Wall clock time and date at job start Mon Mar 30 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38276 * 119.93883 * 2 1 4 4 C 1.38095 * 120.09790 * 179.74602 * 3 2 1 5 5 C 1.38944 * 119.97607 * 0.49422 * 4 3 2 6 6 N 1.39668 * 120.06097 * 179.76492 * 5 4 3 7 7 N 1.40105 * 119.99955 * 359.72102 * 6 5 4 8 8 C 1.34774 * 119.99846 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00472 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00020 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47318 * 59.99264 * 10 8 7 12 12 C 1.53002 * 109.46925 * 300.00031 * 10 8 7 13 13 C 1.50698 * 109.47294 * 180.02562 * 10 8 7 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 10 8 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 C 1.38847 * 119.87607 * 359.48222 * 5 4 3 22 22 C 1.38340 * 119.90129 * 0.28470 * 21 5 4 23 23 F 1.35099 * 119.98707 * 179.97438 * 22 21 5 24 24 H 1.09004 * 109.46716 * 270.01767 * 1 2 3 25 25 H 1.09000 * 109.47524 * 30.01288 * 1 2 3 26 26 H 1.08999 * 109.47176 * 150.02343 * 1 2 3 27 27 H 1.08005 * 119.94977 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.00729 * 180.25165 * 4 3 2 29 29 H 0.97001 * 120.00568 * 179.72034 * 6 5 4 30 30 H 0.96994 * 120.00397 * 0.02562 * 7 6 5 31 31 H 1.09004 * 109.47059 * 59.99503 * 12 10 8 32 32 H 1.08992 * 109.47060 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.46930 * 299.99901 * 12 10 8 34 34 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.04486 * 180.25476 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5780 1.2021 0.0053 5 6 4.2756 0.0005 0.0003 6 7 5.6722 0.0023 0.0006 7 7 6.3711 1.2166 0.0002 8 6 7.7189 1.2183 0.0001 9 8 8.3267 0.1689 0.0008 10 6 8.4707 2.5245 0.0002 11 1 8.2067 3.0956 0.8902 12 6 8.0999 3.3264 -1.2489 13 6 9.9527 2.2510 -0.0007 14 1 10.3140 1.2332 -0.0008 15 6 10.8473 3.3002 -0.0002 16 7 10.4072 4.5396 0.0005 17 14 12.6842 2.9613 -0.0005 18 1 13.0440 2.1836 -1.2134 19 1 13.4251 4.2483 -0.0005 20 1 13.0441 2.1825 1.2116 21 6 3.5816 -1.2021 0.0008 22 6 2.1982 -1.2001 0.0003 23 9 1.5212 -2.3692 0.0003 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5140 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6552 2.1325 0.0004 28 1 4.1155 2.1389 0.0094 29 1 6.1584 -0.8371 0.0012 30 1 5.8851 2.0560 0.0000 31 1 7.0279 3.5241 -1.2488 32 1 8.6433 4.2712 -1.2486 33 1 8.3639 2.7553 -2.1390 34 1 11.0366 5.2776 0.0005 35 1 4.1211 -2.1378 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856232548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:59 Heat of formation + Delta-G solvation = -30.559228 kcal Electronic energy + Delta-G solvation = -19286.157772 eV Core-core repulsion = 16006.554207 eV Total energy + Delta-G solvation = -3279.603565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.96478 -39.79741 -38.67875 -35.77728 -33.91389 -32.76391 -30.91065 -30.59805 -29.27391 -25.77916 -25.25537 -23.44829 -22.60650 -21.27153 -20.01875 -18.38247 -17.24897 -16.32959 -16.26486 -15.75487 -15.73566 -15.50760 -14.83536 -14.51770 -14.38524 -13.74324 -13.51792 -13.36048 -13.20664 -12.98799 -12.55232 -12.44472 -11.73882 -11.63675 -11.28008 -11.11359 -11.02808 -10.83117 -10.79388 -10.39358 -10.08282 -9.15185 -9.11344 -8.95519 -8.81641 -8.46864 -7.10069 -6.14102 -4.18361 1.14408 1.32673 2.25770 3.30655 3.33633 3.39238 3.40581 3.63208 4.21811 4.36418 4.52504 4.65714 4.82145 4.98253 5.18057 5.19625 5.43831 5.48491 5.55663 5.76533 5.88318 5.94568 6.01889 6.16794 6.36076 6.45983 6.65725 6.72327 6.75474 7.08578 7.31955 7.60574 7.67688 7.92107 7.98813 8.22030 8.89930 9.00621 9.47739 10.93474 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048869 B = 0.003518 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.819126 B = 7956.416031 C = 8437.366885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.191 4.191 3 C -0.035 4.035 4 C -0.211 4.211 5 C 0.251 3.749 6 N -0.536 5.536 7 N -0.541 5.541 8 C 0.520 3.480 9 O -0.543 6.543 10 C 0.043 3.957 11 H 0.059 0.941 12 C -0.136 4.136 13 C -0.506 4.506 14 H 0.075 0.925 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.234 4.234 22 C 0.151 3.849 23 F -0.139 7.139 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.432 0.568 30 H 0.418 0.582 31 H 0.013 0.987 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.606 -4.539 -0.281 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.194 4.194 3 C -0.054 4.054 4 C -0.234 4.234 5 C 0.143 3.857 6 N -0.257 5.257 7 N -0.291 5.291 8 C 0.310 3.690 9 O -0.416 6.416 10 C 0.021 3.979 11 H 0.076 0.924 12 C -0.194 4.194 13 C -0.545 4.545 14 H 0.093 0.907 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.259 4.259 22 C 0.131 3.869 23 F -0.118 7.118 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.150 0.850 28 H 0.143 0.857 29 H 0.275 0.725 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.920 -4.981 -0.279 17.640 hybrid contribution 0.843 -0.289 -0.006 0.891 sum -16.078 -5.270 -0.285 16.922 Atomic orbital electron populations 1.20555 0.90581 1.02652 1.02092 1.19598 0.96704 0.91736 1.11394 1.20588 0.92957 0.96927 0.94950 1.20533 0.94495 0.96381 1.12005 1.17418 0.81719 0.93672 0.92855 1.43505 1.00333 1.01374 1.80496 1.45785 1.05091 0.99072 1.79182 1.22580 0.78282 0.94728 0.73386 1.90557 1.67234 1.34377 1.49463 1.18891 0.95208 0.86503 0.97331 0.92374 1.21816 0.96845 1.03614 0.97149 1.21054 0.88401 0.94142 1.50877 0.90664 1.24938 0.99457 0.94873 0.94782 1.69848 1.34765 0.98184 1.50570 0.86448 0.84156 0.77310 0.78907 1.20118 1.21263 1.20104 1.20205 0.92500 0.97664 1.15574 1.17042 0.88912 0.80705 1.00218 1.91462 1.80146 1.46474 1.93689 0.91655 0.91499 0.91844 0.85044 0.85669 0.72506 0.74046 0.96819 0.88404 0.94646 0.92682 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.83 36.00 0.35 -0.51 16 2 C -0.19 -2.08 5.89 -104.52 -0.62 -2.70 16 3 C -0.04 -0.37 9.69 -39.62 -0.38 -0.75 16 4 C -0.21 -2.50 9.48 -39.37 -0.37 -2.87 16 5 C 0.25 3.34 6.72 -83.80 -0.56 2.78 16 6 N -0.54 -8.20 6.45 32.40 0.21 -7.99 16 7 N -0.54 -9.16 6.11 31.22 0.19 -8.97 16 8 C 0.52 11.27 7.27 -10.98 -0.08 11.19 16 9 O -0.54 -13.45 15.30 5.56 0.09 -13.37 16 10 C 0.04 1.02 2.64 -92.92 -0.25 0.77 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.14 -2.94 8.86 37.16 0.33 -2.61 16 13 C -0.51 -13.82 8.37 -34.44 -0.29 -14.10 16 14 H 0.08 2.17 6.75 -52.48 -0.35 1.81 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.23 -2.92 9.87 -39.32 -0.39 -3.31 16 22 C 0.15 1.85 7.24 -39.45 -0.29 1.56 16 23 F -0.14 -1.72 16.47 2.25 0.04 -1.68 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.06 0.54 7.63 -51.93 -0.40 0.14 16 27 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.13 1.35 6.20 -52.48 -0.33 1.03 16 29 H 0.43 6.69 8.01 -182.59 -1.46 5.22 16 30 H 0.42 6.03 6.02 -182.60 -1.10 4.93 16 31 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 32 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -29.56 302.85 -7.96 -37.52 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.01 Total: 6.28 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.63 Total: -9.01 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 1.03 Total: -40.49 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.56 -7.96 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856232548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.956 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds