Wall clock time and date at job start Mon Mar 30 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.01699 * 2 1 4 4 C 1.38225 * 120.10094 * 180.24936 * 3 2 1 5 5 C 1.38532 * 120.12290 * 359.75406 * 4 3 2 6 6 F 1.35105 * 119.99089 * 179.97438 * 5 4 3 7 7 C 1.38311 * 120.02667 * 359.97438 * 5 4 3 8 8 C 1.38889 * 119.89861 * 0.02562 * 7 5 4 9 9 N 1.39665 * 120.06356 * 179.97438 * 8 7 5 10 10 N 1.40100 * 119.99645 * 0.02562 * 9 8 7 11 11 C 1.34784 * 119.99901 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99649 * 359.72539 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72421 * 11 10 9 14 14 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 15 15 C 1.53000 * 109.47174 * 60.00061 * 13 11 10 16 16 C 1.50698 * 109.47166 * 179.97438 * 13 11 10 17 17 H 1.08001 * 120.00262 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00084 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00095 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99895 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47258 * 60.00121 * 20 18 16 22 22 H 1.48501 * 109.47447 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47259 * 300.00100 * 20 18 16 24 24 H 1.08998 * 109.47280 * 270.27423 * 1 2 3 25 25 H 1.09007 * 109.46709 * 30.27323 * 1 2 3 26 26 H 1.08999 * 109.47653 * 150.27340 * 1 2 3 27 27 H 1.07998 * 119.94704 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.93671 * 179.72274 * 4 3 2 29 29 H 1.07994 * 120.05325 * 180.02562 * 7 5 4 30 30 H 0.97004 * 120.00299 * 179.97438 * 9 8 7 31 31 H 0.97000 * 120.00702 * 359.72239 * 10 9 8 32 32 H 1.08995 * 109.47095 * 299.99934 * 15 13 11 33 33 H 1.09000 * 109.47156 * 60.00213 * 15 13 11 34 34 H 1.08998 * 109.47223 * 179.97438 * 15 13 11 35 35 H 0.97003 * 119.99629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1961 0.0000 4 6 3.5803 1.1981 -0.0052 5 6 4.2772 0.0009 -0.0053 6 9 5.6283 0.0060 -0.0109 7 6 3.5906 -1.1997 0.0004 8 6 2.2017 -1.2029 0.0056 9 7 1.5049 -2.4133 0.0108 10 7 2.2069 -3.6257 0.0112 11 6 1.5345 -4.7938 0.0168 12 8 0.3217 -4.7952 0.0264 13 6 2.2895 -6.0979 0.0110 14 1 2.9091 -6.1551 -0.8839 15 6 3.1791 -6.1777 1.2532 16 6 1.3117 -7.2446 0.0196 17 1 0.2497 -7.0486 0.0279 18 6 1.7729 -8.5439 0.0157 19 7 3.0661 -8.7826 0.0050 20 14 0.5608 -9.9652 0.0256 21 1 -0.3030 -9.8876 -1.1798 22 1 1.3048 -11.2504 0.0200 23 1 -0.2831 -9.8877 1.2452 24 1 -0.3634 0.0049 1.0276 25 1 -0.3633 0.8876 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6574 2.1310 -0.0004 28 1 4.1178 2.1348 -0.0097 29 1 4.1335 -2.1333 0.0007 30 1 0.5348 -2.4145 0.0148 31 1 3.1769 -3.6246 0.0039 32 1 3.8864 -5.3484 1.2475 33 1 2.5595 -6.1206 2.1481 34 1 3.7249 -7.1211 1.2493 35 1 3.3905 -9.6968 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855370948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:24 Heat of formation + Delta-G solvation = -28.831066 kcal Electronic energy + Delta-G solvation = -19549.153016 eV Core-core repulsion = 16269.624390 eV Total energy + Delta-G solvation = -3279.528626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.89469 -39.93642 -38.69756 -35.54883 -33.90559 -32.75583 -31.65857 -30.41128 -28.35877 -26.48258 -25.24703 -23.39760 -22.01890 -21.76721 -19.89228 -18.31818 -17.40136 -16.27347 -16.12141 -15.67827 -15.62411 -15.58369 -14.86499 -14.56024 -14.48641 -13.86520 -13.68715 -13.48787 -13.14151 -12.76391 -12.33613 -12.25689 -11.71995 -11.67466 -11.29543 -11.15468 -11.09525 -10.84270 -10.78554 -10.38917 -10.07380 -9.21058 -9.11594 -8.94934 -8.69706 -8.45860 -7.12092 -6.12807 -4.17186 1.12112 1.36155 2.28021 3.31198 3.34320 3.39638 3.40931 3.62305 4.12089 4.38140 4.60151 4.68595 4.81045 4.96694 5.20572 5.20874 5.39837 5.51700 5.54747 5.76988 5.81271 5.95373 6.08109 6.17323 6.37418 6.47903 6.67246 6.73647 6.76683 7.08538 7.32922 7.60875 7.68212 7.92505 7.99503 8.22671 8.90828 9.00668 9.48755 10.94724 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.004184 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.290868 B = 6690.107989 C = 7482.691780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.175 4.175 3 C -0.038 4.038 4 C -0.219 4.219 5 C 0.149 3.851 6 F -0.140 7.140 7 C -0.241 4.241 8 C 0.255 3.745 9 N -0.534 5.534 10 N -0.543 5.543 11 C 0.521 3.479 12 O -0.543 6.543 13 C 0.043 3.957 14 H 0.059 0.941 15 C -0.136 4.136 16 C -0.506 4.506 17 H 0.075 0.925 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.433 0.567 31 H 0.418 0.582 32 H 0.013 0.987 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 17.843 0.253 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.181 4.181 3 C -0.057 4.057 4 C -0.241 4.241 5 C 0.129 3.871 6 F -0.119 7.119 7 C -0.265 4.265 8 C 0.146 3.854 9 N -0.257 5.257 10 N -0.293 5.293 11 C 0.311 3.689 12 O -0.417 6.417 13 C 0.020 3.980 14 H 0.076 0.924 15 C -0.194 4.194 16 C -0.544 4.544 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.278 0.722 31 H 0.259 0.741 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.501 17.413 0.259 17.422 hybrid contribution -0.081 -0.769 0.003 0.773 sum 0.419 16.644 0.262 16.651 Atomic orbital electron populations 1.20613 0.90770 1.02699 1.02345 1.19268 0.96236 0.90948 1.11634 1.20545 0.92830 0.96874 0.95486 1.20790 0.94773 0.96662 1.11846 1.17287 0.76405 0.93922 0.99531 1.91491 1.29293 1.97449 1.93665 1.20304 0.92779 0.97874 1.15592 1.17275 0.90463 0.84440 0.93176 1.43642 1.06973 0.94738 1.80298 1.45826 1.08218 0.96137 1.79134 1.22578 0.89170 0.83814 0.73328 1.90551 1.14734 1.86883 1.49548 1.18893 0.95450 0.86268 0.97373 0.92382 1.21814 0.98223 1.02234 0.97161 1.21041 0.93487 0.88981 1.50902 0.90670 1.24942 0.95438 0.98887 0.94802 1.69851 1.12311 1.20631 1.50522 0.86447 0.80818 0.80661 0.78878 1.20119 1.21269 1.20129 0.91247 0.91098 0.92018 0.85038 0.85231 0.85119 0.72200 0.74076 0.96830 0.94644 0.88392 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.57 36.00 0.34 -0.66 16 2 C -0.17 -1.98 5.90 -104.41 -0.62 -2.60 16 3 C -0.04 -0.38 9.69 -39.62 -0.38 -0.76 16 4 C -0.22 -2.35 10.02 -39.48 -0.40 -2.74 16 5 C 0.15 1.88 7.30 -39.45 -0.29 1.59 16 6 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 7 C -0.24 -3.23 9.46 -39.31 -0.37 -3.60 16 8 C 0.25 3.45 6.70 -83.80 -0.56 2.89 16 9 N -0.53 -8.28 6.35 32.41 0.21 -8.08 16 10 N -0.54 -9.48 6.11 31.22 0.19 -9.29 16 11 C 0.52 11.43 7.27 -10.98 -0.08 11.35 16 12 O -0.54 -13.47 15.30 5.56 0.08 -13.39 16 13 C 0.04 1.02 2.64 -92.93 -0.25 0.78 16 14 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 15 C -0.14 -3.00 8.87 37.16 0.33 -2.67 16 16 C -0.51 -13.86 8.37 -34.44 -0.29 -14.14 16 17 H 0.08 2.17 6.75 -52.49 -0.35 1.81 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.13 1.69 6.20 -52.49 -0.33 1.37 16 30 H 0.43 6.71 6.00 -182.59 -1.09 5.62 16 31 H 0.42 6.40 6.02 -182.60 -1.10 5.30 16 32 H 0.01 0.24 7.56 -51.93 -0.39 -0.16 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -29.66 300.37 -7.59 -37.24 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.59 Total: 7.28 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.65 Total: -9.04 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.02 Total: -41.08 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.66 -7.59 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855370948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.412 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds