Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.01699 * 2 1 4 4 C 1.38225 * 120.10094 * 180.24936 * 3 2 1 5 5 C 1.38532 * 120.12290 * 359.75406 * 4 3 2 6 6 F 1.35105 * 119.99089 * 179.97438 * 5 4 3 7 7 C 1.38311 * 120.02667 * 359.97438 * 5 4 3 8 8 C 1.38889 * 119.89861 * 0.02562 * 7 5 4 9 9 N 1.39665 * 120.06356 * 179.97438 * 8 7 5 10 10 N 1.40100 * 119.99645 * 0.02562 * 9 8 7 11 11 C 1.34784 * 119.99901 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99649 * 359.72539 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72421 * 11 10 9 14 14 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 15 15 C 1.53000 * 109.47174 * 60.00061 * 13 11 10 16 16 C 1.50698 * 109.47166 * 179.97438 * 13 11 10 17 17 H 1.08001 * 120.00262 * 0.02562 * 16 13 11 18 18 C 1.37878 * 120.00084 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00095 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99895 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47258 * 60.00121 * 20 18 16 22 22 H 1.48501 * 109.47447 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47259 * 300.00100 * 20 18 16 24 24 H 1.08998 * 109.47280 * 270.27423 * 1 2 3 25 25 H 1.09007 * 109.46709 * 30.27323 * 1 2 3 26 26 H 1.08999 * 109.47653 * 150.27340 * 1 2 3 27 27 H 1.07998 * 119.94704 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.93671 * 179.72274 * 4 3 2 29 29 H 1.07994 * 120.05325 * 180.02562 * 7 5 4 30 30 H 0.97004 * 120.00299 * 179.97438 * 9 8 7 31 31 H 0.97000 * 120.00702 * 359.72239 * 10 9 8 32 32 H 1.08995 * 109.47095 * 299.99934 * 15 13 11 33 33 H 1.09000 * 109.47156 * 60.00213 * 15 13 11 34 34 H 1.08998 * 109.47223 * 179.97438 * 15 13 11 35 35 H 0.97003 * 119.99629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1961 0.0000 4 6 3.5803 1.1981 -0.0052 5 6 4.2772 0.0009 -0.0053 6 9 5.6283 0.0060 -0.0109 7 6 3.5906 -1.1997 0.0004 8 6 2.2017 -1.2029 0.0056 9 7 1.5049 -2.4133 0.0108 10 7 2.2069 -3.6257 0.0112 11 6 1.5345 -4.7938 0.0168 12 8 0.3217 -4.7952 0.0264 13 6 2.2895 -6.0979 0.0110 14 1 2.9091 -6.1551 -0.8839 15 6 3.1791 -6.1777 1.2532 16 6 1.3117 -7.2446 0.0196 17 1 0.2497 -7.0486 0.0279 18 6 1.7729 -8.5439 0.0157 19 7 3.0661 -8.7826 0.0050 20 14 0.5608 -9.9652 0.0256 21 1 -0.3030 -9.8876 -1.1798 22 1 1.3048 -11.2504 0.0200 23 1 -0.2831 -9.8877 1.2452 24 1 -0.3634 0.0049 1.0276 25 1 -0.3633 0.8876 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6574 2.1310 -0.0004 28 1 4.1178 2.1348 -0.0097 29 1 4.1335 -2.1333 0.0007 30 1 0.5348 -2.4145 0.0148 31 1 3.1769 -3.6246 0.0039 32 1 3.8864 -5.3484 1.2475 33 1 2.5595 -6.1206 2.1481 34 1 3.7249 -7.1211 1.2493 35 1 3.3905 -9.6968 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855370948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = -46.408704 kcal Electronic energy + Delta-G solvation = -19549.915240 eV Core-core repulsion = 16269.624390 eV Total energy + Delta-G solvation = -3280.290850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87848 -41.19303 -40.07808 -36.87208 -35.85293 -33.82122 -33.03584 -31.99263 -29.52155 -27.36396 -27.23108 -24.93186 -23.27016 -22.81644 -21.35446 -19.54751 -18.75054 -18.16775 -17.57933 -16.82764 -16.62227 -16.57106 -16.49072 -16.15176 -15.80884 -15.13052 -14.87789 -14.58385 -14.45578 -14.24689 -13.67361 -13.33694 -13.05399 -13.00218 -12.76102 -12.65031 -12.54331 -12.32720 -12.18212 -12.16461 -12.03170 -11.11354 -10.78159 -10.46999 -10.39312 -9.64263 -8.29573 -8.17896 -6.29052 0.19757 0.41676 0.96572 1.42895 1.43512 1.52579 1.73207 2.42405 2.66078 3.03971 3.12466 3.53599 3.74176 3.95156 4.05162 4.17979 4.37984 4.49313 4.67754 4.69590 4.82906 4.85679 4.92024 4.99826 5.05310 5.28340 5.29216 5.40251 5.49798 5.61287 5.70874 5.84429 6.01036 6.15016 6.39518 6.66780 6.79594 7.34712 7.44807 8.87774 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.004184 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.290868 B = 6690.107989 C = 7482.691780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.169 4.169 3 C -0.032 4.032 4 C -0.206 4.206 5 C 0.128 3.872 6 F -0.147 7.147 7 C -0.253 4.253 8 C 0.231 3.769 9 N -0.542 5.542 10 N -0.526 5.526 11 C 0.524 3.476 12 O -0.579 6.579 13 C 0.038 3.962 14 H 0.050 0.950 15 C -0.124 4.124 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.126 0.874 30 H 0.432 0.568 31 H 0.428 0.572 32 H 0.050 0.950 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 20.038 0.366 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.175 4.175 3 C -0.050 4.050 4 C -0.227 4.227 5 C 0.108 3.892 6 F -0.126 7.126 7 C -0.278 4.278 8 C 0.126 3.874 9 N -0.268 5.268 10 N -0.274 5.274 11 C 0.313 3.687 12 O -0.457 6.457 13 C 0.015 3.985 14 H 0.067 0.933 15 C -0.182 4.182 16 C -0.570 4.570 17 H 0.071 0.929 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.200 1.200 23 H -0.201 1.201 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.188 0.812 28 H 0.173 0.827 29 H 0.144 0.856 30 H 0.276 0.724 31 H 0.271 0.729 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.507 19.668 0.371 19.678 hybrid contribution 0.000 -1.251 -0.047 1.252 sum 0.507 18.417 0.324 18.427 Atomic orbital electron populations 1.20692 0.89366 1.03419 1.03070 1.19639 0.97415 0.90554 1.09929 1.20991 0.92580 0.97728 0.93737 1.21186 0.95341 0.96832 1.09356 1.17509 0.76315 0.94503 1.00825 1.91474 1.29748 1.97493 1.93855 1.20402 0.93010 0.98339 1.16008 1.17518 0.90619 0.84329 0.94914 1.43645 1.06801 0.94051 1.82269 1.45267 1.08547 0.96553 1.77053 1.21970 0.88428 0.84589 0.73724 1.90522 1.15956 1.87528 1.51675 1.18781 0.95099 0.86908 0.97690 0.93275 1.21633 0.98171 1.02555 0.95861 1.21199 0.93142 0.90798 1.51833 0.92919 1.25581 0.97004 1.00776 0.94384 1.69932 1.13236 1.21175 1.50445 0.85614 0.79026 0.78387 0.78627 1.20124 1.20024 1.20117 0.90493 0.88493 0.93165 0.81154 0.82707 0.85568 0.72356 0.72871 0.93159 0.95449 0.90551 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.57 71.24 0.68 -1.08 16 2 C -0.17 -3.41 5.90 -19.73 -0.12 -3.53 16 3 C -0.03 -0.50 9.69 22.24 0.22 -0.28 16 4 C -0.21 -3.71 10.02 22.34 0.22 -3.49 16 5 C 0.13 3.03 7.30 22.36 0.16 3.19 16 6 F -0.15 -3.69 17.27 44.97 0.78 -2.92 16 7 C -0.25 -6.58 9.46 22.44 0.21 -6.37 16 8 C 0.23 6.00 6.70 38.21 0.26 6.26 16 9 N -0.54 -16.69 6.35 -51.39 -0.33 -17.02 16 10 N -0.53 -18.44 6.11 -173.53 -1.06 -19.50 16 11 C 0.52 23.44 7.27 87.65 0.64 24.08 16 12 O -0.58 -29.57 15.30 -3.04 -0.05 -29.62 16 13 C 0.04 1.85 2.64 -12.29 -0.03 1.82 16 14 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 15 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 16 C -0.53 -29.90 8.37 25.60 0.21 -29.68 16 17 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 18 C 0.02 1.22 5.30 84.66 0.45 1.67 16 19 N -0.91 -49.85 11.32 21.45 0.24 -49.61 16 20 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.06 8.09 -2.38 -0.02 1.04 16 26 H 0.05 0.95 6.55 -2.39 -0.02 0.93 16 27 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 28 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 29 H 0.13 3.25 6.20 -2.91 -0.02 3.23 16 30 H 0.43 13.44 6.00 -213.32 -1.28 12.16 16 31 H 0.43 13.05 6.02 -213.32 -1.28 11.77 16 32 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 3.74 6.07 -2.39 -0.01 3.73 16 35 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -64.72 300.37 3.73 -60.99 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.42 Total: 23.97 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.54 Total: -12.28 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -1.14 Total: -86.12 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.72 3.73 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855370948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.584 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds