Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38199 * 120.02511 * 2 1 4 4 C 1.38227 * 120.11159 * 179.97438 * 3 2 1 5 5 C 1.38330 * 120.16116 * 0.23017 * 4 3 2 6 6 C 1.38240 * 120.04977 * 359.49405 * 5 4 3 7 7 F 1.35095 * 120.05949 * 180.25054 * 6 5 4 8 8 C 1.38790 * 120.02887 * 179.97438 * 2 1 3 9 9 N 1.39850 * 120.07421 * 0.02562 * 8 2 1 10 10 N 1.40098 * 119.99667 * 215.33252 * 9 8 2 11 11 C 1.34777 * 119.99944 * 185.29342 * 10 9 8 12 12 O 1.21283 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00098 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47856 * 60.00065 * 13 11 10 15 15 C 1.53009 * 109.47128 * 299.99856 * 13 11 10 16 16 C 1.50703 * 109.47174 * 180.02562 * 13 11 10 17 17 H 1.08001 * 119.99811 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00031 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99926 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 120.00189 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47034 * 59.99657 * 20 18 16 22 22 H 1.48496 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46829 * 300.00011 * 20 18 16 24 24 H 1.08995 * 109.46886 * 90.00308 * 1 2 3 25 25 H 1.08998 * 109.47207 * 210.00116 * 1 2 3 26 26 H 1.08997 * 109.47049 * 330.00572 * 1 2 3 27 27 H 1.08004 * 119.94381 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.91926 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.97722 * 179.71575 * 5 4 3 30 30 H 0.96998 * 119.99889 * 35.33810 * 9 8 2 31 31 H 0.96999 * 120.00565 * 5.30483 * 10 9 8 32 32 H 1.08997 * 109.46720 * 300.00277 * 15 13 11 33 33 H 1.08994 * 109.46409 * 60.00036 * 15 13 11 34 34 H 1.08995 * 109.46830 * 180.02562 * 15 13 11 35 35 H 0.97005 * 119.99534 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1965 0.0000 4 6 3.5808 1.1986 0.0005 5 6 4.2776 0.0037 -0.0037 6 6 3.5927 -1.1971 0.0020 7 9 4.2731 -2.3642 0.0030 8 6 2.2016 -1.2016 0.0005 9 7 1.5045 -2.4140 0.0005 10 7 2.0132 -3.5144 0.7027 11 6 1.3994 -4.7112 0.6163 12 8 0.4069 -4.8356 -0.0696 13 6 1.9463 -5.8948 1.3720 14 1 1.9467 -5.6756 2.4397 15 6 3.3767 -6.1788 0.9091 16 6 1.0840 -7.1020 1.1070 17 1 0.2257 -7.0202 0.4566 18 6 1.3910 -8.3109 1.6946 19 7 2.4366 -8.4105 2.4861 20 14 0.3227 -9.8075 1.3655 21 1 0.3228 -10.1055 -0.0893 22 1 0.8615 -10.9738 2.1103 23 1 -1.0659 -9.5327 1.8144 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6580 2.1316 -0.0004 28 1 4.1181 2.1355 0.0001 29 1 5.3576 0.0088 -0.0079 30 1 0.6689 -2.4930 -0.4856 31 1 2.8071 -3.4151 1.2511 32 1 3.3762 -6.3980 -0.1586 33 1 4.0005 -5.3057 1.1005 34 1 3.7720 -7.0351 1.4554 35 1 2.6528 -9.2612 2.8993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832363727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = -26.496547 kcal Electronic energy + Delta-G solvation = -19943.255320 eV Core-core repulsion = 16663.827927 eV Total energy + Delta-G solvation = -3279.427394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.73761 -39.65243 -38.65492 -35.48390 -33.80004 -32.84679 -31.47626 -30.23354 -28.02703 -26.83193 -25.16183 -23.00931 -21.98139 -21.81155 -19.85685 -17.89996 -16.99184 -16.85549 -16.19281 -15.88029 -15.61125 -15.38659 -14.58111 -14.32836 -14.23787 -13.77060 -13.71563 -13.27890 -13.06268 -12.61679 -12.26620 -12.04824 -11.83643 -11.64127 -11.32861 -11.03324 -10.98734 -10.73366 -10.71408 -10.29690 -10.01166 -9.07864 -9.03252 -8.77892 -8.72178 -8.38261 -7.05212 -6.06176 -4.10077 1.10365 1.20900 2.50641 3.35289 3.37816 3.43620 3.48365 3.64538 4.19173 4.42485 4.61972 4.74476 4.78003 5.10128 5.17258 5.27146 5.43729 5.51561 5.53440 5.85746 5.96433 5.99089 6.05936 6.24748 6.37651 6.60166 6.72881 6.80891 6.87087 7.21435 7.43701 7.72912 7.78889 8.02997 8.12297 8.35154 8.98086 9.17108 9.55400 11.01374 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.036674 B = 0.004503 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.297780 B = 6216.729350 C = 6820.022711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C -0.092 4.092 4 C -0.138 4.138 5 C -0.121 4.121 6 C 0.038 3.962 7 F -0.135 7.135 8 C 0.178 3.822 9 N -0.553 5.553 10 N -0.537 5.537 11 C 0.520 3.480 12 O -0.548 6.548 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.135 4.135 16 C -0.503 4.503 17 H 0.075 0.925 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.432 0.568 31 H 0.417 0.583 32 H 0.033 0.967 33 H 0.014 0.986 34 H 0.096 0.904 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 18.951 -2.913 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.159 4.159 5 C -0.140 4.140 6 C 0.014 3.986 7 F -0.114 7.114 8 C 0.074 3.926 9 N -0.280 5.280 10 N -0.286 5.286 11 C 0.310 3.690 12 O -0.423 6.423 13 C 0.020 3.980 14 H 0.074 0.926 15 C -0.193 4.193 16 C -0.542 4.542 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.275 0.725 31 H 0.258 0.742 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.146 18.473 -3.198 18.870 hybrid contribution -0.149 -0.941 -0.102 0.958 sum 1.998 17.532 -3.299 17.951 Atomic orbital electron populations 1.20698 0.90425 1.03376 1.02439 1.19477 0.96434 0.90720 1.05641 1.20853 0.94030 0.96828 0.99331 1.20775 0.94012 0.97247 1.03828 1.20963 1.00547 0.90813 1.01720 1.17517 0.88530 0.82200 1.10397 1.91484 1.79536 1.45988 1.94362 1.17599 0.89250 0.85650 1.00138 1.43192 1.26290 1.01934 1.56598 1.45748 1.32242 1.02562 1.47998 1.22466 0.83243 0.81697 0.81605 1.90534 1.26443 1.83653 1.41652 1.18868 0.94853 0.88778 0.95502 0.92602 1.21790 0.95705 1.01296 1.00501 1.21058 1.11729 0.92284 1.29080 0.90716 1.24944 0.95419 0.98917 0.94854 1.69864 1.26489 1.25825 1.31236 0.86458 0.80546 0.81421 0.78430 1.20163 1.21313 1.20163 0.91147 0.91169 0.91066 0.85404 0.85395 0.84892 0.72469 0.74193 0.94782 0.96690 0.88540 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.48 36.01 0.34 -0.76 16 2 C -0.12 -1.34 5.90 -104.43 -0.62 -1.96 16 3 C -0.09 -0.86 9.69 -39.60 -0.38 -1.25 16 4 C -0.14 -1.28 10.04 -39.55 -0.40 -1.68 16 5 C -0.12 -1.34 10.02 -39.55 -0.40 -1.74 16 6 C 0.04 0.53 7.08 -39.26 -0.28 0.25 16 7 F -0.13 -2.17 15.09 2.25 0.03 -2.14 16 8 C 0.18 2.53 6.51 -83.67 -0.54 1.98 16 9 N -0.55 -9.20 5.72 32.46 0.19 -9.01 16 10 N -0.54 -10.23 5.51 31.22 0.17 -10.06 16 11 C 0.52 12.09 7.27 -10.99 -0.08 12.01 16 12 O -0.55 -14.23 15.31 5.55 0.09 -14.14 16 13 C 0.04 1.07 2.64 -92.92 -0.25 0.82 16 14 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.13 -3.16 8.87 37.16 0.33 -2.83 16 16 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 17 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.90 -25.00 11.32 55.43 0.63 -24.38 16 20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.79 7.18 -51.93 -0.37 0.42 16 26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.43 7.16 7.19 -182.60 -1.31 5.85 16 31 H 0.42 7.38 6.59 -182.60 -1.20 6.18 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.01 0.29 7.56 -51.93 -0.39 -0.10 16 34 H 0.10 2.45 6.07 -51.93 -0.31 2.14 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -30.93 301.31 -8.07 -39.00 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.04 Total: 7.54 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.65 Total: -8.10 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.98 Total: -43.44 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.03 Total: -2.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.93 -8.07 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832363727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.503 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds