Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38199 * 120.02511 * 2 1 4 4 C 1.38227 * 120.11159 * 179.97438 * 3 2 1 5 5 C 1.38330 * 120.16116 * 0.23017 * 4 3 2 6 6 C 1.38240 * 120.04977 * 359.49405 * 5 4 3 7 7 F 1.35095 * 120.05949 * 180.25054 * 6 5 4 8 8 C 1.38790 * 120.02887 * 179.97438 * 2 1 3 9 9 N 1.39850 * 120.07421 * 0.02562 * 8 2 1 10 10 N 1.40098 * 119.99667 * 215.33252 * 9 8 2 11 11 C 1.34777 * 119.99944 * 185.29342 * 10 9 8 12 12 O 1.21283 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00098 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47856 * 60.00065 * 13 11 10 15 15 C 1.53009 * 109.47128 * 299.99856 * 13 11 10 16 16 C 1.50703 * 109.47174 * 180.02562 * 13 11 10 17 17 H 1.08001 * 119.99811 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00031 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99926 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 120.00189 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47034 * 59.99657 * 20 18 16 22 22 H 1.48496 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46829 * 300.00011 * 20 18 16 24 24 H 1.08995 * 109.46886 * 90.00308 * 1 2 3 25 25 H 1.08998 * 109.47207 * 210.00116 * 1 2 3 26 26 H 1.08997 * 109.47049 * 330.00572 * 1 2 3 27 27 H 1.08004 * 119.94381 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.91926 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.97722 * 179.71575 * 5 4 3 30 30 H 0.96998 * 119.99889 * 35.33810 * 9 8 2 31 31 H 0.96999 * 120.00565 * 5.30483 * 10 9 8 32 32 H 1.08997 * 109.46720 * 300.00277 * 15 13 11 33 33 H 1.08994 * 109.46409 * 60.00036 * 15 13 11 34 34 H 1.08995 * 109.46830 * 180.02562 * 15 13 11 35 35 H 0.97005 * 119.99534 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1965 0.0000 4 6 3.5808 1.1986 0.0005 5 6 4.2776 0.0037 -0.0037 6 6 3.5927 -1.1971 0.0020 7 9 4.2731 -2.3642 0.0030 8 6 2.2016 -1.2016 0.0005 9 7 1.5045 -2.4140 0.0005 10 7 2.0132 -3.5144 0.7027 11 6 1.3994 -4.7112 0.6163 12 8 0.4069 -4.8356 -0.0696 13 6 1.9463 -5.8948 1.3720 14 1 1.9467 -5.6756 2.4397 15 6 3.3767 -6.1788 0.9091 16 6 1.0840 -7.1020 1.1070 17 1 0.2257 -7.0202 0.4566 18 6 1.3910 -8.3109 1.6946 19 7 2.4366 -8.4105 2.4861 20 14 0.3227 -9.8075 1.3655 21 1 0.3228 -10.1055 -0.0893 22 1 0.8615 -10.9738 2.1103 23 1 -1.0659 -9.5327 1.8144 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6580 2.1316 -0.0004 28 1 4.1181 2.1355 0.0001 29 1 5.3576 0.0088 -0.0079 30 1 0.6689 -2.4930 -0.4856 31 1 2.8071 -3.4151 1.2511 32 1 3.3762 -6.3980 -0.1586 33 1 4.0005 -5.3057 1.1005 34 1 3.7720 -7.0351 1.4554 35 1 2.6528 -9.2612 2.8993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832363727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = -45.455290 kcal Electronic energy + Delta-G solvation = -19944.077433 eV Core-core repulsion = 16663.827927 eV Total energy + Delta-G solvation = -3280.249506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.86281 -40.95354 -40.04897 -36.86296 -35.83731 -33.92231 -32.96929 -31.82836 -29.16306 -27.74312 -27.24075 -24.72406 -23.10688 -22.81898 -21.48662 -19.21914 -18.50345 -18.12132 -17.84253 -17.16292 -17.04033 -16.57834 -16.35917 -15.97435 -15.38966 -15.10554 -14.75606 -14.54839 -14.45473 -14.09279 -13.62971 -13.10769 -13.08412 -13.00074 -12.76190 -12.64929 -12.62112 -12.37013 -12.24764 -12.03818 -11.97420 -11.11628 -10.76569 -10.48239 -10.20208 -9.60346 -8.32964 -8.17629 -6.29140 0.21810 0.28074 1.13979 1.41873 1.43304 1.52455 1.77202 2.42470 2.65909 3.12065 3.22139 3.35025 3.84062 4.02084 4.13433 4.28995 4.38779 4.63775 4.66176 4.68044 4.79271 4.86480 4.92052 5.06195 5.15151 5.26369 5.39471 5.43143 5.53956 5.64556 5.71205 5.85027 6.03123 6.16476 6.43051 6.72450 6.81247 7.36173 7.49544 8.88313 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.036674 B = 0.004503 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.297780 B = 6216.729350 C = 6820.022711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.125 4.125 6 C 0.009 3.991 7 F -0.155 7.155 8 C 0.146 3.854 9 N -0.561 5.561 10 N -0.521 5.521 11 C 0.521 3.479 12 O -0.584 6.584 13 C 0.038 3.962 14 H 0.047 0.953 15 C -0.120 4.120 16 C -0.531 4.531 17 H 0.052 0.948 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.274 1.274 23 H -0.275 1.275 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.429 0.571 31 H 0.423 0.577 32 H 0.023 0.977 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 21.568 -2.990 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.014 4.014 7 F -0.134 7.134 8 C 0.045 3.955 9 N -0.291 5.291 10 N -0.267 5.267 11 C 0.309 3.691 12 O -0.462 6.462 13 C 0.016 3.984 14 H 0.065 0.935 15 C -0.179 4.179 16 C -0.569 4.569 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.198 1.198 23 H -0.200 1.200 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.183 0.817 28 H 0.184 0.816 29 H 0.169 0.831 30 H 0.271 0.729 31 H 0.266 0.734 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.647 21.160 -3.254 21.571 hybrid contribution -0.218 -1.501 -0.073 1.519 sum 2.429 19.659 -3.326 20.085 Atomic orbital electron populations 1.20747 0.89422 1.03566 1.03175 1.19814 0.97358 0.90445 1.04425 1.21325 0.94402 0.97265 0.97371 1.21291 0.94176 0.97917 1.00614 1.21289 1.01670 0.90306 1.01121 1.17978 0.88780 0.82618 1.12044 1.91423 1.79906 1.47339 1.94736 1.17946 0.89533 0.85380 1.02669 1.43206 1.26776 1.01764 1.57400 1.45232 1.31430 1.02671 1.47339 1.21911 0.83059 0.82642 0.81440 1.90500 1.27953 1.84458 1.43304 1.18759 0.95329 0.89109 0.95229 0.93544 1.21595 0.95205 1.01761 0.99295 1.21193 1.11993 0.94204 1.29540 0.92984 1.25617 0.96556 1.01160 0.94512 1.69944 1.27104 1.26574 1.31258 0.85578 0.79010 0.78579 0.78260 1.20184 1.19834 1.20019 0.90129 0.93278 0.88521 0.81717 0.81590 0.83115 0.72851 0.73436 0.95781 0.93698 0.90411 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.48 71.24 0.68 -1.30 16 2 C -0.12 -2.39 5.90 -19.74 -0.12 -2.50 16 3 C -0.09 -1.23 9.69 22.26 0.22 -1.02 16 4 C -0.12 -1.68 10.04 22.29 0.22 -1.46 16 5 C -0.12 -2.43 10.02 22.29 0.22 -2.21 16 6 C 0.01 0.26 7.08 22.48 0.16 0.42 16 7 F -0.15 -5.03 15.09 44.97 0.68 -4.35 16 8 C 0.15 4.06 6.51 38.20 0.25 4.31 16 9 N -0.56 -19.09 5.72 -51.21 -0.29 -19.38 16 10 N -0.52 -20.41 5.51 -173.53 -0.96 -21.37 16 11 C 0.52 25.13 7.27 87.66 0.64 25.77 16 12 O -0.58 -31.65 15.31 -3.04 -0.05 -31.70 16 13 C 0.04 1.99 2.64 -12.28 -0.03 1.96 16 14 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.12 -5.77 8.87 71.99 0.64 -5.13 16 16 C -0.53 -31.06 8.37 25.60 0.21 -30.84 16 17 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 18 C 0.02 1.19 5.30 84.65 0.45 1.64 16 19 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.09 7.18 -2.39 -0.02 1.07 16 26 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 28 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.43 14.78 7.19 -213.32 -1.53 13.24 16 31 H 0.42 15.33 6.59 -213.32 -1.41 13.92 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.82 7.56 -2.39 -0.02 1.80 16 34 H 0.08 4.03 6.07 -2.39 -0.01 4.01 16 35 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -68.92 301.31 3.38 -65.54 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.81 Total: 25.62 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 3.54 Total: -10.38 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -1.01 Total: -91.83 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.68 Total: -4.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.92 3.38 -65.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832363727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.086 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds