Wall clock time and date at job start Mon Mar 30 2020 07:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00316 * 2 1 4 4 C 1.38835 * 119.96017 * 0.02562 * 3 2 1 5 5 C 1.38479 * 120.23112 * 179.97438 * 4 3 2 6 6 F 1.35107 * 119.91287 * 179.97438 * 5 4 3 7 7 C 1.38215 * 120.16907 * 0.02562 * 5 4 3 8 8 C 1.39658 * 119.92363 * 0.02562 * 7 5 4 9 9 C 1.47496 * 120.11734 * 180.02562 * 8 7 5 10 10 N 1.29741 * 120.00001 * 359.97438 * 9 8 7 11 11 N 1.40105 * 120.00266 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00090 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47579 * 330.00463 * 12 11 10 14 14 C 1.53005 * 109.46840 * 90.00141 * 12 11 10 15 15 C 1.50697 * 109.47253 * 209.99886 * 12 11 10 16 16 H 1.08004 * 119.99710 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00476 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99693 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00273 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47567 * 59.99419 * 19 17 15 21 21 H 1.48499 * 109.47121 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47017 * 299.99480 * 19 17 15 23 23 C 1.38435 * 119.96930 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47361 * 300.00104 * 1 2 3 25 25 H 1.09005 * 109.47154 * 60.00256 * 1 2 3 26 26 H 1.08996 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.88583 * 359.71590 * 4 3 2 28 28 H 1.07995 * 120.04094 * 180.02562 * 7 5 4 29 29 H 1.07998 * 120.00034 * 179.97438 * 9 8 7 30 30 H 0.96996 * 119.99734 * 359.97438 * 11 10 9 31 31 H 1.08996 * 109.47603 * 60.00190 * 14 12 11 32 32 H 1.09004 * 109.46589 * 180.02562 * 14 12 11 33 33 H 1.08995 * 109.46912 * 299.99579 * 14 12 11 34 34 H 0.96998 * 120.00135 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.07565 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2891 2.3747 0.0005 5 6 1.9121 3.6115 0.0011 6 9 1.1692 4.7400 0.0011 7 6 3.2917 3.6944 0.0005 8 6 4.0597 2.5279 -0.0011 9 6 5.5323 2.6113 -0.0011 10 7 6.1164 3.7698 -0.0001 11 7 7.5152 3.8492 -0.0006 12 6 8.1747 5.1573 0.0011 13 1 7.5433 5.8832 -0.5112 14 6 8.4050 5.6104 1.4443 15 6 9.4992 5.0530 -0.7101 16 1 9.8177 4.1070 -1.1225 17 6 10.3045 6.1652 -0.8343 18 7 9.9165 7.3173 -0.3325 19 14 11.9460 6.0361 -1.7164 20 1 11.7220 5.5971 -3.1173 21 1 12.6146 7.3621 -1.7146 22 1 12.8061 5.0466 -1.0191 23 6 3.4285 1.2825 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2108 2.3154 -0.0037 28 1 3.7753 4.6600 0.0014 29 1 6.1243 1.7081 -0.0019 30 1 8.0469 3.0379 -0.0014 31 1 9.0363 4.8846 1.9567 32 1 8.8953 6.5839 1.4455 33 1 7.4470 5.6858 1.9586 34 1 10.4831 8.0997 -0.4196 35 1 4.0174 0.3771 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834965525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:08 Heat of formation + Delta-G solvation = -36.276542 kcal Electronic energy + Delta-G solvation = -18833.632390 eV Core-core repulsion = 15553.780904 eV Total energy + Delta-G solvation = -3279.851486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.95817 -41.02364 -38.80919 -37.74138 -35.79589 -33.49277 -31.77442 -31.17411 -28.83881 -28.10123 -27.29744 -24.59886 -23.60648 -22.31911 -21.52517 -19.34316 -18.60050 -18.01818 -17.36340 -17.16922 -16.94232 -16.90788 -16.32829 -16.32277 -15.77346 -15.40638 -14.79090 -14.53218 -14.35006 -13.90334 -13.66206 -13.24386 -13.16616 -12.91668 -12.77135 -12.62650 -12.46999 -12.25708 -12.22569 -12.09852 -11.76910 -11.20244 -10.96215 -10.59214 -10.08708 -9.30212 -8.51741 -8.18386 -6.35901 -0.20159 0.23906 1.43480 1.45343 1.53147 1.59127 2.00562 2.33818 2.49342 2.74335 3.10770 3.16369 3.68281 3.95736 3.99372 4.23297 4.31335 4.40972 4.45483 4.52227 4.73331 4.79876 4.96132 4.99027 5.05202 5.08438 5.12467 5.21664 5.40828 5.54532 5.64518 5.76697 5.86403 6.14897 6.35043 6.37474 6.81870 7.35574 7.70596 8.86524 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.003295 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.324375 B = 8496.944579 C = 8958.351800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.158 3.842 4 C -0.239 4.239 5 C 0.126 3.874 6 F -0.144 7.144 7 C -0.186 4.186 8 C 0.042 3.958 9 C 0.018 3.982 10 N -0.233 5.233 11 N -0.633 5.633 12 C 0.306 3.694 13 H 0.002 0.998 14 C -0.137 4.137 15 C -0.550 4.550 16 H 0.064 0.936 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.267 1.267 23 C -0.144 4.144 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.164 0.836 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.377 0.623 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.267 0.733 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 -14.485 1.051 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.112 3.888 4 C -0.260 4.260 5 C 0.107 3.893 6 F -0.123 7.123 7 C -0.208 4.208 8 C 0.040 3.960 9 C -0.191 4.191 10 N -0.043 5.043 11 N -0.370 5.370 12 C 0.202 3.798 13 H 0.019 0.981 14 C -0.197 4.197 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.165 4.165 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.182 0.818 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.215 0.785 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.254 -13.251 1.074 21.781 hybrid contribution 1.015 -0.189 -0.341 1.088 sum -16.238 -13.440 0.732 21.092 Atomic orbital electron populations 1.23441 0.76103 1.06012 1.02504 1.86101 1.23689 1.25314 1.88207 1.18454 0.91638 0.84220 0.94496 1.21319 1.02223 0.90128 1.12315 1.17328 0.88450 0.82189 1.01336 1.91485 1.76694 1.50211 1.93889 1.21230 0.92122 1.00225 1.07211 1.17882 0.90063 0.91925 0.96179 1.23880 0.93279 0.94182 1.07797 1.73951 0.96826 1.27346 1.06193 1.48591 0.97349 1.08719 1.82302 1.18154 0.90035 0.78956 0.92638 0.98054 1.22033 0.97898 1.02127 0.97625 1.21501 1.03452 0.96657 1.37262 0.91812 1.25720 1.01882 0.94573 0.95988 1.70011 1.39067 1.00736 1.45498 0.85416 0.78692 0.77474 0.78867 1.19782 1.20734 1.19143 1.20561 0.91840 0.97659 1.06432 0.91506 0.91550 0.85772 0.81850 0.85884 0.84688 0.78499 0.94860 0.91228 0.96353 0.92365 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.57 10.49 -92.43 -0.97 -6.54 16 3 C 0.16 3.29 6.68 22.46 0.15 3.44 16 4 C -0.24 -5.02 9.01 22.47 0.20 -4.81 16 5 C 0.13 3.39 7.29 22.32 0.16 3.55 16 6 F -0.14 -4.04 17.26 44.97 0.78 -3.27 16 7 C -0.19 -5.73 9.55 22.61 0.22 -5.51 16 8 C 0.04 1.19 5.87 -20.16 -0.12 1.07 16 9 C 0.02 0.56 10.75 87.44 0.94 1.50 16 10 N -0.23 -9.48 10.61 -52.16 -0.55 -10.03 16 11 N -0.63 -28.05 6.10 -172.53 -1.05 -29.10 16 12 C 0.31 15.99 3.23 44.25 0.14 16.13 16 13 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 14 C -0.14 -6.93 9.29 71.98 0.67 -6.26 16 15 C -0.55 -29.75 8.74 25.60 0.22 -29.53 16 16 H 0.06 3.31 7.79 -2.91 -0.02 3.29 16 17 C 0.02 1.01 5.30 84.65 0.45 1.46 16 18 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 19 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C -0.14 -3.24 9.72 22.65 0.22 -3.02 16 24 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 25 H 0.07 0.51 7.65 -2.38 -0.02 0.49 16 26 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.16 2.45 6.28 -2.91 -0.02 2.43 16 28 H 0.12 4.33 7.55 -2.91 -0.02 4.30 16 29 H 0.14 3.52 8.02 -2.91 -0.02 3.50 16 30 H 0.38 15.11 8.58 -213.32 -1.83 13.28 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -62.88 310.41 4.12 -58.76 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.72 Total: 18.22 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.37 Total: -20.73 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.36 Total: -90.82 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.97 Total: -6.54 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -62.88 4.12 -58.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834965525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.483 kcal (2) G-P(sol) polarization free energy of solvation -62.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds