Wall clock time and date at job start Mon Mar 30 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38271 * 119.94899 * 2 1 4 4 C 1.38285 * 120.16181 * 179.97438 * 3 2 1 5 5 C 1.38271 * 120.05284 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.05991 * 179.97438 * 5 4 3 7 7 C 1.39085 * 119.88868 * 359.97438 * 5 4 3 8 8 N 1.39845 * 120.08157 * 179.72668 * 7 5 4 9 9 N 1.40092 * 119.99824 * 180.02562 * 8 7 5 10 10 C 1.34777 * 119.99845 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99892 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47088 * 60.00715 * 12 10 9 14 14 C 1.52998 * 109.47454 * 300.00364 * 12 10 9 15 15 C 1.50701 * 109.47116 * 180.02562 * 12 10 9 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00535 * 180.02562 * 15 12 10 18 18 N 1.31524 * 119.99623 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00677 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47084 * 59.99598 * 19 17 15 21 21 H 1.48493 * 109.47523 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47192 * 299.99995 * 19 17 15 23 23 C 1.38161 * 119.94056 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47618 * 89.99449 * 1 2 3 25 25 H 1.08996 * 109.47502 * 209.99736 * 1 2 3 26 26 H 1.08999 * 109.47117 * 329.99517 * 1 2 3 27 27 H 1.08005 * 119.91433 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97218 * 179.97438 * 4 3 2 29 29 H 0.96994 * 119.99768 * 359.97438 * 8 7 5 30 30 H 0.97003 * 120.00102 * 0.02562 * 9 8 7 31 31 H 1.09001 * 109.47006 * 59.99869 * 14 12 10 32 32 H 1.09000 * 109.47269 * 180.02562 * 14 12 10 33 33 H 1.09005 * 109.46911 * 299.99919 * 14 12 10 34 34 H 0.96999 * 119.99630 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.02383 * 0.04529 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5801 1.2032 0.0005 5 6 4.2770 0.0090 0.0016 6 9 5.6279 0.0138 0.0016 7 6 3.5848 -1.1974 0.0027 8 7 4.2855 -2.4076 -0.0020 9 7 3.5866 -3.6217 -0.0014 10 6 4.2619 -4.7881 -0.0065 11 8 5.4747 -4.7866 -0.0110 12 6 3.5100 -6.0941 -0.0053 13 1 2.8795 -6.1512 -0.8926 14 6 2.6361 -6.1784 1.2477 15 6 4.4908 -7.2383 -0.0111 16 1 5.5524 -7.0396 -0.0147 17 6 4.0329 -8.5388 -0.0116 18 7 2.7401 -8.7808 -0.0066 19 14 5.2485 -9.9571 -0.0180 20 1 6.1063 -9.8793 1.1917 21 1 4.5077 -11.2441 -0.0170 22 1 6.0981 -9.8755 -1.2333 23 6 2.1965 -1.1972 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6550 2.1321 -0.0004 28 1 4.1162 2.1408 0.0001 29 1 5.2555 -2.4063 -0.0064 30 1 2.6166 -3.6229 0.0018 31 1 1.9268 -5.3508 1.2522 32 1 2.0926 -7.1233 1.2487 33 1 3.2667 -6.1214 2.1350 34 1 2.4180 -9.6958 -0.0074 35 1 1.6559 -2.1322 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830821871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:10 Heat of formation + Delta-G solvation = -48.525120 kcal Electronic energy + Delta-G solvation = -19549.087999 eV Core-core repulsion = 16268.705375 eV Total energy + Delta-G solvation = -3280.382624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.81928 -41.07924 -40.01754 -37.11414 -35.86006 -33.80049 -32.92381 -32.00117 -29.43616 -27.38328 -27.21665 -24.90723 -23.36620 -22.78484 -21.32642 -19.28180 -18.69126 -18.17041 -18.02188 -17.11712 -16.71907 -16.69888 -16.25362 -16.06858 -15.24372 -15.08875 -14.74587 -14.61890 -14.46052 -14.27131 -13.78539 -13.43228 -13.01229 -12.81747 -12.75665 -12.67377 -12.62933 -12.30678 -12.13719 -12.11069 -12.02422 -11.11369 -10.79291 -10.47284 -10.40828 -9.61588 -8.29700 -8.18406 -6.29070 0.20608 0.40890 0.90949 1.42189 1.42777 1.51991 1.72546 2.42153 2.67041 3.11816 3.18198 3.26732 3.77472 3.95856 4.08544 4.31119 4.41135 4.53100 4.68733 4.86613 4.87876 4.92335 4.94192 4.96849 5.06755 5.29004 5.36447 5.41094 5.56571 5.67943 5.71048 5.84985 6.02502 6.15499 6.34601 6.63647 6.78744 7.34221 7.44312 8.87215 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031638 B = 0.004204 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.788210 B = 6659.355968 C = 7448.368488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.013 4.013 6 F -0.157 7.157 7 C 0.178 3.822 8 N -0.552 5.552 9 N -0.518 5.518 10 C 0.521 3.479 11 O -0.584 6.584 12 C 0.040 3.960 13 H 0.053 0.947 14 C -0.123 4.123 15 C -0.534 4.534 16 H 0.049 0.951 17 C 0.025 3.975 18 N -0.907 5.907 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.277 1.277 23 C -0.192 4.192 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.159 0.841 29 H 0.426 0.574 30 H 0.431 0.569 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 19.630 0.410 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.169 4.169 4 C -0.112 4.112 5 C -0.037 4.037 6 F -0.136 7.136 7 C 0.074 3.926 8 N -0.276 5.276 9 N -0.266 5.266 10 C 0.310 3.690 11 O -0.461 6.461 12 C 0.018 3.982 13 H 0.071 0.929 14 C -0.182 4.182 15 C -0.572 4.572 16 H 0.067 0.933 17 C -0.175 4.175 18 N -0.545 5.545 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.197 1.197 22 H -0.203 1.203 23 C -0.215 4.215 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.181 0.819 28 H 0.176 0.824 29 H 0.267 0.733 30 H 0.275 0.725 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.483 19.273 0.410 20.679 hybrid contribution 1.291 -1.102 -0.053 1.698 sum -6.192 18.171 0.357 19.200 Atomic orbital electron populations 1.20904 0.88415 1.04233 1.03648 1.20082 0.97797 0.91567 0.94427 1.21072 0.92423 0.98952 1.04438 1.21211 0.95524 0.95885 0.98539 1.17371 0.76560 0.93443 1.16370 1.91415 1.29685 1.97305 1.95204 1.18096 0.93018 0.82795 0.98668 1.43388 1.06675 0.94480 1.83086 1.45171 1.08504 0.95906 1.77067 1.22124 0.88428 0.84741 0.73714 1.90536 1.16315 1.87551 1.51735 1.18786 0.95093 0.86391 0.97944 0.92897 1.21637 0.98183 1.02807 0.95534 1.21195 0.93083 0.90956 1.51982 0.93289 1.25536 0.97040 1.00590 0.94353 1.69919 1.13145 1.21117 1.50352 0.85643 0.79102 0.78554 0.78523 1.20300 1.19749 1.20288 1.20510 0.89963 1.00204 1.10858 0.89700 0.90974 0.89287 0.81940 0.82362 0.73263 0.72476 0.92688 0.90394 0.95694 0.92366 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.01 71.23 0.71 -0.56 16 2 C -0.04 -0.66 5.88 -19.88 -0.12 -0.77 16 3 C -0.15 -2.30 9.69 22.29 0.22 -2.09 16 4 C -0.09 -1.77 10.02 22.29 0.22 -1.54 16 5 C -0.01 -0.34 7.31 22.48 0.16 -0.17 16 6 F -0.16 -4.68 16.64 44.97 0.75 -3.93 16 7 C 0.18 5.06 6.73 38.21 0.26 5.32 16 8 N -0.55 -18.92 6.46 -51.21 -0.33 -19.25 16 9 N -0.52 -18.55 6.11 -173.53 -1.06 -19.61 16 10 C 0.52 23.95 7.27 87.66 0.64 24.59 16 11 O -0.58 -31.34 15.30 -3.04 -0.05 -31.39 16 12 C 0.04 1.98 2.64 -12.29 -0.03 1.95 16 13 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 14 C -0.12 -5.39 8.87 71.98 0.64 -4.75 16 15 C -0.53 -30.35 8.37 25.60 0.21 -30.13 16 16 H 0.05 2.99 6.75 -2.91 -0.02 2.98 16 17 C 0.02 1.35 5.30 84.65 0.45 1.80 16 18 N -0.91 -49.30 11.32 21.45 0.24 -49.06 16 19 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 C -0.19 -4.41 9.13 22.39 0.20 -4.21 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.79 8.08 -2.39 -0.02 0.78 16 26 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 27 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 28 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.43 15.92 7.49 -213.33 -1.60 14.32 16 30 H 0.43 12.63 6.03 -213.32 -1.29 11.34 16 31 H 0.05 1.88 7.57 -2.39 -0.02 1.86 16 32 H 0.08 3.75 6.07 -2.39 -0.01 3.73 16 33 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.13 2.79 6.21 -2.91 -0.02 2.77 16 Total: -1.00 -66.96 303.03 3.40 -63.56 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -1.75 Total: 23.98 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 3.57 Total: -10.58 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -1.15 Total: -87.92 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.75 Total: -3.93 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.96 3.40 -63.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830821871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.032 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds