Wall clock time and date at job start Mon Mar 30 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47137 * 2 1 4 4 C 1.50706 * 120.00114 * 269.99547 * 3 2 1 5 5 C 1.50694 * 109.47205 * 295.00370 * 4 3 2 6 6 C 1.33398 * 125.20535 * 89.99969 * 5 4 3 7 7 C 1.38417 * 114.92032 * 179.97438 * 6 5 4 8 8 C 1.33385 * 114.92365 * 0.02562 * 7 6 5 9 9 S 1.75881 * 125.20383 * 269.69252 * 5 4 3 10 10 N 1.28003 * 119.99706 * 90.00186 * 3 2 1 11 11 N 1.40091 * 120.00489 * 359.97438 * 10 3 2 12 12 C 1.46502 * 120.00659 * 180.02562 * 11 10 3 13 13 H 1.09002 * 109.46941 * 330.00464 * 12 11 10 14 14 C 1.53003 * 109.47277 * 89.99519 * 12 11 10 15 15 C 1.50699 * 109.47643 * 209.99878 * 12 11 10 16 16 H 1.07997 * 119.99953 * 325.65663 * 15 12 11 17 17 C 1.37882 * 120.00049 * 145.65203 * 15 12 11 18 18 N 1.31507 * 119.99719 * 177.30689 * 17 15 12 19 19 Si 1.86797 * 119.99940 * 357.31410 * 17 15 12 20 20 H 1.48500 * 109.47105 * 274.91738 * 19 17 15 21 21 H 1.48499 * 109.47156 * 34.91462 * 19 17 15 22 22 H 1.48499 * 109.47326 * 154.91645 * 19 17 15 23 23 H 1.08992 * 109.46902 * 300.00366 * 1 2 3 24 24 H 1.09005 * 109.46757 * 59.99691 * 1 2 3 25 25 H 1.08997 * 109.47527 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47118 * 239.99829 * 2 1 3 27 27 H 1.08997 * 109.46794 * 119.99960 * 2 1 3 28 28 H 1.08996 * 109.46511 * 55.00412 * 4 3 2 29 29 H 1.08990 * 109.46962 * 174.99945 * 4 3 2 30 30 H 1.07996 * 122.53407 * 359.95076 * 6 5 4 31 31 H 1.08003 * 122.53330 * 180.02562 * 7 6 5 32 32 H 1.08009 * 125.19953 * 180.02562 * 8 7 6 33 33 H 0.97009 * 119.99978 * 0.02562 * 11 10 3 34 34 H 1.08995 * 109.47301 * 299.04810 * 14 12 11 35 35 H 1.09003 * 109.46748 * 59.04117 * 14 12 11 36 36 H 1.09001 * 109.47431 * 179.03675 * 14 12 11 37 37 H 0.97000 * 120.00087 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2836 2.1312 -1.3051 5 6 3.4080 1.4485 -2.0403 6 6 3.2624 0.4471 -2.9095 7 6 4.4416 -0.0215 -3.4624 8 6 5.5450 0.5989 -3.0419 9 16 5.1125 1.8552 -1.8895 10 7 2.2457 2.0241 1.1086 11 7 2.0118 1.3640 2.3218 12 6 2.2554 2.0547 3.5906 13 1 3.0573 2.7814 3.4605 14 6 0.9802 2.7761 4.0317 15 6 2.6532 1.0502 4.6412 16 1 2.2246 0.0589 4.6303 17 6 3.5645 1.3966 5.6163 18 7 3.8718 0.5380 6.5638 19 14 4.3624 3.0854 5.5913 20 1 5.5470 3.0600 4.6962 21 1 3.3861 4.0867 5.0920 22 1 4.7884 3.4520 6.9658 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3804 2.1018 -1.9145 29 1 2.5552 3.1682 -1.1079 30 1 2.2974 0.0331 -3.1623 31 1 4.4664 -0.8284 -4.1799 32 1 6.5499 0.3685 -3.3640 33 1 1.6884 0.4493 2.3218 34 1 0.7020 3.5145 3.2799 35 1 0.1738 2.0516 4.1453 36 1 1.1564 3.2758 4.9842 37 1 4.5131 0.7815 7.2496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:26 Heat of formation + Delta-G solvation = 60.699140 kcal Electronic energy + Delta-G solvation = -17693.157967 eV Core-core repulsion = 14983.724839 eV Total energy + Delta-G solvation = -2709.433129 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.34591 -37.18430 -34.74354 -32.44407 -31.51650 -30.98415 -28.04174 -26.00303 -25.17189 -23.64770 -23.00919 -20.27769 -19.21228 -18.91566 -17.16781 -16.70386 -15.92315 -15.40204 -15.23736 -14.42151 -13.84501 -13.32957 -13.13763 -13.01617 -12.73571 -12.53322 -12.49841 -12.27800 -12.11523 -11.95393 -11.68329 -11.41666 -11.07409 -10.85391 -10.76702 -10.64595 -10.58547 -10.12392 -9.87558 -9.35432 -9.08509 -8.68658 -8.56149 -8.40240 -6.93043 -6.20433 -4.22949 1.04883 1.71023 2.10394 2.72298 2.96313 3.25882 3.33549 3.37355 3.87948 4.33273 4.94145 4.99830 5.08509 5.17472 5.27373 5.38884 5.53217 5.58975 5.60002 5.70647 5.82384 6.02254 6.07872 6.15056 6.27248 6.32102 6.36308 6.45037 6.55088 6.64694 6.73966 6.86701 7.18360 7.33410 7.60711 8.17608 8.45852 8.82287 9.37168 9.42219 10.91920 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.005185 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.023509 B = 5399.038467 C = 6112.559488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.001 3.999 4 C 0.024 3.976 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.226 4.226 9 S 0.108 5.892 10 N -0.212 5.212 11 N -0.630 5.630 12 C 0.267 3.733 13 H 0.040 0.960 14 C -0.150 4.150 15 C -0.525 4.525 16 H 0.075 0.925 17 C 0.080 3.920 18 N -0.891 5.891 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.261 1.261 22 H -0.287 1.287 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.373 0.627 34 H 0.025 0.975 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 0.989 -19.199 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.193 4.193 4 C -0.017 4.017 5 C -0.271 4.271 6 C -0.178 4.178 7 C -0.164 4.164 8 C -0.362 4.362 9 S 0.372 5.628 10 N -0.022 5.022 11 N -0.368 5.368 12 C 0.164 3.836 13 H 0.058 0.942 14 C -0.209 4.209 15 C -0.564 4.564 16 H 0.093 0.907 17 C -0.124 4.124 18 N -0.528 5.528 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.186 1.186 22 H -0.213 1.213 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.211 0.789 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.427 3.004 -17.594 17.853 hybrid contribution -0.551 -1.542 -0.842 1.841 sum -0.977 1.461 -18.436 18.519 Atomic orbital electron populations 1.21656 0.95125 1.01265 1.01974 1.20778 0.96077 0.95151 1.02867 1.23628 1.08044 0.95076 0.92551 1.18609 0.94328 0.97905 0.90881 1.24477 0.97369 1.02559 1.02668 1.20077 0.99582 0.98369 0.99746 1.20110 0.91662 1.02075 1.02596 1.25606 1.02755 1.03145 1.04696 1.84551 1.00838 1.35003 1.42418 1.73393 1.08484 1.26823 0.93486 1.48983 1.74178 1.14233 0.99426 1.18804 0.92830 0.92733 0.79256 0.94234 1.22345 1.00198 0.98982 0.99406 1.21044 1.25674 1.00170 1.09540 0.90679 1.24932 0.95354 0.97165 0.94975 1.69879 1.33481 1.35376 1.14082 0.86858 0.80498 0.84910 0.77306 1.19906 1.18596 1.21260 0.92665 0.92732 0.92819 0.90952 0.91434 0.89076 0.89650 0.84418 0.84718 0.82318 0.78863 0.95546 0.93783 0.93031 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.11 -1.56 5.51 -27.88 -0.15 -1.71 16 3 C 0.00 0.02 5.79 -78.91 -0.46 -0.44 16 4 C 0.02 0.31 6.10 -29.03 -0.18 0.13 16 5 C -0.15 -1.93 5.47 -36.00 -0.20 -2.12 16 6 C -0.15 -1.65 9.00 -41.21 -0.37 -2.02 16 7 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 8 C -0.23 -2.51 11.23 29.04 0.33 -2.18 16 9 S 0.11 1.41 23.33 -107.50 -2.51 -1.10 16 10 N -0.21 -4.20 11.38 35.60 0.41 -3.79 16 11 N -0.63 -13.70 5.93 -5.88 -0.03 -13.74 16 12 C 0.27 6.48 2.84 -69.08 -0.20 6.28 16 13 H 0.04 1.01 5.43 -51.93 -0.28 0.73 16 14 C -0.15 -3.30 9.48 37.16 0.35 -2.94 16 15 C -0.53 -14.53 9.08 -34.44 -0.31 -14.85 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 18 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 19 Si 0.88 21.52 26.77 -169.99 -4.55 16.97 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.16 6.81 56.52 0.38 -5.77 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.93 6.76 -51.93 -0.35 0.57 16 27 H 0.07 1.11 6.31 -51.93 -0.33 0.78 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 30 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.37 7.82 6.33 -182.60 -1.16 6.66 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -30.02 322.66 -8.71 -38.73 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.33 Total: 4.91 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.34 Total: -20.94 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.14 Total: -43.44 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.55 Total: 16.97 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.02 -8.71 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.434 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds