Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29761 * 119.99659 * 2 1 4 4 N 1.40095 * 120.00302 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00390 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46342 * 329.99546 * 5 4 3 7 7 C 1.52998 * 109.47185 * 89.99481 * 5 4 3 8 8 C 1.50701 * 109.47260 * 209.99968 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 5 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 5 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.47435 * 120.00136 * 180.02562 * 2 1 3 17 17 C 1.39640 * 120.16704 * 359.72394 * 16 2 1 18 18 C 1.38126 * 119.86905 * 179.77131 * 17 16 2 19 19 F 1.35103 * 119.89312 * 180.23284 * 18 17 16 20 20 C 1.38610 * 120.21792 * 0.48406 * 18 17 16 21 21 C 1.38248 * 120.34504 * 359.76770 * 20 18 17 22 22 C 1.38468 * 120.12523 * 0.02562 * 21 20 18 23 23 O 1.35887 * 120.10981 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47110 * 89.99847 * 1 2 3 25 25 H 1.09001 * 109.47281 * 209.99408 * 1 2 3 26 26 H 1.08999 * 109.47221 * 329.99835 * 1 2 3 27 27 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 28 28 H 1.09005 * 109.46870 * 300.00240 * 7 5 4 29 29 H 1.08998 * 109.47156 * 60.00179 * 7 5 4 30 30 H 1.09004 * 109.46783 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.06674 * 0.02562 * 17 16 2 33 33 H 1.07997 * 119.82837 * 179.74824 * 20 18 17 34 34 H 1.08008 * 119.93760 * 179.97438 * 21 20 18 35 35 H 0.96692 * 114.00035 * 270.01693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1238 0.0000 4 7 1.4553 2.3371 0.0005 5 6 2.1877 3.6058 0.0011 6 1 3.1401 3.4752 0.5150 7 6 2.4428 4.0481 -1.4412 8 6 1.3732 4.6558 0.7120 9 1 0.4064 4.4032 1.1219 10 6 1.8595 5.9401 0.8335 11 7 1.1462 6.8578 1.4491 12 14 3.5313 6.3770 0.1240 13 1 3.3690 6.8369 -1.2787 14 1 4.1444 7.4612 0.9326 15 1 4.4098 5.1800 0.1538 16 6 2.2442 -1.2768 -0.0006 17 6 1.5496 -2.4882 0.0047 18 6 2.2464 -3.6807 -0.0006 19 9 1.5748 -4.8530 -0.0003 20 6 3.6325 -3.6788 -0.0011 21 6 4.3293 -2.4848 -0.0011 22 6 3.6451 -1.2809 0.0000 23 8 4.3303 -0.1074 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0005 28 1 3.0319 3.2886 -1.9553 29 1 1.4904 4.1786 -1.9550 30 1 2.9881 4.9919 -1.4407 31 1 1.4885 7.7613 1.5349 32 1 0.4696 -2.4926 0.0088 33 1 4.1710 -4.6149 -0.0012 34 1 5.4094 -2.4909 -0.0010 35 1 4.5292 0.2315 0.8840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771885029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = -32.028568 kcal Electronic energy + Delta-G solvation = -19599.269228 eV Core-core repulsion = 16319.601947 eV Total energy + Delta-G solvation = -3279.667280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83526 -40.72183 -38.43339 -37.28747 -36.24970 -34.04108 -32.38286 -30.44746 -29.73806 -28.53183 -27.13458 -24.58720 -23.33515 -22.31751 -20.72340 -19.42088 -18.98153 -18.15419 -17.64971 -17.21917 -16.67156 -16.45933 -16.11801 -15.79768 -15.21963 -15.02499 -14.84745 -14.73796 -14.43779 -14.10859 -13.85710 -13.69710 -13.29287 -12.95823 -12.80666 -12.69740 -12.57353 -12.24558 -11.98413 -11.62041 -11.50549 -11.26365 -10.83202 -10.64779 -10.21947 -9.51092 -8.41877 -8.35663 -6.43611 -0.15325 0.15597 1.31918 1.37827 1.48391 1.58655 2.11842 2.28396 2.63607 2.99614 3.27293 3.38952 3.60819 3.80216 4.07492 4.28278 4.34699 4.43575 4.50515 4.61157 4.65845 4.73739 4.78774 4.93848 5.00627 5.03889 5.11350 5.17119 5.33609 5.44958 5.51701 5.71635 5.82242 6.08631 6.47842 6.63776 6.92221 7.23294 7.70058 8.79398 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035896 B = 0.004294 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.839765 B = 6519.482294 C = 7048.970974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.034 3.966 3 N -0.204 5.204 4 N -0.634 5.634 5 C 0.282 3.718 6 H 0.031 0.969 7 C -0.157 4.157 8 C -0.536 4.536 9 H 0.041 0.959 10 C 0.025 3.975 11 N -0.940 5.940 12 Si 0.950 3.050 13 H -0.264 1.264 14 H -0.294 1.294 15 H -0.249 1.249 16 C -0.030 4.030 17 C -0.127 4.127 18 C 0.079 3.921 19 F -0.143 7.143 20 C -0.129 4.129 21 C -0.115 4.115 22 C 0.105 3.895 23 O -0.490 6.490 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.375 0.625 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.270 0.730 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -21.120 -3.342 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 N -0.016 5.016 4 N -0.371 5.371 5 C 0.176 3.824 6 H 0.049 0.951 7 C -0.215 4.215 8 C -0.575 4.575 9 H 0.059 0.941 10 C -0.174 4.174 11 N -0.579 5.579 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.221 1.221 15 H -0.173 1.173 16 C -0.033 4.033 17 C -0.149 4.149 18 C 0.060 3.940 19 F -0.121 7.121 20 C -0.149 4.149 21 C -0.133 4.133 22 C 0.057 3.943 23 O -0.301 6.301 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.214 0.786 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.998 -20.384 -3.882 21.600 hybrid contribution -1.053 0.592 0.417 1.277 sum 4.945 -19.793 -3.465 20.693 Atomic orbital electron populations 1.21093 0.91341 1.03756 1.03417 1.22764 0.94317 0.90616 1.07780 1.74320 1.27339 0.92601 1.07295 1.48355 1.06057 1.00165 1.82554 1.18480 0.92350 0.79347 0.92182 0.95072 1.22461 1.00633 0.99313 0.99133 1.21306 1.04952 0.94635 1.36636 0.94067 1.25654 1.01180 0.95702 0.94869 1.70004 1.40020 1.03833 1.44035 0.85847 0.80011 0.78410 0.78135 1.18963 1.22100 1.17281 1.18524 0.92368 0.90516 1.01919 1.21167 1.01736 0.89336 1.02611 1.17563 0.90703 0.80779 1.04989 1.91495 1.80711 1.45713 1.94203 1.21332 0.91739 1.00274 1.01572 1.21426 1.01909 0.89917 1.00043 1.18887 0.88991 0.86678 0.99703 1.84814 1.74921 1.36196 1.34180 0.90113 0.88350 0.92675 0.78635 0.93161 0.93062 0.93891 0.92061 0.82642 0.81727 0.82120 0.74268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.04 71.24 0.64 -2.83 16 2 C 0.03 1.04 7.10 45.29 0.32 1.36 16 3 N -0.20 -7.62 9.34 -42.85 -0.40 -8.02 16 4 N -0.63 -26.65 5.95 -172.52 -1.03 -27.68 16 5 C 0.28 13.34 2.82 44.24 0.12 13.46 16 6 H 0.03 1.54 7.21 -2.38 -0.02 1.52 16 7 C -0.16 -6.79 9.00 71.98 0.65 -6.15 16 8 C -0.54 -29.89 9.32 25.60 0.24 -29.65 16 9 H 0.04 2.52 8.03 -2.91 -0.02 2.50 16 10 C 0.03 1.42 5.45 84.65 0.46 1.88 16 11 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 12 Si 0.95 43.75 24.37 68.60 1.67 45.42 16 13 H -0.26 -11.55 6.86 99.48 0.68 -10.87 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 16 C -0.03 -0.79 5.88 -20.07 -0.12 -0.91 16 17 C -0.13 -2.70 9.34 22.58 0.21 -2.49 16 18 C 0.08 1.54 7.29 22.33 0.16 1.71 16 19 F -0.14 -2.85 17.26 44.97 0.78 -2.07 16 20 C -0.13 -2.13 10.01 22.36 0.22 -1.91 16 21 C -0.11 -2.10 9.97 22.33 0.22 -1.88 16 22 C 0.11 2.62 6.71 22.77 0.15 2.77 16 23 O -0.49 -13.69 11.38 -92.28 -1.05 -14.74 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.10 1.91 6.47 -2.39 -0.02 1.90 16 26 H 0.05 1.57 6.35 -2.39 -0.02 1.55 16 27 H 0.37 15.24 6.36 -213.32 -1.36 13.88 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.86 3.25 -2.38 -0.01 1.86 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.16 2.72 6.35 -2.91 -0.02 2.70 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.40 9.10 9.06 -74.06 -0.67 8.42 16 Total: -1.00 -65.97 296.62 2.60 -63.37 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.96 Total: 25.04 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 3.29 Total: -24.63 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -1.13 Total: -92.39 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.05 Total: -14.74 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Total: -65.97 2.60 -63.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.339 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds