Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81399 * 103.00124 * 2 1 4 4 C 1.50700 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.38886 * 120.74861 * 270.28717 * 4 3 2 6 6 C 1.38026 * 119.33120 * 180.29789 * 5 4 3 7 7 N 1.31974 * 120.85540 * 359.68539 * 6 5 4 8 8 C 1.32400 * 121.61845 * 0.02562 * 7 6 5 9 9 N 1.39009 * 119.69949 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99795 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47116 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47293 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00169 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 120.00015 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47032 * 89.99940 * 17 15 13 19 19 H 1.48500 * 109.46784 * 209.99980 * 17 15 13 20 20 H 1.48496 * 109.46820 * 329.99911 * 17 15 13 21 21 C 1.38297 * 120.74853 * 89.99698 * 4 3 2 22 22 H 1.08994 * 109.47240 * 59.99713 * 1 2 3 23 23 H 1.08996 * 109.47727 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47039 * 300.00018 * 1 2 3 25 25 H 1.08996 * 109.47211 * 60.00545 * 3 2 1 26 26 H 1.08990 * 109.47280 * 299.99683 * 3 2 1 27 27 H 1.08003 * 120.33334 * 0.02562 * 5 4 3 28 28 H 1.08004 * 119.57370 * 179.69860 * 6 5 4 29 29 H 0.96994 * 119.99820 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.46940 * 299.99956 * 10 9 8 31 31 H 1.09003 * 109.46805 * 59.99711 * 10 9 8 32 32 H 1.09001 * 109.47386 * 299.99935 * 11 10 9 33 33 H 1.09007 * 109.47073 * 59.99815 * 11 10 9 34 34 H 1.09009 * 109.46848 * 300.00062 * 12 11 10 35 35 H 1.08995 * 109.46744 * 59.99719 * 12 11 10 36 36 H 0.96998 * 119.99968 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.45299 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4262 2.0112 1.1927 6 6 5.7965 2.1731 1.1580 7 7 6.4399 2.2518 0.0084 8 6 5.8027 2.1798 -1.1500 9 7 6.5204 2.2667 -2.3373 10 6 5.8220 2.1873 -3.6228 11 6 6.8357 2.3096 -4.7622 12 6 6.1065 2.2260 -6.1047 13 6 7.1049 2.3459 -7.2270 14 1 8.1547 2.4689 -7.0050 15 6 6.6784 2.2974 -8.5372 16 7 5.4002 2.1470 -8.8076 17 14 7.9161 2.4467 -9.9285 18 1 8.4092 1.0960 -10.2994 19 1 7.2645 3.0762 -11.1051 20 1 9.0583 3.2866 -9.4868 21 6 4.4215 2.0170 -1.1895 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8032 2.2371 0.8900 26 1 1.8032 2.2371 -0.8899 27 1 3.9082 1.9472 2.1382 28 1 6.3494 2.2360 2.0836 29 1 7.4834 2.3800 -2.3147 30 1 5.3052 1.2305 -3.6969 31 1 5.0971 2.9983 -3.6931 32 1 7.3522 3.2666 -4.6879 33 1 7.5609 1.4989 -4.6919 34 1 5.5903 1.2688 -6.1787 35 1 5.3810 3.0364 -6.1751 36 1 5.1002 2.1126 -9.7294 37 1 3.9041 1.9589 -2.1357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094155628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = 16.836078 kcal Electronic energy + Delta-G solvation = -16838.431100 eV Core-core repulsion = 14127.095926 eV Total energy + Delta-G solvation = -2711.335174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18465 -36.40825 -34.12468 -33.44324 -31.57208 -29.35955 -29.26649 -27.89062 -26.44084 -23.75003 -22.31250 -21.58391 -20.28980 -17.23612 -16.87757 -16.30032 -16.10833 -15.61854 -15.04367 -14.59927 -14.53916 -14.37485 -14.16178 -13.85699 -13.74859 -13.42316 -12.90098 -12.37996 -12.32033 -11.98322 -11.81440 -11.71406 -10.95014 -10.73238 -10.59428 -10.46953 -10.12115 -9.71940 -9.52608 -9.39925 -9.39274 -9.16011 -8.39591 -7.91728 -7.52925 -6.04659 -4.07387 0.86022 1.44335 1.89199 2.36539 3.29938 3.35697 3.37077 3.40970 4.02128 4.35144 4.42943 4.55159 4.84072 4.87034 4.87461 5.10925 5.23276 5.31046 5.31545 5.41341 5.43214 5.63150 5.67133 5.79816 5.95235 6.04754 6.33794 6.51232 6.54313 6.72333 6.93882 7.21319 7.59354 7.71551 7.79314 7.93850 8.30222 8.36187 8.99010 9.57109 11.06658 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.003380 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.193117 B = 8282.180073 C = 9420.544621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.243 6.243 3 C -0.047 4.047 4 C 0.007 3.993 5 C -0.230 4.230 6 C 0.149 3.851 7 N -0.548 5.548 8 C 0.409 3.591 9 N -0.718 5.718 10 C 0.123 3.877 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.221 4.221 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.404 0.596 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 -0.887 20.426 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.016 6.016 3 C -0.195 4.195 4 C -0.002 4.002 5 C -0.255 4.255 6 C -0.009 4.009 7 N -0.267 5.267 8 C 0.172 3.828 9 N -0.348 5.348 10 C -0.001 4.001 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.248 4.248 22 H 0.097 0.903 23 H 0.120 0.880 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.239 0.761 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.808 -1.691 20.047 21.239 hybrid contribution -0.845 1.010 -0.850 1.567 sum -7.653 -0.681 19.197 20.677 Atomic orbital electron populations 1.23428 0.94626 1.06614 1.04939 1.87304 1.06623 1.09623 1.98027 1.22312 0.95629 0.95534 1.05977 1.19206 0.92841 0.94853 0.93274 1.21566 0.95621 1.10384 0.97898 1.22302 0.91375 0.92390 0.94826 1.67196 1.40611 1.21412 0.97467 1.18417 0.88243 0.89568 0.86544 1.44887 1.09936 1.77726 1.02261 1.21719 0.96345 1.00967 0.81040 1.21867 0.97639 1.01138 0.95189 1.19026 0.95679 0.97534 0.89022 1.21204 0.93833 1.50093 0.90936 0.92616 1.25019 0.95206 0.95219 0.98967 1.69958 1.13899 1.50156 1.19360 0.86578 0.81346 0.78262 0.81735 1.20618 1.21192 1.19863 1.21296 0.93449 1.11015 0.99054 0.90306 0.87976 0.90555 0.88851 0.88741 0.85401 0.82955 0.76074 0.92057 0.92215 0.92581 0.92547 0.96267 0.96320 0.92930 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.76 101.05 1.09 0.18 16 2 S -0.24 -2.61 22.36 -107.50 -2.40 -5.01 16 3 C -0.05 -0.46 6.11 36.01 0.22 -0.24 16 4 C 0.01 0.09 5.17 -104.36 -0.54 -0.45 16 5 C -0.23 -2.56 9.81 -39.42 -0.39 -2.95 16 6 C 0.15 1.80 11.17 -17.57 -0.20 1.60 16 7 N -0.55 -8.19 10.39 -12.43 -0.13 -8.32 16 8 C 0.41 6.30 7.65 -155.01 -1.19 5.11 16 9 N -0.72 -11.11 5.73 -60.42 -0.35 -11.46 16 10 C 0.12 2.04 4.89 -4.04 -0.02 2.02 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.22 -3.11 9.03 -39.23 -0.35 -3.47 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 27 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 30 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 31 H 0.06 0.98 7.93 -51.93 -0.41 0.56 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.86 6.71 -52.49 -0.35 1.51 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -30.87 328.56 -9.99 -40.87 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.71 Total: 1.83 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.07 Total: -13.52 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.26 Total: -45.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.40 Total: -5.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.87 -9.99 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.701 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds