17.69184 -16.67436 -16.53936 -15.73961 -15.56495 -15.28357 -14.98213 -14.32681 -14.12910 -13.83283 -13.57063 -13.23787 -13.09864 -12.82970 -12.25590 -12.16388 -11.90305 -11.76152 -11.69189 -11.49174 -10.83530 -10.69905 -10.56804 -10.21462 -9.68102 -9.48136 -9.26896 -9.14675 -8.73509 -8.52492 -6.98567 -6.24120 -4.26914 0.84520 1.07164 2.72301 3.20083 3.31051 3.33093 3.52444 3.63332 4.22748 4.27016 4.33200 4.66005 4.71608 4.92951 5.10183 5.27373 5.40997 5.51475 5.71024 5.76868 5.84771 5.93458 6.02305 6.15060 6.27743 6.35474 6.47815 6.55526 6.66009 6.74243 6.94540 7.29820 7.47556 7.87799 7.91189 8.35596 8.75459 9.08956 9.35988 10.88292 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035896 B = 0.004294 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.839765 B = 6519.482294 C = 7048.970974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 N -0.165 5.165 4 N -0.612 5.612 5 C 0.271 3.729 6 H 0.043 0.957 7 C -0.165 4.165 8 C -0.535 4.535 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.893 5.893 12 Si 0.890 3.110 13 H -0.276 1.276 14 H -0.294 1.294 15 H -0.263 1.263 16 C 0.004 3.996 17 C -0.138 4.138 18 C 0.088 3.912 19 F -0.143 7.143 20 C -0.149 4.149 21 C -0.118 4.118 22 C 0.115 3.885 23 O -0.472 6.472 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.376 0.624 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.268 0.732 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -18.371 -2.417 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 N 0.021 4.979 4 N -0.349 5.349 5 C 0.167 3.833 6 H 0.061 0.939 7 C -0.223 4.223 8 C -0.574 4.574 9 H 0.096 0.904 10 C -0.125 4.125 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.188 1.188 16 C 0.001 3.999 17 C -0.159 4.159 18 C 0.069 3.931 19 F -0.121 7.121 20 C -0.169 4.169 21 C -0.137 4.137 22 C 0.067 3.933 23 O -0.281 6.281 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.215 0.785 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.544 -17.607 -2.954 18.423 hybrid contribution -0.537 0.093 0.076 0.551 sum 4.007 -17.514 -2.878 18.196 Atomic orbital electron populations 1.20998 0.92894 1.03026 1.02400 1.22090 0.92801 0.90497 1.12764 1.74285 1.27374 0.92759 1.03523 1.48785 1.06506 1.00069 1.79517 1.18887 0.93545 0.78813 0.92053 0.93913 1.22577 1.00485 0.99237 1.00024 1.21054 1.05989 0.93356 1.36991 0.90432 1.24822 0.97373 0.95821 0.94510 1.69869 1.37837 1.03231 1.42019 0.86824 0.84487 0.78329 0.78430 1.20329 1.22186 1.18771 1.18466 0.91876 0.90871 0.98722 1.21044 1.00904 0.89838 1.04133 1.17448 0.90103 0.80982 1.04599 1.91485 1.80614 1.45868 1.94175 1.20961 0.92126 0.99252 1.04551 1.21212 1.00677 0.90874 1.00905 1.18573 0.88926 0.86112 0.99721 1.84855 1.74758 1.35363 1.33171 0.91368 0.91133 0.91417 0.78488 0.94542 0.93007 0.93534 0.92231 0.84124 0.84753 0.84515 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.04 36.01 0.33 -1.46 16 2 C 0.00 0.07 7.10 -79.72 -0.57 -0.49 16 3 N -0.16 -3.08 9.34 35.10 0.33 -2.75 16 4 N -0.61 -12.58 5.95 -5.88 -0.03 -12.62 16 5 C 0.27 6.33 2.82 -69.08 -0.20 6.13 16 6 H 0.04 1.04 7.21 -51.93 -0.37 0.67 16 7 C -0.16 -3.62 9.00 37.16 0.33 -3.28 16 8 C -0.54 -14.39 9.32 -34.44 -0.32 -14.72 16 9 H 0.08 2.24 8.03 -52.49 -0.42 1.82 16 10 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 11 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 12 Si 0.89 21.16 24.37 -169.99 -4.14 17.02 16 13 H -0.28 -6.42 6.86 56.52 0.39 -6.04 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 16 C 0.00 0.05 5.88 -104.93 -0.62 -0.57 16 17 C -0.14 -1.65 9.34 -39.10 -0.37 -2.02 16 18 C 0.09 1.01 7.29 -39.49 -0.29 0.72 16 19 F -0.14 -1.67 17.26 2.25 0.04 -1.63 16 20 C -0.15 -1.53 10.01 -39.44 -0.39 -1.92 16 21 C -0.12 -1.28 9.97 -39.49 -0.39 -1.68 16 22 C 0.11 1.54 6.71 -38.80 -0.26 1.28 16 23 O -0.47 -6.84 11.38 -19.39 -0.22 -7.06 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.77 6.47 -51.93 -0.34 0.43 16 26 H 0.07 0.96 6.35 -51.93 -0.33 0.63 16 27 H 0.38 7.36 6.36 -182.60 -1.16 6.20 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.04 3.25 -51.93 -0.17 0.87 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.14 1.46 6.35 -52.48 -0.33 1.12 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.39 4.53 9.06 45.56 0.41 4.95 16 LS Contribution 296.62 15.07 4.47 4.47 Total: -1.00 -30.04 296.62 -5.63 -35.67 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.01 Total: 8.28 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.84 Total: -15.92 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.07 Total: -40.82 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.22 Total: -7.06 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.04 -5.63 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.757 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds