Wall clock time and date at job start Mon Mar 30 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38139 * 120.01301 * 2 1 4 4 C 1.38227 * 120.09682 * 180.25584 * 3 2 1 5 5 C 1.38538 * 120.12720 * 359.74193 * 4 3 2 6 6 F 1.35093 * 119.98787 * 179.97438 * 5 4 3 7 7 C 1.38306 * 120.02045 * 359.97438 * 5 4 3 8 8 C 1.38894 * 119.90187 * 0.02562 * 7 5 4 9 9 N 1.39665 * 120.05835 * 179.97438 * 8 7 5 10 10 N 1.40096 * 120.00473 * 359.97438 * 9 8 7 11 11 C 1.34770 * 120.00427 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99833 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00307 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47034 * 60.00225 * 13 11 10 15 15 C 1.53005 * 109.47012 * 299.99943 * 13 11 10 16 16 C 1.50704 * 109.47187 * 180.02562 * 13 11 10 17 17 H 1.07994 * 120.00471 * 35.09752 * 16 13 11 18 18 C 1.37881 * 119.99643 * 215.10918 * 16 13 11 19 19 N 1.31516 * 119.99696 * 184.90661 * 18 16 13 20 20 Si 1.86799 * 120.00269 * 4.89906 * 18 16 13 21 21 H 1.48496 * 109.46932 * 84.82446 * 20 18 16 22 22 H 1.48491 * 109.47212 * 204.82741 * 20 18 16 23 23 H 1.48507 * 109.46996 * 324.82915 * 20 18 16 24 24 H 1.08997 * 109.46885 * 270.28045 * 1 2 3 25 25 H 1.09003 * 109.47059 * 30.27632 * 1 2 3 26 26 H 1.09005 * 109.47248 * 150.27826 * 1 2 3 27 27 H 1.08000 * 119.94681 * 359.97305 * 3 2 1 28 28 H 1.08000 * 119.93620 * 179.72402 * 4 3 2 29 29 H 1.08000 * 120.05096 * 180.02562 * 7 5 4 30 30 H 0.97000 * 119.99448 * 179.97438 * 9 8 7 31 31 H 0.97000 * 120.00079 * 0.02562 * 10 9 8 32 32 H 1.08999 * 109.47215 * 295.07447 * 15 13 11 33 33 H 1.08996 * 109.46878 * 175.07571 * 15 13 11 34 34 H 1.08997 * 109.46791 * 55.07504 * 15 13 11 35 35 H 0.97001 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1982 -0.0053 5 6 4.2774 0.0010 -0.0053 6 9 5.6283 0.0062 -0.0111 7 6 3.5907 -1.1996 0.0006 8 6 2.2018 -1.2028 0.0060 9 7 1.5050 -2.4133 0.0114 10 7 2.2070 -3.6257 0.0109 11 6 1.5347 -4.7937 0.0156 12 8 0.3219 -4.7952 0.0198 13 6 2.2899 -6.0979 0.0157 14 1 2.9196 -6.1530 0.9036 15 6 3.1653 -6.1803 -1.2365 16 6 1.3120 -7.2446 0.0208 17 1 0.3777 -7.1600 -0.5142 18 6 1.6101 -8.4017 0.7088 19 7 0.8028 -9.4372 0.6347 20 14 3.1607 -8.4986 1.7459 21 1 2.8921 -7.9320 3.0920 22 1 3.5786 -9.9171 1.8802 23 1 4.2443 -7.7233 1.0898 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6573 2.1311 -0.0004 28 1 4.1178 2.1349 -0.0098 29 1 4.1337 -2.1332 0.0010 30 1 0.5351 -2.4144 0.0155 31 1 3.1770 -3.6245 0.0072 32 1 2.5305 -6.2134 -2.1220 33 1 3.7764 -7.0818 -1.1937 34 1 3.8123 -5.3046 -1.2857 35 1 1.0127 -10.2514 1.1183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855370947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:21 Heat of formation + Delta-G solvation = -47.610913 kcal Electronic energy + Delta-G solvation = -19607.501500 eV Core-core repulsion = 16327.158519 eV Total energy + Delta-G solvation = -3280.342981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.87409 -41.21666 -40.09758 -36.87362 -35.73571 -33.93994 -33.35595 -32.30956 -29.59343 -27.37480 -27.25881 -24.91739 -23.19102 -22.80664 -21.27110 -19.53796 -19.18939 -18.55380 -17.53029 -16.86239 -16.61579 -16.57353 -16.33294 -16.16081 -15.83088 -15.23382 -14.81856 -14.55018 -14.47193 -14.28111 -14.14267 -13.45710 -13.17580 -13.05065 -12.98329 -12.62888 -12.54274 -12.30288 -12.18159 -12.13033 -11.77736 -11.32125 -10.81246 -10.70854 -10.39644 -9.63914 -8.30058 -8.29317 -6.37875 0.20218 0.41963 0.94475 1.36613 1.39502 1.48777 1.71374 2.33697 2.66365 2.96246 3.09991 3.52381 3.74495 3.95080 3.98495 4.16001 4.33138 4.37933 4.48192 4.65367 4.68678 4.74483 4.81914 4.99137 5.04652 5.07177 5.28190 5.29193 5.40341 5.50267 5.53248 5.64841 5.97882 6.19948 6.39718 6.63534 6.76323 7.23708 7.41651 8.87495 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.004635 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.941667 B = 6038.960312 C = 6768.912221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.170 4.170 3 C -0.033 4.033 4 C -0.207 4.207 5 C 0.129 3.871 6 F -0.146 7.146 7 C -0.251 4.251 8 C 0.231 3.769 9 N -0.544 5.544 10 N -0.525 5.525 11 C 0.520 3.480 12 O -0.577 6.577 13 C 0.005 3.995 14 H 0.078 0.922 15 C -0.132 4.132 16 C -0.509 4.509 17 H 0.026 0.974 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.943 3.057 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.221 1.221 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.169 0.831 28 H 0.154 0.846 29 H 0.132 0.868 30 H 0.431 0.569 31 H 0.430 0.570 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 22.985 -0.454 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C -0.051 4.051 4 C -0.228 4.228 5 C 0.109 3.891 6 F -0.125 7.125 7 C -0.275 4.275 8 C 0.127 3.873 9 N -0.269 5.269 10 N -0.274 5.274 11 C 0.308 3.692 12 O -0.453 6.453 13 C -0.018 4.018 14 H 0.096 0.904 15 C -0.190 4.190 16 C -0.547 4.547 17 H 0.045 0.955 18 C -0.187 4.187 19 N -0.586 5.586 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.143 1.143 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.186 0.814 28 H 0.172 0.828 29 H 0.150 0.850 30 H 0.275 0.725 31 H 0.274 0.726 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.904 22.587 -0.410 23.933 hybrid contribution 0.367 -0.947 0.418 1.099 sum 8.270 21.640 0.008 23.166 Atomic orbital electron populations 1.20692 0.89588 1.03359 1.02997 1.19624 0.97292 0.90706 1.09993 1.20974 0.92654 0.97681 0.93821 1.21181 0.95276 0.96958 1.09384 1.17486 0.76329 0.94485 1.00766 1.91473 1.29676 1.97488 1.93844 1.20402 0.92804 0.98436 1.15861 1.17505 0.90714 0.84217 0.94908 1.43682 1.06841 0.94119 1.82284 1.45264 1.08567 0.96395 1.77130 1.21982 0.88512 0.84449 0.74248 1.90585 1.16335 1.87401 1.50981 1.19292 0.95452 0.88088 0.98939 0.90416 1.21910 0.98294 1.02190 0.96561 1.20803 1.03738 0.97903 1.32276 0.95542 1.26039 1.00744 0.94595 0.97275 1.70057 1.40259 1.04513 1.43818 0.85815 0.80050 0.78288 0.79374 1.19486 1.21034 1.14325 0.90605 0.88602 0.93212 0.81385 0.82823 0.85020 0.72463 0.72602 0.93996 0.91746 0.90875 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.57 71.24 0.68 -1.07 16 2 C -0.17 -3.28 5.90 -19.73 -0.12 -3.40 16 3 C -0.03 -0.49 9.69 22.24 0.22 -0.27 16 4 C -0.21 -3.47 10.02 22.34 0.22 -3.25 16 5 C 0.13 2.79 7.30 22.36 0.16 2.96 16 6 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 7 C -0.25 -5.87 9.46 22.44 0.21 -5.66 16 8 C 0.23 5.61 6.70 38.21 0.26 5.87 16 9 N -0.54 -15.86 6.35 -51.39 -0.33 -16.18 16 10 N -0.52 -16.78 6.08 -173.54 -1.05 -17.83 16 11 C 0.52 22.12 7.27 87.66 0.64 22.75 16 12 O -0.58 -29.87 15.61 -3.04 -0.05 -29.92 16 13 C 0.01 0.24 2.30 -12.28 -0.03 0.21 16 14 H 0.08 3.10 5.29 -2.39 -0.01 3.09 16 15 C -0.13 -4.72 9.12 71.98 0.66 -4.06 16 16 C -0.51 -29.29 8.36 25.60 0.21 -29.08 16 17 H 0.03 1.79 7.61 -2.91 -0.02 1.77 16 18 C 0.01 0.62 5.47 84.66 0.46 1.08 16 19 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 20 Si 0.94 41.03 26.99 68.60 1.85 42.89 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.22 -8.06 6.82 99.48 0.68 -7.38 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 26 H 0.05 0.94 6.55 -2.38 -0.02 0.92 16 27 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.13 2.88 6.20 -2.91 -0.02 2.86 16 30 H 0.43 13.12 6.00 -213.32 -1.28 11.84 16 31 H 0.43 11.02 5.96 -213.32 -1.27 9.75 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 1.94 7.43 -2.39 -0.02 1.92 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.93 300.40 3.64 -70.30 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -1.44 Total: 26.24 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.58 Total: -13.91 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -1.08 Total: -93.02 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.85 Total: 42.89 kcal Total: -73.93 3.64 -70.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855370947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.684 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds