Wall clock time and date at job start Mon Mar 30 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47137 * 2 1 4 4 C 1.50706 * 120.00114 * 269.99547 * 3 2 1 5 5 C 1.50694 * 109.47205 * 295.00370 * 4 3 2 6 6 C 1.33398 * 125.20535 * 89.99969 * 5 4 3 7 7 C 1.38417 * 114.92032 * 179.97438 * 6 5 4 8 8 C 1.33385 * 114.92365 * 0.02562 * 7 6 5 9 9 S 1.75881 * 125.20383 * 269.69252 * 5 4 3 10 10 N 1.28003 * 119.99706 * 90.00186 * 3 2 1 11 11 N 1.40091 * 120.00489 * 359.97438 * 10 3 2 12 12 C 1.46502 * 120.00659 * 180.02562 * 11 10 3 13 13 H 1.09002 * 109.46941 * 330.00464 * 12 11 10 14 14 C 1.53003 * 109.47277 * 89.99519 * 12 11 10 15 15 C 1.50699 * 109.47643 * 209.99878 * 12 11 10 16 16 H 1.07997 * 119.99953 * 325.65663 * 15 12 11 17 17 C 1.37882 * 120.00049 * 145.65203 * 15 12 11 18 18 N 1.31507 * 119.99719 * 177.30689 * 17 15 12 19 19 Si 1.86797 * 119.99940 * 357.31410 * 17 15 12 20 20 H 1.48500 * 109.47105 * 274.91738 * 19 17 15 21 21 H 1.48499 * 109.47156 * 34.91462 * 19 17 15 22 22 H 1.48499 * 109.47326 * 154.91645 * 19 17 15 23 23 H 1.08992 * 109.46902 * 300.00366 * 1 2 3 24 24 H 1.09005 * 109.46757 * 59.99691 * 1 2 3 25 25 H 1.08997 * 109.47527 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47118 * 239.99829 * 2 1 3 27 27 H 1.08997 * 109.46794 * 119.99960 * 2 1 3 28 28 H 1.08996 * 109.46511 * 55.00412 * 4 3 2 29 29 H 1.08990 * 109.46962 * 174.99945 * 4 3 2 30 30 H 1.07996 * 122.53407 * 359.95076 * 6 5 4 31 31 H 1.08003 * 122.53330 * 180.02562 * 7 6 5 32 32 H 1.08009 * 125.19953 * 180.02562 * 8 7 6 33 33 H 0.97009 * 119.99978 * 0.02562 * 11 10 3 34 34 H 1.08995 * 109.47301 * 299.04810 * 14 12 11 35 35 H 1.09003 * 109.46748 * 59.04117 * 14 12 11 36 36 H 1.09001 * 109.47431 * 179.03675 * 14 12 11 37 37 H 0.97000 * 120.00087 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2836 2.1312 -1.3051 5 6 3.4080 1.4485 -2.0403 6 6 3.2624 0.4471 -2.9095 7 6 4.4416 -0.0215 -3.4624 8 6 5.5450 0.5989 -3.0419 9 16 5.1125 1.8552 -1.8895 10 7 2.2457 2.0241 1.1086 11 7 2.0118 1.3640 2.3218 12 6 2.2554 2.0547 3.5906 13 1 3.0573 2.7814 3.4605 14 6 0.9802 2.7761 4.0317 15 6 2.6532 1.0502 4.6412 16 1 2.2246 0.0589 4.6303 17 6 3.5645 1.3966 5.6163 18 7 3.8718 0.5380 6.5638 19 14 4.3624 3.0854 5.5913 20 1 5.5470 3.0600 4.6962 21 1 3.3861 4.0867 5.0920 22 1 4.7884 3.4520 6.9658 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3804 2.1018 -1.9145 29 1 2.5552 3.1682 -1.1079 30 1 2.2974 0.0331 -3.1623 31 1 4.4664 -0.8284 -4.1799 32 1 6.5499 0.3685 -3.3640 33 1 1.6884 0.4493 2.3218 34 1 0.7020 3.5145 3.2799 35 1 0.1738 2.0516 4.1453 36 1 1.1564 3.2758 4.9842 37 1 4.5131 0.7815 7.2496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:25 Heat of formation + Delta-G solvation = 42.973068 kcal Electronic energy + Delta-G solvation = -17693.926628 eV Core-core repulsion = 14983.724839 eV Total energy + Delta-G solvation = -2710.201789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48883 -38.34837 -36.45267 -34.26002 -32.63576 -32.51100 -29.39057 -27.37474 -27.02847 -24.79216 -23.96269 -22.09937 -20.43261 -20.07075 -18.90875 -17.81952 -17.41935 -16.89897 -16.26845 -15.96215 -15.34632 -14.77235 -14.48553 -14.32535 -14.13932 -14.00874 -13.66283 -13.50081 -13.34312 -13.13100 -12.98673 -12.81008 -12.71981 -12.37577 -12.34617 -11.92545 -11.84709 -11.75793 -11.51142 -11.21468 -10.83679 -10.60222 -9.50256 -9.36914 -8.52585 -8.38420 -6.45100 0.14385 0.79147 1.21540 1.31032 1.33335 1.44286 1.56133 1.94585 2.27595 2.33643 3.04875 3.83686 3.99241 4.11076 4.29425 4.32838 4.45627 4.48064 4.52362 4.76035 4.79046 4.82341 4.84528 4.89526 4.97518 5.01659 5.06824 5.21474 5.32658 5.38876 5.42691 5.46250 5.52216 5.70712 5.82700 6.18389 6.56395 6.68430 7.23672 7.87421 8.77619 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.005185 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.023509 B = 5399.038467 C = 6112.559488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.036 3.964 4 C 0.025 3.975 5 C -0.170 4.170 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.220 4.220 9 S 0.045 5.955 10 N -0.257 5.257 11 N -0.648 5.648 12 C 0.274 3.726 13 H 0.028 0.972 14 C -0.141 4.141 15 C -0.527 4.527 16 H 0.039 0.961 17 C 0.026 3.974 18 N -0.937 5.937 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.244 1.244 22 H -0.278 1.278 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.371 0.629 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 1.287 -22.230 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.159 4.159 4 C -0.016 4.016 5 C -0.288 4.288 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.355 4.355 9 S 0.308 5.692 10 N -0.065 5.065 11 N -0.387 5.387 12 C 0.170 3.830 13 H 0.046 0.954 14 C -0.201 4.201 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.173 4.173 18 N -0.576 5.576 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.168 1.168 22 H -0.203 1.203 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.197 0.803 33 H 0.209 0.791 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.106 3.309 -20.639 20.932 hybrid contribution -0.367 -1.798 -0.178 1.844 sum -1.473 1.511 -20.817 20.923 Atomic orbital electron populations 1.21612 0.93245 1.02482 1.02034 1.20858 0.97598 0.93905 1.02685 1.24461 1.03031 0.95640 0.92806 1.18737 0.96111 0.97235 0.89531 1.24386 0.96252 1.03935 1.04226 1.20451 1.01006 0.96944 0.98113 1.20495 0.91099 1.02441 1.02696 1.25891 1.04170 1.01875 1.03572 1.84797 1.02739 1.37195 1.44428 1.73446 1.11955 1.27558 0.93498 1.48491 1.76227 1.14194 0.99752 1.18514 0.93348 0.91522 0.79642 0.95434 1.22208 0.99114 0.99120 0.99611 1.21259 1.25211 0.99463 1.10725 0.94303 1.25728 0.96057 1.00970 0.94556 1.70004 1.34806 1.37625 1.15210 0.85895 0.79613 0.80750 0.77588 1.20072 1.16796 1.20347 0.94917 0.90271 0.91152 0.88620 0.94018 0.85546 0.90262 0.81768 0.81806 0.80334 0.79070 0.93864 0.93684 0.93310 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.89 71.98 0.71 -2.33 16 2 C -0.11 -2.95 5.51 29.85 0.16 -2.79 16 3 C 0.04 1.08 5.79 46.53 0.27 1.35 16 4 C 0.02 0.57 6.10 29.10 0.18 0.75 16 5 C -0.17 -3.87 5.47 24.59 0.13 -3.74 16 6 C -0.13 -2.48 9.00 21.22 0.19 -2.28 16 7 C -0.14 -2.38 10.18 21.21 0.22 -2.17 16 8 C -0.22 -4.32 11.23 66.72 0.75 -3.57 16 9 S 0.05 1.14 23.33 -56.49 -1.32 -0.18 16 10 N -0.26 -10.09 11.38 -41.20 -0.47 -10.55 16 11 N -0.65 -28.70 5.93 -172.51 -1.02 -29.73 16 12 C 0.27 13.49 2.84 44.25 0.13 13.62 16 13 H 0.03 1.41 5.43 -2.39 -0.01 1.40 16 14 C -0.14 -6.16 9.48 71.98 0.68 -5.48 16 15 C -0.53 -30.24 9.08 25.60 0.23 -30.00 16 16 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 17 C 0.03 1.54 5.47 84.66 0.46 2.00 16 18 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 19 Si 0.94 44.94 26.77 68.60 1.84 46.77 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.24 -10.95 6.81 99.48 0.68 -10.27 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.10 2.11 6.76 -2.38 -0.02 2.09 16 27 H 0.04 1.36 6.31 -2.39 -0.02 1.34 16 28 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.16 2.13 8.04 -2.91 -0.02 2.11 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.37 16.11 6.33 -213.31 -1.35 14.76 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 2.11 7.90 -2.39 -0.02 2.09 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -67.20 322.66 3.12 -64.08 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.32 Total: 21.88 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 4.12 Total: -34.64 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -1.19 Total: -97.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.84 Total: 46.77 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -1.32 Total: -0.18 kcal Total: -67.20 3.12 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.053 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds