Wall clock time and date at job start Mon Mar 30 2020 07:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47424 * 2 1 4 4 H 1.08995 * 109.47333 * 57.10259 * 3 2 1 5 5 C 1.50705 * 109.47275 * 177.10653 * 3 2 1 6 6 H 1.07997 * 120.00084 * 120.27489 * 5 3 2 7 7 C 1.37877 * 119.99898 * 299.99777 * 5 3 2 8 8 N 1.31520 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47403 * 89.99901 * 9 7 5 11 11 H 1.48505 * 109.46856 * 210.00246 * 9 7 5 12 12 H 1.48504 * 109.47056 * 329.99804 * 9 7 5 13 13 N 1.46906 * 109.47104 * 297.10387 * 3 2 1 14 14 C 1.46898 * 110.99634 * 98.00931 * 13 3 2 15 15 H 1.08996 * 109.47622 * 319.73009 * 14 13 3 16 16 C 1.52998 * 109.46991 * 199.72825 * 14 13 3 17 17 C 1.52998 * 109.47346 * 65.74577 * 16 14 13 18 18 C 1.50703 * 109.46775 * 79.73402 * 14 13 3 19 19 C 1.38241 * 119.58883 * 204.72129 * 18 14 13 20 20 C 1.38591 * 119.19006 * 179.77007 * 19 18 14 21 21 C 1.38878 * 118.39964 * 0.49555 * 20 19 18 22 22 F 1.35095 * 120.44500 * 179.77451 * 21 20 19 23 23 C 1.38427 * 119.11146 * 359.74649 * 21 20 19 24 24 N 1.31843 * 119.59277 * 24.99454 * 18 14 13 25 25 H 1.09000 * 109.46519 * 305.13733 * 1 2 3 26 26 H 1.08997 * 109.47033 * 65.13661 * 1 2 3 27 27 H 1.09004 * 109.46858 * 185.14202 * 1 2 3 28 28 H 1.09003 * 109.46819 * 239.99667 * 2 1 3 29 29 H 1.09006 * 109.47207 * 120.00482 * 2 1 3 30 30 H 0.97006 * 119.99318 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99964 * 334.05657 * 13 3 2 32 32 H 1.08996 * 109.47319 * 185.74981 * 16 14 13 33 33 H 1.09008 * 109.47099 * 305.74624 * 16 14 13 34 34 H 1.08990 * 109.47437 * 184.41358 * 17 16 14 35 35 H 1.09000 * 109.46894 * 304.41865 * 17 16 14 36 36 H 1.09004 * 109.46844 * 64.41814 * 17 16 14 37 37 H 1.08001 * 120.39966 * 359.97438 * 19 18 14 38 38 H 1.07997 * 120.79795 * 180.22015 * 20 19 18 39 39 H 1.08001 * 119.63838 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6350 1.9711 0.8628 5 6 3.5454 1.4430 0.0717 6 1 4.1235 1.9010 -0.7172 7 6 4.1845 0.8637 1.1474 8 7 3.4804 0.3103 2.1105 9 14 6.0503 0.8650 1.2367 10 1 6.5115 2.0893 1.9392 11 1 6.5111 -0.3354 1.9796 12 1 6.6117 0.8420 -0.1380 13 7 1.6084 2.1145 -1.2329 14 6 0.4014 2.9185 -0.9992 15 1 -0.2763 2.3740 -0.3417 16 6 -0.2943 3.1936 -2.3338 17 6 -0.8110 1.8784 -2.9204 18 6 0.7854 4.2252 -0.3542 19 6 -0.1420 4.9071 0.4113 20 6 0.2215 6.1057 1.0046 21 6 1.5093 6.5821 0.7962 22 9 1.9059 7.7482 1.3511 23 6 2.3812 5.8458 0.0127 24 7 2.0000 4.7066 -0.5313 25 1 -0.3632 0.5915 0.8404 26 1 -0.3633 0.4321 -0.9324 27 1 -0.3633 -1.0236 0.0921 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9301 -0.0976 2.8671 31 1 1.4605 1.4476 -1.9755 32 1 -1.1310 3.8737 -2.1740 33 1 0.4148 3.6467 -3.0267 34 1 -1.2368 2.0628 -3.9066 35 1 0.0134 1.1706 -3.0071 36 1 -1.5777 1.4648 -2.2652 37 1 -1.1366 4.5090 0.5479 38 1 -0.4811 6.6581 1.6108 39 1 3.3845 6.2085 -0.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161334240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:08 Heat of formation + Delta-G solvation = -33.903317 kcal Electronic energy + Delta-G solvation = -20860.656015 eV Core-core repulsion = 17716.740535 eV Total energy + Delta-G solvation = -3143.915481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.93388 -41.17576 -38.66681 -35.65473 -33.56012 -33.34332 -32.01288 -31.14603 -28.49548 -26.62164 -24.79937 -24.45011 -23.63115 -21.59083 -21.25831 -18.57627 -18.29900 -18.23412 -17.19758 -16.76074 -16.70349 -16.27206 -15.68163 -15.12237 -14.84232 -14.77427 -14.72306 -14.46640 -13.95194 -13.68496 -13.63377 -13.37075 -13.10281 -13.06980 -12.73350 -12.51812 -12.34445 -12.15205 -11.88014 -11.67495 -11.53628 -11.35163 -10.92503 -10.81291 -10.37960 -10.23432 -9.69090 -8.73243 -8.01754 -6.08898 -0.00293 0.27768 1.39541 1.40893 1.51250 2.46633 2.74877 3.10049 3.24804 3.48938 3.52418 3.85558 3.85606 4.11121 4.24148 4.32540 4.42947 4.48997 4.60319 4.61638 4.72865 4.74466 4.86537 4.92867 4.98265 5.03237 5.09188 5.15867 5.26277 5.32286 5.45186 5.52423 5.63861 5.73689 5.81236 5.96841 6.43169 6.78940 6.97328 7.08200 7.21456 7.59410 9.01805 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.008221 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.395340 B = 3405.067181 C = 4885.780452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.239 3.761 4 H -0.011 1.011 5 C -0.490 4.490 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.947 3.053 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.131 3.869 15 H 0.059 0.941 16 C -0.109 4.109 17 C -0.151 4.151 18 C 0.119 3.881 19 C -0.146 4.146 20 C -0.105 4.105 21 C 0.023 3.977 22 F -0.138 7.138 23 C 0.056 3.944 24 N -0.439 5.439 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.256 0.744 31 H 0.333 0.667 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 7.940 -5.497 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.131 3.869 4 H 0.006 0.994 5 C -0.529 4.529 6 H 0.064 0.936 7 C -0.191 4.191 8 N -0.565 5.565 9 Si 0.774 3.226 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.300 5.300 14 C 0.019 3.981 15 H 0.077 0.923 16 C -0.147 4.147 17 C -0.209 4.209 18 C -0.020 4.020 19 C -0.166 4.166 20 C -0.131 4.131 21 C 0.002 3.998 22 F -0.116 7.116 23 C -0.103 4.103 24 N -0.147 5.147 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.188 0.812 38 H 0.194 0.806 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.598 7.941 -5.768 14.444 hybrid contribution 0.411 -0.099 1.287 1.354 sum -10.187 7.841 -4.481 13.614 Atomic orbital electron populations 1.21908 0.96168 1.00879 1.01094 1.22082 0.94564 1.00702 1.01093 1.18754 0.93235 0.88592 0.86329 0.99355 1.21485 0.93098 1.33370 1.04944 0.93565 1.25594 1.01686 0.95986 0.95828 1.70002 1.35872 1.40131 1.10491 0.85727 0.81939 0.77002 0.77933 1.21163 1.21002 1.19575 1.60456 1.31905 1.28669 1.08942 1.20589 0.91304 0.89349 0.96819 0.92307 1.21585 0.99618 0.99239 0.94261 1.21846 1.00952 0.96418 1.01655 1.21830 0.88892 0.96714 0.94562 1.22166 1.02323 0.94947 0.97158 1.21863 0.94753 0.96797 0.99702 1.18962 0.95967 0.84998 0.99898 1.91473 1.91259 1.45234 1.83667 1.23230 1.00716 0.91168 0.95224 1.67668 1.17734 1.09367 1.19895 0.94436 0.91400 0.93015 0.94753 0.91916 0.93506 0.84675 0.89720 0.92173 0.90633 0.93281 0.91779 0.81154 0.80593 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 8.50 71.98 0.61 -4.47 16 2 C -0.14 -6.64 5.08 30.59 0.16 -6.49 16 3 C 0.24 11.82 2.02 44.17 0.09 11.91 16 4 H -0.01 -0.64 7.37 -2.39 -0.02 -0.66 16 5 C -0.49 -27.79 8.84 25.60 0.23 -27.56 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.34 5.30 84.65 0.45 0.79 16 8 N -0.92 -54.20 11.30 21.45 0.24 -53.96 16 9 Si 0.95 46.01 29.54 68.60 2.03 48.04 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.67 -27.20 5.40 -477.16 -2.58 -29.77 16 14 C 0.13 4.27 1.47 44.17 0.06 4.34 16 15 H 0.06 1.90 5.69 -2.39 -0.01 1.89 16 16 C -0.11 -2.69 5.53 30.59 0.17 -2.52 16 17 C -0.15 -3.17 8.65 71.98 0.62 -2.55 16 18 C 0.12 4.12 5.35 42.56 0.23 4.35 16 19 C -0.15 -3.93 9.76 22.35 0.22 -3.71 16 20 C -0.10 -2.65 10.16 22.51 0.23 -2.42 16 21 C 0.02 0.70 7.35 22.47 0.17 0.86 16 22 F -0.14 -3.96 17.28 44.97 0.78 -3.18 16 23 C 0.06 1.93 11.17 84.73 0.95 2.87 16 24 N -0.44 -17.37 9.73 -183.69 -1.79 -19.15 16 25 H 0.04 1.35 7.77 -2.39 -0.02 1.33 16 26 H 0.07 2.03 4.39 -2.39 -0.01 2.02 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 29 H 0.06 3.36 6.00 -2.38 -0.01 3.34 16 30 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.33 12.59 5.83 -89.70 -0.52 12.06 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.16 6.10 -2.39 -0.01 1.15 16 36 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 37 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -66.09 315.28 3.39 -62.70 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.53 Total: 19.93 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 4.17 Total: -24.60 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -4.12 Total: -102.89 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.09 3.39 -62.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161334240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.798 kcal (2) G-P(sol) polarization free energy of solvation -66.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds