Wall clock time and date at job start Mon Mar 30 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38271 * 119.94899 * 2 1 4 4 C 1.38285 * 120.16181 * 179.97438 * 3 2 1 5 5 C 1.38271 * 120.05284 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.05991 * 179.97438 * 5 4 3 7 7 C 1.39085 * 119.88868 * 359.97438 * 5 4 3 8 8 N 1.39845 * 120.08157 * 179.72668 * 7 5 4 9 9 N 1.40092 * 119.99824 * 180.02562 * 8 7 5 10 10 C 1.34777 * 119.99845 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99892 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47088 * 60.00715 * 12 10 9 14 14 C 1.52998 * 109.47454 * 300.00364 * 12 10 9 15 15 C 1.50701 * 109.47116 * 180.02562 * 12 10 9 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00535 * 180.02562 * 15 12 10 18 18 N 1.31524 * 119.99623 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00677 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47084 * 59.99598 * 19 17 15 21 21 H 1.48493 * 109.47523 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47192 * 299.99995 * 19 17 15 23 23 C 1.38161 * 119.94056 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47618 * 89.99449 * 1 2 3 25 25 H 1.08996 * 109.47502 * 209.99736 * 1 2 3 26 26 H 1.08999 * 109.47117 * 329.99517 * 1 2 3 27 27 H 1.08005 * 119.91433 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97218 * 179.97438 * 4 3 2 29 29 H 0.96994 * 119.99768 * 359.97438 * 8 7 5 30 30 H 0.97003 * 120.00102 * 0.02562 * 9 8 7 31 31 H 1.09001 * 109.47006 * 59.99869 * 14 12 10 32 32 H 1.09000 * 109.47269 * 180.02562 * 14 12 10 33 33 H 1.09005 * 109.46911 * 299.99919 * 14 12 10 34 34 H 0.96999 * 119.99630 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.02383 * 0.04529 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5801 1.2032 0.0005 5 6 4.2770 0.0090 0.0016 6 9 5.6279 0.0138 0.0016 7 6 3.5848 -1.1974 0.0027 8 7 4.2855 -2.4076 -0.0020 9 7 3.5866 -3.6217 -0.0014 10 6 4.2619 -4.7881 -0.0065 11 8 5.4747 -4.7866 -0.0110 12 6 3.5100 -6.0941 -0.0053 13 1 2.8795 -6.1512 -0.8926 14 6 2.6361 -6.1784 1.2477 15 6 4.4908 -7.2383 -0.0111 16 1 5.5524 -7.0396 -0.0147 17 6 4.0329 -8.5388 -0.0116 18 7 2.7401 -8.7808 -0.0066 19 14 5.2485 -9.9571 -0.0180 20 1 6.1063 -9.8793 1.1917 21 1 4.5077 -11.2441 -0.0170 22 1 6.0981 -9.8755 -1.2333 23 6 2.1965 -1.1972 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6550 2.1321 -0.0004 28 1 4.1162 2.1408 0.0001 29 1 5.2555 -2.4063 -0.0064 30 1 2.6166 -3.6229 0.0018 31 1 1.9268 -5.3508 1.2522 32 1 2.0926 -7.1233 1.2487 33 1 3.2667 -6.1214 2.1350 34 1 2.4180 -9.6958 -0.0074 35 1 1.6559 -2.1322 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830821871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:10 Heat of formation + Delta-G solvation = -30.157849 kcal Electronic energy + Delta-G solvation = -19548.291534 eV Core-core repulsion = 16268.705375 eV Total energy + Delta-G solvation = -3279.586160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.74795 -39.72889 -38.71432 -35.76628 -33.89480 -32.64211 -31.65429 -30.39838 -28.27285 -26.53555 -25.24336 -23.40479 -22.08605 -21.71645 -19.81758 -18.00541 -17.33676 -16.89486 -16.24449 -15.63122 -15.60980 -15.37665 -14.56121 -14.42525 -14.32566 -13.85874 -13.73626 -13.38983 -13.20628 -12.82572 -12.39925 -12.15097 -11.85182 -11.68937 -11.25176 -11.13349 -11.08868 -10.83646 -10.77912 -10.38455 -10.06590 -9.20415 -9.11099 -8.92834 -8.69060 -8.45161 -7.06566 -6.12552 -4.16601 1.11800 1.35496 2.27733 3.32113 3.34811 3.40765 3.43094 3.62561 4.22676 4.36347 4.48296 4.67873 4.73935 5.10979 5.21131 5.26871 5.30521 5.46794 5.67364 5.71823 5.81095 5.91752 6.05818 6.20510 6.46742 6.48915 6.66857 6.71870 6.76343 7.10365 7.33318 7.61406 7.68817 7.93810 8.00527 8.23874 8.91786 9.03110 9.49369 10.95026 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031638 B = 0.004204 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.788210 B = 6659.355968 C = 7448.368488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.094 4.094 5 C 0.008 3.992 6 F -0.144 7.144 7 C 0.205 3.795 8 N -0.538 5.538 9 N -0.540 5.540 10 C 0.520 3.480 11 O -0.541 6.541 12 C 0.044 3.956 13 H 0.059 0.941 14 C -0.136 4.136 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.185 4.185 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.435 0.565 30 H 0.417 0.583 31 H 0.013 0.987 32 H 0.098 0.902 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 17.713 0.288 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.184 4.184 4 C -0.113 4.113 5 C -0.017 4.017 6 F -0.123 7.123 7 C 0.097 3.903 8 N -0.259 5.259 9 N -0.290 5.290 10 C 0.309 3.691 11 O -0.415 6.415 12 C 0.021 3.979 13 H 0.076 0.924 14 C -0.194 4.194 15 C -0.544 4.544 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.208 4.208 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.278 0.722 30 H 0.259 0.741 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.405 17.291 0.287 18.118 hybrid contribution 0.792 -0.717 0.001 1.068 sum -4.613 16.574 0.288 17.207 Atomic orbital electron populations 1.20818 0.90783 1.03033 1.02611 1.19664 0.96092 0.92184 0.96009 1.20583 0.92843 0.97679 1.07317 1.20842 0.94777 0.96021 0.99700 1.16961 0.76858 0.92620 1.15249 1.91451 1.28651 1.97213 1.94976 1.17799 0.92134 0.83624 0.96698 1.43397 1.07048 0.94653 1.80823 1.45764 1.08115 0.95880 1.79208 1.22599 0.89181 0.83822 0.73455 1.90564 1.14744 1.86827 1.49346 1.18892 0.95520 0.86177 0.97310 0.92376 1.21814 0.98230 1.02215 0.97136 1.21053 0.93523 0.89004 1.50790 0.90670 1.24936 0.95461 0.98863 0.94797 1.69852 1.12388 1.20517 1.50637 0.86442 0.80840 0.80601 0.78910 1.20126 1.21267 1.20112 1.20249 0.90718 0.98806 1.11073 0.90813 0.91208 0.91326 0.85523 0.84820 0.72228 0.74131 0.96847 0.88383 0.94649 0.92709 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.04 -0.40 5.88 -104.64 -0.62 -1.01 16 3 C -0.16 -1.60 9.69 -39.55 -0.38 -1.98 16 4 C -0.09 -1.02 10.02 -39.55 -0.40 -1.42 16 5 C 0.01 0.11 7.31 -39.26 -0.29 -0.17 16 6 F -0.14 -2.12 16.64 2.25 0.04 -2.08 16 7 C 0.21 2.96 6.73 -83.67 -0.56 2.40 16 8 N -0.54 -9.05 6.46 32.46 0.21 -8.84 16 9 N -0.54 -9.62 6.11 31.22 0.19 -9.43 16 10 C 0.52 11.65 7.27 -10.98 -0.08 11.57 16 11 O -0.54 -13.92 15.30 5.56 0.08 -13.83 16 12 C 0.04 1.05 2.64 -92.92 -0.25 0.80 16 13 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.14 -2.98 8.87 37.16 0.33 -2.65 16 15 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 16 H 0.08 2.20 6.75 -52.48 -0.35 1.84 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.90 -24.32 11.32 55.43 0.63 -23.69 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.18 -2.29 9.13 -39.39 -0.36 -2.65 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.43 7.75 7.49 -182.61 -1.37 6.38 16 30 H 0.42 6.29 6.03 -182.60 -1.10 5.19 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 32 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.13 1.45 6.21 -52.49 -0.33 1.13 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -30.20 303.03 -7.87 -38.07 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.95 Total: 7.17 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.62 Total: -8.33 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.03 Total: -41.96 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.20 -7.87 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830821871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.913 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds