Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81399 * 103.00124 * 2 1 4 4 C 1.50700 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.38886 * 120.74861 * 270.28717 * 4 3 2 6 6 C 1.38026 * 119.33120 * 180.29789 * 5 4 3 7 7 N 1.31974 * 120.85540 * 359.68539 * 6 5 4 8 8 C 1.32400 * 121.61845 * 0.02562 * 7 6 5 9 9 N 1.39009 * 119.69949 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99795 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47116 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47293 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00169 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 120.00015 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47032 * 89.99940 * 17 15 13 19 19 H 1.48500 * 109.46784 * 209.99980 * 17 15 13 20 20 H 1.48496 * 109.46820 * 329.99911 * 17 15 13 21 21 C 1.38297 * 120.74853 * 89.99698 * 4 3 2 22 22 H 1.08994 * 109.47240 * 59.99713 * 1 2 3 23 23 H 1.08996 * 109.47727 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47039 * 300.00018 * 1 2 3 25 25 H 1.08996 * 109.47211 * 60.00545 * 3 2 1 26 26 H 1.08990 * 109.47280 * 299.99683 * 3 2 1 27 27 H 1.08003 * 120.33334 * 0.02562 * 5 4 3 28 28 H 1.08004 * 119.57370 * 179.69860 * 6 5 4 29 29 H 0.96994 * 119.99820 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.46940 * 299.99956 * 10 9 8 31 31 H 1.09003 * 109.46805 * 59.99711 * 10 9 8 32 32 H 1.09001 * 109.47386 * 299.99935 * 11 10 9 33 33 H 1.09007 * 109.47073 * 59.99815 * 11 10 9 34 34 H 1.09009 * 109.46848 * 300.00062 * 12 11 10 35 35 H 1.08995 * 109.46744 * 59.99719 * 12 11 10 36 36 H 0.96998 * 119.99968 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.45299 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4262 2.0112 1.1927 6 6 5.7965 2.1731 1.1580 7 7 6.4399 2.2518 0.0084 8 6 5.8027 2.1798 -1.1500 9 7 6.5204 2.2667 -2.3373 10 6 5.8220 2.1873 -3.6228 11 6 6.8357 2.3096 -4.7622 12 6 6.1065 2.2260 -6.1047 13 6 7.1049 2.3459 -7.2270 14 1 8.1547 2.4689 -7.0050 15 6 6.6784 2.2974 -8.5372 16 7 5.4002 2.1470 -8.8076 17 14 7.9161 2.4467 -9.9285 18 1 8.4092 1.0960 -10.2994 19 1 7.2645 3.0762 -11.1051 20 1 9.0583 3.2866 -9.4868 21 6 4.4215 2.0170 -1.1895 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8032 2.2371 0.8900 26 1 1.8032 2.2371 -0.8899 27 1 3.9082 1.9472 2.1382 28 1 6.3494 2.2360 2.0836 29 1 7.4834 2.3800 -2.3147 30 1 5.3052 1.2305 -3.6969 31 1 5.0971 2.9983 -3.6931 32 1 7.3522 3.2666 -4.6879 33 1 7.5609 1.4989 -4.6919 34 1 5.5903 1.2688 -6.1787 35 1 5.3810 3.0364 -6.1751 36 1 5.1002 2.1126 -9.7294 37 1 3.9041 1.9589 -2.1357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094155628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = -0.509794 kcal Electronic energy + Delta-G solvation = -16839.183273 eV Core-core repulsion = 14127.095926 eV Total energy + Delta-G solvation = -2712.087347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20325 -37.72871 -35.60098 -34.82393 -33.28457 -30.55257 -29.96401 -28.72365 -28.14045 -25.28591 -23.62615 -22.67379 -21.91907 -18.56644 -18.28305 -17.72914 -17.03001 -16.61725 -16.47772 -16.43112 -15.57047 -15.43898 -15.23137 -14.64438 -14.60357 -14.31657 -14.27395 -13.71733 -13.63886 -13.56320 -13.09754 -12.79064 -12.72834 -12.45464 -12.35317 -11.79777 -11.49062 -11.25048 -11.21224 -10.95586 -10.55792 -10.42901 -10.36330 -8.74596 -8.61857 -8.20926 -6.31610 -0.02051 0.45554 1.08627 1.40771 1.41564 1.52633 1.66098 2.19679 2.41922 3.01717 3.12889 3.47208 3.74617 3.95549 4.09037 4.19604 4.27682 4.29007 4.35529 4.36648 4.49144 4.51848 4.59079 4.86587 4.90530 4.92980 4.97453 4.98677 5.14086 5.41109 5.49189 5.69012 5.70263 5.82992 6.03583 6.23514 6.65479 6.84875 7.24709 7.37662 8.90879 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.003380 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.193117 B = 8282.180073 C = 9420.544621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.305 6.305 3 C -0.036 4.036 4 C 0.005 3.995 5 C -0.219 4.219 6 C 0.141 3.859 7 N -0.569 5.569 8 C 0.388 3.612 9 N -0.722 5.722 10 C 0.142 3.858 11 C -0.104 4.104 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.239 4.239 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.159 0.841 28 H 0.186 0.814 29 H 0.405 0.595 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.058 0.942 34 H -0.004 1.004 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -0.599 21.948 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.078 6.078 3 C -0.183 4.183 4 C -0.004 4.004 5 C -0.244 4.244 6 C -0.016 4.016 7 N -0.288 5.288 8 C 0.153 3.847 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.142 4.142 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.266 4.266 22 H 0.102 0.898 23 H 0.128 0.872 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.177 0.823 28 H 0.203 0.797 29 H 0.241 0.759 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.937 -1.402 21.602 22.732 hybrid contribution -0.897 0.898 -1.197 1.745 sum -7.834 -0.504 20.405 21.863 Atomic orbital electron populations 1.23468 0.90870 1.07534 1.06133 1.87496 1.10869 1.11237 1.98209 1.22299 0.94042 0.94531 1.07404 1.19526 0.94238 0.93731 0.92920 1.21945 0.95431 1.08200 0.98788 1.22934 0.92260 0.91412 0.95014 1.67198 1.41487 1.22086 0.98036 1.18553 0.88734 0.90860 0.86602 1.44643 1.09894 1.78882 1.01959 1.21323 0.95288 1.00723 0.80938 1.21578 0.97683 1.01442 0.93495 1.18909 0.95140 0.95395 0.91549 1.21671 0.94567 1.49893 0.92115 0.92155 1.25951 0.97167 0.94768 1.01849 1.70085 1.15899 1.51078 1.20086 0.85466 0.78930 0.78570 0.78204 1.19851 1.20729 1.18809 1.21364 0.93242 1.12244 0.99787 0.89759 0.87192 0.88683 0.86277 0.88445 0.82301 0.79745 0.75923 0.92582 0.92236 0.92120 0.92292 0.98515 0.98355 0.92734 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.76 113.37 1.22 -0.12 16 2 S -0.30 -6.18 22.36 -56.49 -1.26 -7.44 16 3 C -0.04 -0.63 6.11 71.24 0.44 -0.19 16 4 C 0.00 0.11 5.17 -19.69 -0.10 0.01 16 5 C -0.22 -4.33 9.81 22.37 0.22 -4.11 16 6 C 0.14 3.10 11.17 84.62 0.95 4.05 16 7 N -0.57 -16.52 10.39 -193.25 -2.01 -18.53 16 8 C 0.39 11.93 7.65 133.06 1.02 12.95 16 9 N -0.72 -22.62 5.73 -345.07 -1.98 -24.60 16 10 C 0.14 4.81 4.89 86.38 0.42 5.23 16 11 C -0.10 -4.13 5.27 30.59 0.16 -3.97 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 17 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C -0.24 -6.74 9.03 22.50 0.20 -6.54 16 22 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.12 1.46 8.10 -2.39 -0.02 1.44 16 26 H 0.10 1.64 8.10 -2.40 -0.02 1.62 16 27 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.41 12.11 8.60 -92.71 -0.80 11.32 16 30 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 31 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.13 3.65 6.71 -2.91 -0.02 3.63 16 Total: -1.00 -67.06 328.56 2.68 -64.38 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.25 Total: 17.08 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 5.37 Total: -21.07 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.70 Total: -99.02 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -1.26 Total: -7.44 kcal Total: -67.06 2.68 -64.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.866 kcal (2) G-P(sol) polarization free energy of solvation -67.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds