Wall clock time and date at job start Mon Mar 30 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38139 * 120.01301 * 2 1 4 4 C 1.38227 * 120.09682 * 180.25584 * 3 2 1 5 5 C 1.38538 * 120.12720 * 359.74193 * 4 3 2 6 6 F 1.35093 * 119.98787 * 179.97438 * 5 4 3 7 7 C 1.38306 * 120.02045 * 359.97438 * 5 4 3 8 8 C 1.38894 * 119.90187 * 0.02562 * 7 5 4 9 9 N 1.39665 * 120.05835 * 179.97438 * 8 7 5 10 10 N 1.40096 * 120.00473 * 359.97438 * 9 8 7 11 11 C 1.34770 * 120.00427 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99833 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00307 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47034 * 60.00225 * 13 11 10 15 15 C 1.53005 * 109.47012 * 299.99943 * 13 11 10 16 16 C 1.50704 * 109.47187 * 180.02562 * 13 11 10 17 17 H 1.07994 * 120.00471 * 35.09752 * 16 13 11 18 18 C 1.37881 * 119.99643 * 215.10918 * 16 13 11 19 19 N 1.31516 * 119.99696 * 184.90661 * 18 16 13 20 20 Si 1.86799 * 120.00269 * 4.89906 * 18 16 13 21 21 H 1.48496 * 109.46932 * 84.82446 * 20 18 16 22 22 H 1.48491 * 109.47212 * 204.82741 * 20 18 16 23 23 H 1.48507 * 109.46996 * 324.82915 * 20 18 16 24 24 H 1.08997 * 109.46885 * 270.28045 * 1 2 3 25 25 H 1.09003 * 109.47059 * 30.27632 * 1 2 3 26 26 H 1.09005 * 109.47248 * 150.27826 * 1 2 3 27 27 H 1.08000 * 119.94681 * 359.97305 * 3 2 1 28 28 H 1.08000 * 119.93620 * 179.72402 * 4 3 2 29 29 H 1.08000 * 120.05096 * 180.02562 * 7 5 4 30 30 H 0.97000 * 119.99448 * 179.97438 * 9 8 7 31 31 H 0.97000 * 120.00079 * 0.02562 * 10 9 8 32 32 H 1.08999 * 109.47215 * 295.07447 * 15 13 11 33 33 H 1.08996 * 109.46878 * 175.07571 * 15 13 11 34 34 H 1.08997 * 109.46791 * 55.07504 * 15 13 11 35 35 H 0.97001 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1982 -0.0053 5 6 4.2774 0.0010 -0.0053 6 9 5.6283 0.0062 -0.0111 7 6 3.5907 -1.1996 0.0006 8 6 2.2018 -1.2028 0.0060 9 7 1.5050 -2.4133 0.0114 10 7 2.2070 -3.6257 0.0109 11 6 1.5347 -4.7937 0.0156 12 8 0.3219 -4.7952 0.0198 13 6 2.2899 -6.0979 0.0157 14 1 2.9196 -6.1530 0.9036 15 6 3.1653 -6.1803 -1.2365 16 6 1.3120 -7.2446 0.0208 17 1 0.3777 -7.1600 -0.5142 18 6 1.6101 -8.4017 0.7088 19 7 0.8028 -9.4372 0.6347 20 14 3.1607 -8.4986 1.7459 21 1 2.8921 -7.9320 3.0920 22 1 3.5786 -9.9171 1.8802 23 1 4.2443 -7.7233 1.0898 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6573 2.1311 -0.0004 28 1 4.1178 2.1349 -0.0098 29 1 4.1337 -2.1332 0.0010 30 1 0.5351 -2.4144 0.0155 31 1 3.1770 -3.6245 0.0072 32 1 2.5305 -6.2134 -2.1220 33 1 3.7764 -7.0818 -1.1937 34 1 3.8123 -5.3046 -1.2857 35 1 1.0127 -10.2514 1.1183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855370947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:21 Heat of formation + Delta-G solvation = -26.483770 kcal Electronic energy + Delta-G solvation = -19606.585358 eV Core-core repulsion = 16327.158519 eV Total energy + Delta-G solvation = -3279.426840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.95274 -39.99718 -38.77874 -35.60113 -33.85494 -32.79179 -31.85297 -30.97492 -28.51129 -26.52713 -25.38415 -23.47223 -21.99804 -21.80318 -19.85272 -18.32117 -17.54919 -17.01916 -16.13756 -15.76149 -15.67878 -15.65586 -14.83532 -14.61488 -14.45846 -13.92053 -13.77742 -13.54570 -13.21616 -12.73603 -12.48848 -12.29661 -12.26646 -11.73504 -11.62700 -11.33649 -11.26536 -11.11578 -10.84855 -10.42704 -9.92971 -9.33989 -9.23652 -9.04806 -8.74566 -8.67192 -7.17376 -6.17733 -4.18641 1.07478 1.31568 2.19993 3.17490 3.23394 3.27159 3.34557 3.56607 4.06339 4.28571 4.54406 4.61190 4.77190 4.91760 5.09327 5.17579 5.35176 5.47965 5.50921 5.65364 5.73720 5.89585 6.00613 6.04693 6.12323 6.20633 6.33449 6.36217 6.63092 6.71069 6.99474 7.09899 7.38908 7.65675 7.94732 8.39509 8.92296 8.97204 9.40094 10.94931 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.004635 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.941667 B = 6038.960312 C = 6768.912221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.173 4.173 3 C -0.038 4.038 4 C -0.219 4.219 5 C 0.148 3.852 6 F -0.141 7.141 7 C -0.242 4.242 8 C 0.254 3.746 9 N -0.534 5.534 10 N -0.546 5.546 11 C 0.519 3.481 12 O -0.527 6.527 13 C 0.009 3.991 14 H 0.059 0.941 15 C -0.137 4.137 16 C -0.499 4.499 17 H 0.088 0.912 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.871 3.129 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.434 0.566 31 H 0.415 0.585 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 19.854 -0.990 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C -0.057 4.057 4 C -0.240 4.240 5 C 0.128 3.872 6 F -0.119 7.119 7 C -0.267 4.267 8 C 0.146 3.854 9 N -0.256 5.256 10 N -0.296 5.296 11 C 0.308 3.692 12 O -0.399 6.399 13 C -0.014 4.014 14 H 0.077 0.923 15 C -0.195 4.195 16 C -0.537 4.537 17 H 0.106 0.894 18 C -0.128 4.128 19 N -0.526 5.526 20 Si 0.697 3.303 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.188 1.188 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.279 0.721 31 H 0.257 0.743 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.214 19.367 -0.925 20.078 hybrid contribution 1.237 -0.193 0.647 1.410 sum 6.452 19.174 -0.278 20.232 Atomic orbital electron populations 1.20624 0.90699 1.02762 1.02413 1.19280 0.96288 0.90927 1.11451 1.20560 0.92826 0.96914 0.95402 1.20797 0.94782 0.96669 1.11764 1.17283 0.76382 0.93939 0.99600 1.91486 1.29321 1.97451 1.93679 1.20279 0.92768 0.97790 1.15820 1.17277 0.90447 0.84461 0.93184 1.43675 1.07011 0.94626 1.80333 1.45894 1.08100 0.96253 1.79351 1.22442 0.89354 0.83293 0.74114 1.90603 1.14389 1.86604 1.48291 1.19347 0.96137 0.89391 0.96558 0.92273 1.22023 0.98517 0.99811 0.99167 1.20687 1.04688 0.95347 1.32945 0.89418 1.25020 0.96436 0.95466 0.95891 1.69870 1.37236 1.03512 1.41965 0.86969 0.84088 0.77723 0.81482 1.19964 1.21012 1.18804 0.91189 0.91059 0.91960 0.84992 0.85216 0.85239 0.72095 0.74329 0.92560 0.92164 0.95485 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.57 36.01 0.34 -0.64 16 2 C -0.17 -1.90 5.90 -104.41 -0.62 -2.52 16 3 C -0.04 -0.36 9.69 -39.62 -0.38 -0.74 16 4 C -0.22 -2.25 10.02 -39.47 -0.40 -2.64 16 5 C 0.15 1.79 7.30 -39.45 -0.29 1.50 16 6 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 7 C -0.24 -3.08 9.46 -39.31 -0.37 -3.45 16 8 C 0.25 3.31 6.70 -83.80 -0.56 2.75 16 9 N -0.53 -7.98 6.35 32.41 0.21 -7.78 16 10 N -0.55 -9.03 6.08 31.22 0.19 -8.84 16 11 C 0.52 10.98 7.27 -10.99 -0.08 10.90 16 12 O -0.53 -13.06 15.61 5.55 0.09 -12.98 16 13 C 0.01 0.20 2.30 -92.92 -0.21 -0.01 16 14 H 0.06 1.26 5.29 -51.93 -0.27 0.99 16 15 C -0.14 -2.59 9.12 37.16 0.34 -2.25 16 16 C -0.50 -13.77 8.36 -34.44 -0.29 -14.06 16 17 H 0.09 2.76 7.61 -52.49 -0.40 2.36 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 20 Si 0.87 20.16 26.99 -169.99 -4.59 15.57 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -5.57 6.82 56.52 0.39 -5.18 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.06 0.62 6.55 -51.93 -0.34 0.27 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.55 6.20 -52.49 -0.33 1.23 16 30 H 0.43 6.56 6.00 -182.60 -1.09 5.46 16 31 H 0.42 5.82 5.96 -182.60 -1.09 4.73 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.40 7.43 -51.93 -0.39 0.02 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -31.63 300.40 -6.97 -38.60 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.59 Total: 7.62 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.61 Total: -9.18 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 1.17 Total: -42.43 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.63 -6.97 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855370947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.119 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds