Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38276 * 119.93883 * 2 1 4 4 C 1.38095 * 120.09790 * 179.74602 * 3 2 1 5 5 C 1.38944 * 119.97607 * 0.49422 * 4 3 2 6 6 N 1.39668 * 120.06097 * 179.76492 * 5 4 3 7 7 N 1.40105 * 119.99955 * 359.72102 * 6 5 4 8 8 C 1.34774 * 119.99846 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00472 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00020 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47318 * 59.99264 * 10 8 7 12 12 C 1.53002 * 109.46925 * 300.00031 * 10 8 7 13 13 C 1.50698 * 109.47294 * 180.02562 * 10 8 7 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 10 8 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 C 1.38847 * 119.87607 * 359.48222 * 5 4 3 22 22 C 1.38340 * 119.90129 * 0.28470 * 21 5 4 23 23 F 1.35099 * 119.98707 * 179.97438 * 22 21 5 24 24 H 1.09004 * 109.46716 * 270.01767 * 1 2 3 25 25 H 1.09000 * 109.47524 * 30.01288 * 1 2 3 26 26 H 1.08999 * 109.47176 * 150.02343 * 1 2 3 27 27 H 1.08005 * 119.94977 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.00729 * 180.25165 * 4 3 2 29 29 H 0.97001 * 120.00568 * 179.72034 * 6 5 4 30 30 H 0.96994 * 120.00397 * 0.02562 * 7 6 5 31 31 H 1.09004 * 109.47059 * 59.99503 * 12 10 8 32 32 H 1.08992 * 109.47060 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.46930 * 299.99901 * 12 10 8 34 34 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.04486 * 180.25476 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5780 1.2021 0.0053 5 6 4.2756 0.0005 0.0003 6 7 5.6722 0.0023 0.0006 7 7 6.3711 1.2166 0.0002 8 6 7.7189 1.2183 0.0001 9 8 8.3267 0.1689 0.0008 10 6 8.4707 2.5245 0.0002 11 1 8.2067 3.0956 0.8902 12 6 8.0999 3.3264 -1.2489 13 6 9.9527 2.2510 -0.0007 14 1 10.3140 1.2332 -0.0008 15 6 10.8473 3.3002 -0.0002 16 7 10.4072 4.5396 0.0005 17 14 12.6842 2.9613 -0.0005 18 1 13.0440 2.1836 -1.2134 19 1 13.4251 4.2483 -0.0005 20 1 13.0441 2.1825 1.2116 21 6 3.5816 -1.2021 0.0008 22 6 2.1982 -1.2001 0.0003 23 9 1.5212 -2.3692 0.0003 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5140 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6552 2.1325 0.0004 28 1 4.1155 2.1389 0.0094 29 1 6.1584 -0.8371 0.0012 30 1 5.8851 2.0560 0.0000 31 1 7.0279 3.5241 -1.2488 32 1 8.6433 4.2712 -1.2486 33 1 8.3639 2.7553 -2.1390 34 1 11.0366 5.2776 0.0005 35 1 4.1211 -2.1378 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856232548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = -48.038364 kcal Electronic energy + Delta-G solvation = -19286.915724 eV Core-core repulsion = 16006.554207 eV Total energy + Delta-G solvation = -3280.361517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.91113 -41.09317 -39.98505 -37.04509 -35.83655 -33.98488 -32.58978 -31.50708 -30.55069 -27.22975 -26.70372 -24.81354 -23.88367 -22.27840 -21.55270 -19.60078 -18.59063 -18.14505 -17.61141 -16.95761 -16.70260 -16.65784 -16.30538 -16.10429 -15.75038 -15.07773 -14.63950 -14.57084 -14.31600 -14.15278 -13.88864 -13.49609 -13.18055 -12.99620 -12.75334 -12.63367 -12.47708 -12.29098 -12.14027 -12.07233 -12.03482 -11.09193 -10.76445 -10.45346 -10.23192 -9.79904 -8.25532 -8.17242 -6.27876 0.21493 0.39170 0.95988 1.43178 1.43514 1.52624 1.76015 2.42963 2.66445 3.13157 3.18410 3.39215 3.79473 3.99727 4.02577 4.19314 4.34683 4.58189 4.71631 4.76077 4.87225 4.89218 4.96038 5.04840 5.09356 5.18287 5.29507 5.43630 5.49406 5.64603 5.72746 5.86631 6.02393 6.17800 6.42329 6.69091 6.80977 7.36810 7.47790 8.88252 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048869 B = 0.003518 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.819126 B = 7956.416031 C = 8437.366885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.184 4.184 3 C -0.032 4.032 4 C -0.213 4.213 5 C 0.231 3.769 6 N -0.545 5.545 7 N -0.520 5.520 8 C 0.522 3.478 9 O -0.583 6.583 10 C 0.039 3.961 11 H 0.053 0.947 12 C -0.124 4.124 13 C -0.534 4.534 14 H 0.050 0.950 15 C 0.024 3.976 16 N -0.908 5.908 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.236 4.236 22 C 0.133 3.867 23 F -0.143 7.143 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.165 0.835 28 H 0.137 0.863 29 H 0.429 0.571 30 H 0.431 0.569 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 -3.700 -0.392 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.187 4.187 3 C -0.050 4.050 4 C -0.236 4.236 5 C 0.127 3.873 6 N -0.269 5.269 7 N -0.269 5.269 8 C 0.312 3.688 9 O -0.460 6.460 10 C 0.017 3.983 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.572 4.572 14 H 0.069 0.931 15 C -0.176 4.176 16 N -0.546 5.546 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.202 1.202 21 C -0.261 4.261 22 C 0.113 3.887 23 F -0.121 7.121 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.183 0.817 28 H 0.154 0.846 29 H 0.271 0.729 30 H 0.276 0.724 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.949 -4.110 -0.391 19.393 hybrid contribution 1.242 -0.572 0.045 1.368 sum -17.707 -4.682 -0.346 18.319 Atomic orbital electron populations 1.20648 0.88673 1.03645 1.03043 1.20011 0.98206 0.91330 1.09161 1.20957 0.92383 0.98078 0.93627 1.20819 0.95404 0.96224 1.11154 1.17575 0.80677 0.94632 0.94435 1.43494 1.00921 1.00086 1.82380 1.45183 1.04051 1.00603 1.77030 1.22015 0.79682 0.93424 0.73726 1.90533 1.68507 1.35247 1.51723 1.18778 0.93901 0.87776 0.97889 0.92959 1.21640 0.99244 1.01739 0.95628 1.21224 0.90964 0.93186 1.51831 0.93144 1.25536 1.02817 0.94797 0.94424 1.69918 1.35790 0.98473 1.50449 0.85659 0.80196 0.77514 0.78555 1.20248 1.19935 1.20241 1.20319 0.92902 0.97822 1.15080 1.17244 0.88914 0.81251 1.01276 1.91453 1.80093 1.46763 1.93815 0.90630 0.89392 0.92054 0.81743 0.84564 0.72936 0.72434 0.92595 0.90588 0.95643 0.92414 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.83 71.23 0.70 -0.71 16 2 C -0.18 -3.49 5.89 -19.80 -0.12 -3.60 16 3 C -0.03 -0.55 9.69 22.24 0.22 -0.33 16 4 C -0.21 -4.51 9.48 22.40 0.21 -4.29 16 5 C 0.23 5.86 6.72 38.21 0.26 6.11 16 6 N -0.55 -16.38 6.45 -51.39 -0.33 -16.71 16 7 N -0.52 -17.16 6.11 -173.53 -1.06 -18.22 16 8 C 0.52 22.80 7.27 87.66 0.64 23.43 16 9 O -0.58 -29.66 15.30 -3.02 -0.05 -29.70 16 10 C 0.04 1.86 2.64 -12.28 -0.03 1.83 16 11 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.12 -5.29 8.86 71.98 0.64 -4.65 16 13 C -0.53 -29.74 8.37 25.60 0.21 -29.53 16 14 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 15 C 0.02 1.30 5.30 84.65 0.45 1.75 16 16 N -0.91 -48.91 11.32 21.45 0.24 -48.66 16 17 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 C -0.24 -5.69 9.87 22.44 0.22 -5.47 16 22 C 0.13 3.04 7.24 22.35 0.16 3.20 16 23 F -0.14 -3.35 16.47 44.97 0.74 -2.61 16 24 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 26 H 0.06 0.88 7.63 -2.39 -0.02 0.86 16 27 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 28 H 0.14 2.52 6.20 -2.91 -0.02 2.51 16 29 H 0.43 13.44 8.01 -213.32 -1.71 11.73 16 30 H 0.43 11.61 6.02 -213.32 -1.28 10.33 16 31 H 0.06 1.84 7.56 -2.39 -0.02 1.83 16 32 H 0.08 3.60 6.07 -2.39 -0.01 3.58 16 33 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -64.02 302.85 3.27 -60.74 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -1.86 Total: 21.75 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.56 Total: -12.26 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.15 Total: -83.60 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.74 Total: -2.61 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.02 3.27 -60.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856232548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.706 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds