Wall clock time and date at job start Mon Mar 30 2020 07:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99746 * 2 1 4 4 H 1.09001 * 109.47010 * 326.74453 * 3 2 1 5 5 C 1.50691 * 109.47215 * 86.75075 * 3 2 1 6 6 N 1.29944 * 126.28730 * 44.97632 * 5 3 2 7 7 O 1.21304 * 110.25445 * 179.97438 * 6 5 3 8 8 C 1.33646 * 109.80757 * 359.97438 * 7 6 5 9 9 C 1.50696 * 126.55156 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47199 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47232 * 59.97357 * 9 8 7 12 12 C 1.52997 * 109.47095 * 299.97319 * 9 8 7 13 13 C 1.50698 * 109.47610 * 185.00042 * 12 9 8 14 14 H 1.08006 * 119.99725 * 359.97438 * 13 12 9 15 15 C 1.37881 * 120.00603 * 180.02562 * 13 12 9 16 16 N 1.31512 * 119.99476 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46784 * 59.99894 * 17 15 13 19 19 H 1.48501 * 109.46733 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47203 * 299.99594 * 17 15 13 21 21 N 1.31130 * 106.89792 * 359.97438 * 8 7 6 22 22 C 1.53003 * 109.47018 * 206.75181 * 3 2 1 23 23 C 1.53002 * 117.50107 * 131.72747 * 22 3 2 24 24 C 1.53007 * 117.49834 * 63.06815 * 22 3 2 25 25 H 1.09002 * 109.46655 * 184.79995 * 1 2 3 26 26 H 1.09007 * 109.46677 * 304.79186 * 1 2 3 27 27 H 1.08991 * 109.47465 * 64.79406 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00183 * 11 9 8 29 29 H 1.08997 * 109.47165 * 60.00231 * 11 9 8 30 30 H 1.08998 * 109.46803 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.47656 * 305.00398 * 12 9 8 32 32 H 1.09005 * 109.47319 * 64.99895 * 12 9 8 33 33 H 0.96998 * 120.00098 * 180.02562 * 16 15 13 34 34 H 1.08998 * 115.55389 * 277.39983 * 22 3 2 35 35 H 1.09009 * 117.49614 * 359.97438 * 23 22 3 36 36 H 1.08999 * 117.50175 * 145.02174 * 23 22 3 37 37 H 1.09004 * 117.49566 * 214.98057 * 24 22 3 38 38 H 1.09004 * 117.49814 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3728 1.9869 -0.5635 5 6 2.1409 1.7972 1.4184 6 7 2.5860 1.1150 2.4309 7 8 2.5666 1.7940 3.4359 8 6 2.0934 3.0110 3.1512 9 6 1.9099 4.1516 4.1188 10 1 1.5059 5.0151 3.5902 11 6 3.2606 4.5182 4.7370 12 6 0.9400 3.7311 5.2248 13 6 0.6609 4.9087 6.1228 14 1 1.1289 5.8617 5.9247 15 6 -0.1910 4.7693 7.1980 16 7 -0.7604 3.6087 7.4395 17 14 -0.5364 6.2289 8.3114 18 1 -1.1406 7.3270 7.5149 19 1 -1.4778 5.8206 9.3848 20 1 0.7342 6.6993 8.9192 21 7 1.8203 3.0233 1.8687 22 6 3.3944 1.2475 -0.6493 23 6 3.7178 2.2936 -1.7181 24 6 3.4674 0.8384 -2.1219 25 1 -0.3633 -1.0241 0.0860 26 1 -0.3633 0.5864 0.8440 27 1 -0.3634 0.4376 -0.9297 28 1 3.6646 3.6548 5.2656 29 1 3.9515 4.8179 3.9491 30 1 3.1277 5.3430 5.4372 31 1 0.0076 3.3855 4.7785 32 1 1.3833 2.9252 5.8098 33 1 -1.3600 3.5106 8.1956 34 1 4.2066 0.9268 0.0029 35 1 2.9442 3.0228 -1.9589 36 1 4.7428 2.6607 -1.7691 37 1 4.3278 0.2488 -2.4383 38 1 2.5293 0.6101 -2.6279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234769654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:39 Heat of formation + Delta-G solvation = 33.826562 kcal Electronic energy + Delta-G solvation = -20134.706997 eV Core-core repulsion = 16981.355714 eV Total energy + Delta-G solvation = -3153.351282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.14037 -39.01149 -36.50935 -35.90125 -35.02718 -32.58901 -30.98187 -28.59948 -27.14972 -26.21439 -24.62172 -23.24911 -22.63407 -22.42750 -21.01797 -19.56766 -17.61486 -17.23401 -16.72292 -16.35020 -16.00968 -15.54197 -14.90251 -14.60698 -14.46834 -13.76792 -13.42600 -12.99579 -12.64437 -12.16600 -12.00548 -11.94393 -11.78150 -11.52312 -11.37452 -11.14152 -11.00502 -10.91700 -10.68312 -10.61650 -10.57841 -10.43814 -10.17763 -10.06929 -9.87254 -9.28442 -9.20433 -8.45697 -6.09709 -4.13982 1.61038 2.52661 3.19290 3.29111 3.33823 3.34957 3.37872 3.60938 4.05141 4.36584 4.50157 4.56692 4.67623 4.82615 4.91909 5.15022 5.26468 5.27006 5.40323 5.43750 5.49338 5.59245 5.66731 5.72250 5.82064 5.89228 5.95316 5.95830 6.23463 6.31093 6.54659 6.65905 6.81559 6.90967 7.46068 7.54663 7.85312 8.21456 8.59824 8.90113 9.50513 11.01571 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.004031 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.508144 B = 6944.556640 C = 7355.511156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.218 3.782 4 H 0.090 0.910 5 C 0.133 3.867 6 N -0.372 5.372 7 O 0.079 5.921 8 C 0.218 3.782 9 C -0.001 4.001 10 H 0.105 0.895 11 C -0.135 4.135 12 C 0.029 3.971 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.497 5.497 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.160 4.160 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -3.182 -15.777 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.281 6.281 3 C 0.158 3.842 4 H 0.108 0.892 5 C -0.140 4.140 6 N -0.081 5.081 7 O 0.020 5.980 8 C -0.002 4.002 9 C -0.022 4.022 10 H 0.123 0.877 11 C -0.193 4.193 12 C -0.009 4.009 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.231 5.231 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.197 4.197 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.471 -4.135 -16.133 17.867 hybrid contribution -0.599 0.962 0.927 1.464 sum 5.872 -3.174 -15.206 16.606 Atomic orbital electron populations 1.22889 0.80488 1.03238 1.00362 1.88008 1.20081 1.25722 1.94337 1.19567 0.94251 0.85118 0.85234 0.89195 1.26180 1.00630 0.88108 0.99129 1.74594 1.20618 1.18746 0.94143 1.85313 1.60655 1.21477 1.30529 1.29609 0.90146 0.88597 0.91813 1.20354 0.99555 0.89081 0.93163 0.87651 1.21781 0.94019 1.03202 1.00303 1.19237 0.92766 0.97953 0.90925 1.21018 1.27739 0.96267 1.11029 0.91984 1.25002 0.95675 0.95885 0.97625 1.69955 1.30259 1.23453 1.29297 0.86598 0.78252 0.82613 0.80216 1.20141 1.21292 1.20060 1.71890 1.23473 1.19702 1.08038 1.22091 0.96259 1.06286 0.92350 1.23070 1.03230 0.92471 1.01682 1.22886 1.03568 0.97447 0.95829 0.89065 0.93767 0.93581 0.92302 0.94066 0.89634 0.96067 0.95249 0.92710 0.87055 0.88241 0.88157 0.88331 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.79 101.05 1.09 1.41 16 2 O -0.36 -5.30 10.30 -35.23 -0.36 -5.66 16 3 C 0.22 3.12 2.83 -27.89 -0.08 3.04 16 4 H 0.09 1.16 7.65 -51.93 -0.40 0.76 16 5 C 0.13 2.39 6.89 -156.38 -1.08 1.31 16 6 N -0.37 -7.30 12.16 30.90 0.38 -6.92 16 7 O 0.08 1.59 11.31 18.09 0.20 1.80 16 8 C 0.22 4.28 7.02 -13.06 -0.09 4.18 16 9 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 10 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 11 C -0.14 -2.31 8.99 37.16 0.33 -1.98 16 12 C 0.03 0.71 4.43 -27.89 -0.12 0.59 16 13 C -0.52 -13.63 8.41 -34.44 -0.29 -13.92 16 14 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 17 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 N -0.50 -9.48 11.55 -9.87 -0.11 -9.60 16 22 C -0.15 -1.84 5.34 -90.61 -0.48 -2.33 16 23 C -0.17 -1.61 10.18 -26.69 -0.27 -1.88 16 24 C -0.16 -1.49 10.21 -26.69 -0.27 -1.76 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.60 8.01 -51.93 -0.42 0.18 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.11 1.48 8.13 -51.93 -0.42 1.06 16 35 H 0.10 0.90 8.07 -51.92 -0.42 0.48 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -30.01 328.40 -6.60 -36.61 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.75 Total: -1.64 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.62 Total: -10.06 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.00 Total: -41.61 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.16 Total: -3.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.01 -6.60 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234769654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.438 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds