Wall clock time and date at job start Mon Mar 30 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35933 * 116.99918 * 2 1 4 4 C 1.38799 * 119.90882 * 0.02562 * 3 2 1 5 5 C 1.37870 * 120.12720 * 179.97438 * 4 3 2 6 6 C 1.39695 * 119.93859 * 0.02562 * 5 4 3 7 7 C 1.47486 * 120.09230 * 179.97438 * 6 5 4 8 8 N 1.29745 * 119.99742 * 179.97438 * 7 6 5 9 9 N 1.40105 * 119.99742 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00063 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.47058 * 330.00507 * 10 9 8 12 12 C 1.52999 * 109.47276 * 89.99692 * 10 9 8 13 13 C 1.50699 * 109.47248 * 209.99951 * 10 9 8 14 14 H 1.08000 * 120.00005 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99921 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99976 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99793 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47039 * 90.00039 * 17 15 13 19 19 H 1.48503 * 109.47257 * 209.99917 * 17 15 13 20 20 H 1.48498 * 109.47398 * 330.00272 * 17 15 13 21 21 C 1.39699 * 119.81692 * 0.25432 * 6 5 4 22 22 C 1.38032 * 119.87013 * 359.48952 * 21 6 5 23 23 F 1.35099 * 119.97073 * 180.25920 * 22 21 6 24 24 H 1.09002 * 109.46616 * 299.99452 * 1 2 3 25 25 H 1.09000 * 109.47074 * 59.99297 * 1 2 3 26 26 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.93357 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.03221 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.99959 * 0.02562 * 7 6 5 30 30 H 0.96999 * 119.99953 * 0.02562 * 9 8 7 31 31 H 1.09007 * 109.46853 * 59.99785 * 12 10 9 32 32 H 1.08996 * 109.47549 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47074 * 300.00425 * 12 10 9 34 34 H 0.97007 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.06710 * 179.72430 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2884 2.3740 0.0005 5 6 1.9096 3.6048 0.0011 6 6 3.3044 3.6818 0.0005 7 6 3.9725 4.9967 0.0005 8 7 5.2681 5.0660 0.0005 9 7 5.9027 6.3151 0.0011 10 6 7.3656 6.3934 0.0005 11 1 7.7762 5.5237 0.5136 12 6 7.8743 6.4216 -1.4422 13 6 7.8017 7.6485 0.7115 14 1 7.0631 8.3204 1.1231 15 6 9.1438 7.9385 0.8376 16 7 10.0432 7.1201 0.3368 17 14 9.6843 9.4946 1.7183 18 1 9.8648 9.2078 3.1641 19 1 10.9691 9.9679 1.1434 20 1 8.6488 10.5452 1.5476 21 6 4.0647 2.5099 -0.0059 22 6 3.4348 1.2817 -0.0011 23 9 4.1681 0.1471 -0.0020 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2099 2.3145 0.0005 28 1 1.3184 4.5087 0.0011 29 1 3.3832 5.9018 0.0014 30 1 5.3735 7.1280 0.0018 31 1 7.4636 7.2912 -1.9553 32 1 8.9627 6.4803 -1.4426 33 1 7.5588 5.5138 -1.9564 34 1 10.9874 7.3240 0.4258 35 1 5.1433 2.5647 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771887965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:00 Heat of formation + Delta-G solvation = -36.219758 kcal Electronic energy + Delta-G solvation = -18882.119351 eV Core-core repulsion = 15602.270327 eV Total energy + Delta-G solvation = -3279.849024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.82524 -40.93414 -38.87860 -37.74956 -35.75968 -33.39754 -31.72859 -31.28972 -28.91122 -27.96285 -27.27441 -24.38383 -23.66264 -22.30330 -21.46899 -19.32101 -18.83673 -18.08932 -17.77521 -17.11719 -16.93357 -16.86098 -16.01813 -15.87704 -15.65898 -15.13296 -14.96399 -14.53993 -14.35465 -13.84060 -13.64941 -13.28701 -13.19903 -12.91286 -12.78626 -12.64665 -12.48783 -12.25949 -12.10854 -12.02124 -11.80883 -11.16204 -10.90180 -10.58840 -9.95726 -9.52090 -8.33100 -8.16466 -6.35478 -0.07602 0.17286 1.43272 1.43698 1.54399 1.64830 2.16219 2.23350 2.46978 2.78679 3.11063 3.22331 3.71929 3.84887 4.11337 4.24506 4.43701 4.47079 4.51572 4.56778 4.71174 4.78856 4.91444 4.97927 5.10660 5.13826 5.15095 5.27290 5.44584 5.57917 5.64551 5.78637 5.88553 6.17311 6.33367 6.40764 6.84091 7.36248 7.78856 8.87064 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.003219 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.341270 B = 8696.911734 C = 9033.285909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.056 4.056 6 C -0.041 4.041 7 C 0.029 3.971 8 N -0.249 5.249 9 N -0.638 5.638 10 C 0.307 3.693 11 H -0.001 1.001 12 C -0.137 4.137 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.972 3.028 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.109 4.109 22 C 0.037 3.963 23 F -0.151 7.151 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.174 0.826 29 H 0.136 0.864 30 H 0.376 0.624 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.145 -8.292 -1.051 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.044 3.956 4 C -0.187 4.187 5 C -0.076 4.076 6 C -0.044 4.044 7 C -0.181 4.181 8 N -0.059 5.059 9 N -0.375 5.375 10 C 0.203 3.797 11 H 0.017 0.983 12 C -0.196 4.196 13 C -0.586 4.586 14 H 0.082 0.918 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.796 3.204 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.130 4.130 22 C 0.018 3.982 23 F -0.130 7.130 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.197 0.803 28 H 0.192 0.808 29 H 0.153 0.847 30 H 0.213 0.787 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.761 -9.048 -1.078 22.673 hybrid contribution 0.202 1.244 0.343 1.306 sum -20.559 -7.804 -0.735 22.003 Atomic orbital electron populations 1.23483 0.75426 1.05916 1.03111 1.86110 1.24394 1.25909 1.88563 1.19199 0.89986 0.86882 0.99520 1.21393 1.01822 0.89759 1.05696 1.21410 0.91657 0.99209 0.95363 1.18266 0.93572 0.89540 1.03000 1.23964 0.90631 0.96894 1.06568 1.73962 1.13013 1.11289 1.07641 1.48492 1.06125 0.99746 1.83127 1.18111 0.73838 0.95280 0.92501 0.98349 1.22027 1.02675 0.97180 0.97743 1.21531 0.92663 1.07342 1.37085 0.91820 1.25739 0.96305 1.00234 0.96030 1.70025 1.01587 1.38260 1.45548 0.85356 0.77794 0.78957 0.78285 1.20290 1.20587 1.18822 1.21155 1.01041 0.90386 1.00429 1.17126 0.87171 0.82263 1.11669 1.91436 1.77388 1.49440 1.94729 0.90725 0.90696 0.86513 0.80267 0.80836 0.84654 0.78657 0.94861 0.91340 0.96481 0.92414 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -7.26 10.35 -92.79 -0.96 -8.22 16 3 C 0.09 2.15 6.70 22.60 0.15 2.30 16 4 C -0.17 -2.72 9.02 22.32 0.20 -2.52 16 5 C -0.06 -0.99 9.78 22.53 0.22 -0.77 16 6 C -0.04 -1.10 5.87 -20.14 -0.12 -1.22 16 7 C 0.03 0.89 10.75 87.44 0.94 1.83 16 8 N -0.25 -10.17 10.61 -52.17 -0.55 -10.72 16 9 N -0.64 -28.42 6.10 -172.52 -1.05 -29.47 16 10 C 0.31 16.18 3.23 44.24 0.14 16.33 16 11 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 12 C -0.14 -6.97 9.29 71.98 0.67 -6.30 16 13 C -0.55 -29.79 8.74 25.60 0.22 -29.56 16 14 H 0.06 3.33 7.79 -2.91 -0.02 3.31 16 15 C 0.02 0.93 5.30 84.66 0.45 1.38 16 16 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 17 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 C -0.11 -3.42 9.55 22.57 0.22 -3.21 16 22 C 0.04 1.12 7.30 22.41 0.16 1.29 16 23 F -0.15 -5.08 17.10 44.97 0.77 -4.31 16 24 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 25 H 0.07 0.47 7.65 -2.39 -0.02 0.46 16 26 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.18 1.37 6.27 -2.91 -0.02 1.35 16 28 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.14 3.30 8.02 -2.91 -0.02 3.27 16 30 H 0.38 15.07 8.58 -213.32 -1.83 13.24 16 31 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 35 H 0.12 4.51 7.55 -2.91 -0.02 4.49 16 Total: -1.00 -67.95 310.19 4.12 -63.83 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.72 Total: 15.70 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.37 Total: -19.21 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -1.36 Total: -92.36 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.96 Total: -8.22 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.77 Total: -4.31 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -67.95 4.12 -63.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.610 kcal (2) G-P(sol) polarization free energy of solvation -67.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds