Wall clock time and date at job start Mon Mar 30 2020 07:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47424 * 2 1 4 4 H 1.08995 * 109.47333 * 57.10259 * 3 2 1 5 5 C 1.50705 * 109.47275 * 177.10653 * 3 2 1 6 6 H 1.07997 * 120.00084 * 120.27489 * 5 3 2 7 7 C 1.37877 * 119.99898 * 299.99777 * 5 3 2 8 8 N 1.31520 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47403 * 89.99901 * 9 7 5 11 11 H 1.48505 * 109.46856 * 210.00246 * 9 7 5 12 12 H 1.48504 * 109.47056 * 329.99804 * 9 7 5 13 13 N 1.46906 * 109.47104 * 297.10387 * 3 2 1 14 14 C 1.46898 * 110.99634 * 98.00931 * 13 3 2 15 15 H 1.08996 * 109.47622 * 319.73009 * 14 13 3 16 16 C 1.52998 * 109.46991 * 199.72825 * 14 13 3 17 17 C 1.52998 * 109.47346 * 65.74577 * 16 14 13 18 18 C 1.50703 * 109.46775 * 79.73402 * 14 13 3 19 19 C 1.38241 * 119.58883 * 204.72129 * 18 14 13 20 20 C 1.38591 * 119.19006 * 179.77007 * 19 18 14 21 21 C 1.38878 * 118.39964 * 0.49555 * 20 19 18 22 22 F 1.35095 * 120.44500 * 179.77451 * 21 20 19 23 23 C 1.38427 * 119.11146 * 359.74649 * 21 20 19 24 24 N 1.31843 * 119.59277 * 24.99454 * 18 14 13 25 25 H 1.09000 * 109.46519 * 305.13733 * 1 2 3 26 26 H 1.08997 * 109.47033 * 65.13661 * 1 2 3 27 27 H 1.09004 * 109.46858 * 185.14202 * 1 2 3 28 28 H 1.09003 * 109.46819 * 239.99667 * 2 1 3 29 29 H 1.09006 * 109.47207 * 120.00482 * 2 1 3 30 30 H 0.97006 * 119.99318 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99964 * 334.05657 * 13 3 2 32 32 H 1.08996 * 109.47319 * 185.74981 * 16 14 13 33 33 H 1.09008 * 109.47099 * 305.74624 * 16 14 13 34 34 H 1.08990 * 109.47437 * 184.41358 * 17 16 14 35 35 H 1.09000 * 109.46894 * 304.41865 * 17 16 14 36 36 H 1.09004 * 109.46844 * 64.41814 * 17 16 14 37 37 H 1.08001 * 120.39966 * 359.97438 * 19 18 14 38 38 H 1.07997 * 120.79795 * 180.22015 * 20 19 18 39 39 H 1.08001 * 119.63838 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6350 1.9711 0.8628 5 6 3.5454 1.4430 0.0717 6 1 4.1235 1.9010 -0.7172 7 6 4.1845 0.8637 1.1474 8 7 3.4804 0.3103 2.1105 9 14 6.0503 0.8650 1.2367 10 1 6.5115 2.0893 1.9392 11 1 6.5111 -0.3354 1.9796 12 1 6.6117 0.8420 -0.1380 13 7 1.6084 2.1145 -1.2329 14 6 0.4014 2.9185 -0.9992 15 1 -0.2763 2.3740 -0.3417 16 6 -0.2943 3.1936 -2.3338 17 6 -0.8110 1.8784 -2.9204 18 6 0.7854 4.2252 -0.3542 19 6 -0.1420 4.9071 0.4113 20 6 0.2215 6.1057 1.0046 21 6 1.5093 6.5821 0.7962 22 9 1.9059 7.7482 1.3511 23 6 2.3812 5.8458 0.0127 24 7 2.0000 4.7066 -0.5313 25 1 -0.3632 0.5915 0.8404 26 1 -0.3633 0.4321 -0.9324 27 1 -0.3633 -1.0236 0.0921 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9301 -0.0976 2.8671 31 1 1.4605 1.4476 -1.9755 32 1 -1.1310 3.8737 -2.1740 33 1 0.4148 3.6467 -3.0267 34 1 -1.2368 2.0628 -3.9066 35 1 0.0134 1.1706 -3.0071 36 1 -1.5777 1.4648 -2.2652 37 1 -1.1366 4.5090 0.5479 38 1 -0.4811 6.6581 1.6108 39 1 3.3845 6.2085 -0.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161334240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:08 Heat of formation + Delta-G solvation = -15.812429 kcal Electronic energy + Delta-G solvation = -20859.871536 eV Core-core repulsion = 17716.740535 eV Total energy + Delta-G solvation = -3143.131001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.73079 -39.91163 -37.14729 -34.02530 -32.14499 -31.61941 -30.83661 -29.62985 -26.74996 -25.16323 -23.50565 -22.71482 -22.48339 -20.09507 -19.66178 -17.37821 -16.97163 -16.28396 -15.88724 -15.53602 -14.98476 -14.69094 -14.17988 -13.86848 -13.61482 -13.38889 -13.25914 -12.93476 -12.69222 -12.36656 -12.22972 -12.07696 -11.46280 -11.29230 -11.12408 -10.92757 -10.77165 -10.59992 -10.49894 -9.98641 -9.70178 -9.66734 -9.60172 -9.02916 -8.90991 -8.44781 -8.24368 -7.09134 -5.88649 -3.88938 1.23573 1.45033 3.38622 3.44611 3.49576 4.00463 4.30134 4.51841 4.70303 4.78716 4.98621 5.06557 5.25910 5.32942 5.41518 5.45579 5.59253 5.73959 5.91823 5.97759 6.01464 6.07620 6.11490 6.12779 6.17712 6.19651 6.37747 6.44246 6.52384 6.81024 6.93424 6.99788 7.24145 7.42845 7.80604 8.01273 8.32259 8.46167 8.66245 8.71465 9.19696 9.74906 11.18010 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.008221 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.395340 B = 3405.067181 C = 4885.780452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.224 3.776 4 H 0.024 0.976 5 C -0.475 4.475 6 H 0.064 0.936 7 C 0.050 3.950 8 N -0.902 5.902 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.660 5.660 14 C 0.131 3.869 15 H 0.057 0.943 16 C -0.118 4.118 17 C -0.154 4.154 18 C 0.146 3.854 19 C -0.152 4.152 20 C -0.114 4.114 21 C 0.026 3.974 22 F -0.140 7.140 23 C 0.077 3.923 24 N -0.396 5.396 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.257 0.743 31 H 0.327 0.673 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 7.453 -5.100 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C 0.117 3.883 4 H 0.042 0.958 5 C -0.515 4.515 6 H 0.082 0.918 7 C -0.149 4.149 8 N -0.543 5.543 9 Si 0.722 3.278 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.292 5.292 14 C 0.019 3.981 15 H 0.074 0.926 16 C -0.156 4.156 17 C -0.211 4.211 18 C 0.007 3.993 19 C -0.172 4.172 20 C -0.141 4.141 21 C 0.004 3.996 22 F -0.119 7.119 23 C -0.083 4.083 24 N -0.102 5.102 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.681 7.446 -5.355 12.629 hybrid contribution -0.171 -0.013 1.172 1.184 sum -8.853 7.433 -4.184 12.293 Atomic orbital electron populations 1.22049 0.99748 0.99572 0.99917 1.22272 0.91337 1.02278 1.03064 1.19145 0.95256 0.87963 0.85976 0.95824 1.21200 0.90933 1.33841 1.05479 0.91751 1.24948 0.98003 0.96016 0.95917 1.69876 1.34687 1.39554 1.10199 0.86569 0.86197 0.77085 0.77944 1.21051 1.21658 1.19941 1.60667 1.29182 1.28821 1.10529 1.20464 0.92619 0.90161 0.94833 0.92553 1.21633 0.99521 0.97883 0.96575 1.21859 1.01221 0.97729 1.00309 1.21537 0.88529 0.96001 0.93267 1.21846 1.01495 0.95195 0.98676 1.21453 0.95056 0.97126 1.00439 1.18918 0.95390 0.85066 1.00189 1.91468 1.91154 1.45462 1.83800 1.23096 0.99855 0.91038 0.94265 1.67777 1.16230 1.08058 1.18149 0.93978 0.93983 0.94691 0.94524 0.88315 0.93354 0.85345 0.92167 0.90843 0.92757 0.91909 0.92783 0.84526 0.84296 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.50 37.16 0.32 -2.56 16 2 C -0.15 -3.42 5.08 -26.73 -0.14 -3.55 16 3 C 0.22 5.42 2.02 -68.86 -0.14 5.29 16 4 H 0.02 0.65 7.37 -51.93 -0.38 0.27 16 5 C -0.48 -13.12 8.84 -34.44 -0.30 -13.42 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.05 1.41 5.30 -17.82 -0.09 1.31 16 8 N -0.90 -25.91 11.30 55.43 0.63 -25.28 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.66 -13.39 5.40 -102.17 -0.55 -13.94 16 14 C 0.13 2.22 1.47 -68.86 -0.10 2.11 16 15 H 0.06 0.96 5.69 -51.93 -0.30 0.67 16 16 C -0.12 -1.59 5.53 -26.73 -0.15 -1.74 16 17 C -0.15 -1.83 8.65 37.16 0.32 -1.51 16 18 C 0.15 2.58 5.35 -82.58 -0.44 2.14 16 19 C -0.15 -2.22 9.76 -39.45 -0.39 -2.61 16 20 C -0.11 -1.59 10.16 -39.21 -0.40 -1.99 16 21 C 0.03 0.40 7.35 -39.27 -0.29 0.11 16 22 F -0.14 -2.10 17.28 2.25 0.04 -2.06 16 23 C 0.08 1.32 11.17 -17.46 -0.20 1.12 16 24 N -0.40 -7.70 9.73 -9.41 -0.09 -7.79 16 25 H 0.04 0.79 7.77 -51.93 -0.40 0.38 16 26 H 0.04 0.67 4.39 -51.93 -0.23 0.45 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.10 2.59 6.00 -51.93 -0.31 2.28 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.33 6.22 5.83 -39.29 -0.23 5.99 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.81 6.10 -51.93 -0.32 0.50 16 36 H 0.05 0.61 7.45 -51.93 -0.39 0.23 16 37 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -29.70 315.28 -7.72 -37.42 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.48 Total: 5.20 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.99 Total: -15.29 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.02 Total: -47.02 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.70 -7.72 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161334240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.603 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds