Wall clock time and date at job start Mon Mar 30 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35933 * 116.99918 * 2 1 4 4 C 1.38799 * 119.90882 * 0.02562 * 3 2 1 5 5 C 1.37870 * 120.12720 * 179.97438 * 4 3 2 6 6 C 1.39695 * 119.93859 * 0.02562 * 5 4 3 7 7 C 1.47486 * 120.09230 * 179.97438 * 6 5 4 8 8 N 1.29745 * 119.99742 * 179.97438 * 7 6 5 9 9 N 1.40105 * 119.99742 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00063 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.47058 * 330.00507 * 10 9 8 12 12 C 1.52999 * 109.47276 * 89.99692 * 10 9 8 13 13 C 1.50699 * 109.47248 * 209.99951 * 10 9 8 14 14 H 1.08000 * 120.00005 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99921 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99976 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99793 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47039 * 90.00039 * 17 15 13 19 19 H 1.48503 * 109.47257 * 209.99917 * 17 15 13 20 20 H 1.48498 * 109.47398 * 330.00272 * 17 15 13 21 21 C 1.39699 * 119.81692 * 0.25432 * 6 5 4 22 22 C 1.38032 * 119.87013 * 359.48952 * 21 6 5 23 23 F 1.35099 * 119.97073 * 180.25920 * 22 21 6 24 24 H 1.09002 * 109.46616 * 299.99452 * 1 2 3 25 25 H 1.09000 * 109.47074 * 59.99297 * 1 2 3 26 26 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.93357 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.03221 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.99959 * 0.02562 * 7 6 5 30 30 H 0.96999 * 119.99953 * 0.02562 * 9 8 7 31 31 H 1.09007 * 109.46853 * 59.99785 * 12 10 9 32 32 H 1.08996 * 109.47549 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47074 * 300.00425 * 12 10 9 34 34 H 0.97007 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.06710 * 179.72430 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2884 2.3740 0.0005 5 6 1.9096 3.6048 0.0011 6 6 3.3044 3.6818 0.0005 7 6 3.9725 4.9967 0.0005 8 7 5.2681 5.0660 0.0005 9 7 5.9027 6.3151 0.0011 10 6 7.3656 6.3934 0.0005 11 1 7.7762 5.5237 0.5136 12 6 7.8743 6.4216 -1.4422 13 6 7.8017 7.6485 0.7115 14 1 7.0631 8.3204 1.1231 15 6 9.1438 7.9385 0.8376 16 7 10.0432 7.1201 0.3368 17 14 9.6843 9.4946 1.7183 18 1 9.8648 9.2078 3.1641 19 1 10.9691 9.9679 1.1434 20 1 8.6488 10.5452 1.5476 21 6 4.0647 2.5099 -0.0059 22 6 3.4348 1.2817 -0.0011 23 9 4.1681 0.1471 -0.0020 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2099 2.3145 0.0005 28 1 1.3184 4.5087 0.0011 29 1 3.3832 5.9018 0.0014 30 1 5.3735 7.1280 0.0018 31 1 7.4636 7.2912 -1.9553 32 1 8.9627 6.4803 -1.4426 33 1 7.5588 5.5138 -1.9564 34 1 10.9874 7.3240 0.4258 35 1 5.1433 2.5647 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771887965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:00 Heat of formation + Delta-G solvation = -17.810520 kcal Electronic energy + Delta-G solvation = -18881.321067 eV Core-core repulsion = 15602.270327 eV Total energy + Delta-G solvation = -3279.050739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.65123 -39.99398 -37.79973 -36.24892 -34.02011 -31.71120 -30.72350 -29.93503 -27.84699 -26.76142 -25.25728 -23.21307 -22.60215 -20.58875 -20.10194 -18.35582 -17.32642 -16.86747 -16.41173 -16.18800 -15.47383 -15.10163 -15.03807 -14.81494 -14.35521 -14.16216 -13.47822 -12.98312 -12.80030 -12.53419 -12.38297 -12.26128 -11.78158 -11.62110 -11.26008 -11.18660 -11.04206 -10.84311 -10.51919 -10.27336 -10.22008 -9.63819 -9.08779 -8.91990 -8.57596 -8.31887 -6.83216 -6.17202 -4.25946 1.01575 1.19000 2.84584 3.03614 3.22339 3.28755 3.30710 3.69616 3.88268 4.23776 4.33211 4.64147 4.79268 4.90757 4.97901 5.14855 5.16557 5.21807 5.30610 5.61792 5.71863 5.91028 6.08364 6.23481 6.42303 6.66143 6.69503 6.91565 6.95852 7.10551 7.20815 7.53264 7.72638 7.81054 8.09070 8.24216 8.80823 9.23121 9.41027 10.88710 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.003219 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.341270 B = 8696.911734 C = 9033.285909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.080 3.920 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.009 4.009 7 C -0.017 4.017 8 N -0.190 5.190 9 N -0.618 5.618 10 C 0.295 3.705 11 H 0.043 0.957 12 C -0.151 4.151 13 C -0.532 4.532 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.100 4.100 22 C 0.073 3.927 23 F -0.135 7.135 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.370 0.630 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.286 -9.006 -1.321 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.033 3.967 4 C -0.198 4.198 5 C -0.107 4.107 6 C -0.011 4.011 7 C -0.225 4.225 8 N -0.003 5.003 9 N -0.354 5.354 10 C 0.193 3.807 11 H 0.061 0.939 12 C -0.210 4.210 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.121 4.121 22 C 0.053 3.947 23 F -0.113 7.113 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.123 0.877 30 H 0.206 0.794 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.874 -9.747 -1.344 19.533 hybrid contribution -0.643 1.734 0.434 1.899 sum -17.517 -8.014 -0.910 19.284 Atomic orbital electron populations 1.23067 0.78352 1.03934 1.01386 1.86115 1.21373 1.26133 1.89061 1.19019 0.90724 0.85443 1.01530 1.20931 0.99885 0.91286 1.07687 1.20978 0.93260 0.97255 0.99162 1.18156 0.92018 0.91061 0.99911 1.23310 0.91313 0.94973 1.12882 1.73898 1.11060 1.12145 1.03235 1.49125 1.07610 0.98869 1.79811 1.18586 0.71400 0.97572 0.93101 0.93917 1.22210 1.04305 0.96882 0.97617 1.21217 0.92198 1.06852 1.36883 0.92166 1.24862 0.96252 0.97139 0.95369 1.69888 1.01330 1.36541 1.44505 0.86412 0.78099 0.82686 0.79702 1.20501 1.20988 1.19877 1.21273 1.01968 0.89175 0.99701 1.16883 0.85825 0.82905 1.09089 1.91490 1.76752 1.48755 1.94335 0.92553 0.92566 0.88270 0.84656 0.84898 0.87674 0.79386 0.95475 0.89071 0.96779 0.92487 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.78 10.35 -19.53 -0.20 -3.99 16 3 C 0.08 1.03 6.70 -39.08 -0.26 0.77 16 4 C -0.18 -1.88 9.02 -39.51 -0.36 -2.24 16 5 C -0.09 -0.96 9.78 -39.17 -0.38 -1.34 16 6 C -0.01 -0.13 5.87 -105.04 -0.62 -0.74 16 7 C -0.02 -0.28 10.75 -14.67 -0.16 -0.44 16 8 N -0.19 -3.78 10.61 32.16 0.34 -3.44 16 9 N -0.62 -13.39 6.10 -5.88 -0.04 -13.42 16 10 C 0.30 7.44 3.23 -69.08 -0.22 7.22 16 11 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 12 C -0.15 -3.68 9.29 37.16 0.35 -3.34 16 13 C -0.53 -14.14 8.74 -34.44 -0.30 -14.44 16 14 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -24.52 11.32 55.43 0.63 -23.90 16 17 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C -0.10 -1.54 9.55 -39.11 -0.37 -1.91 16 22 C 0.07 1.09 7.30 -39.36 -0.29 0.80 16 23 F -0.13 -2.16 17.10 2.25 0.04 -2.12 16 24 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 25 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.14 0.99 6.27 -52.48 -0.33 0.66 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.11 1.46 8.02 -52.49 -0.42 1.04 16 30 H 0.37 7.35 8.58 -182.59 -1.57 5.79 16 31 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.15 2.50 7.55 -52.49 -0.40 2.10 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -29.38 310.19 -6.78 -36.16 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.48 Total: 3.24 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.72 Total: -12.78 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.93 Total: -40.76 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.38 -6.78 -36.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.346 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds