Wall clock time and date at job start Mon Mar 30 2020 07:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99746 * 2 1 4 4 H 1.09001 * 109.47010 * 326.74453 * 3 2 1 5 5 C 1.50691 * 109.47215 * 86.75075 * 3 2 1 6 6 N 1.29944 * 126.28730 * 44.97632 * 5 3 2 7 7 O 1.21304 * 110.25445 * 179.97438 * 6 5 3 8 8 C 1.33646 * 109.80757 * 359.97438 * 7 6 5 9 9 C 1.50696 * 126.55156 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47199 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47232 * 59.97357 * 9 8 7 12 12 C 1.52997 * 109.47095 * 299.97319 * 9 8 7 13 13 C 1.50698 * 109.47610 * 185.00042 * 12 9 8 14 14 H 1.08006 * 119.99725 * 359.97438 * 13 12 9 15 15 C 1.37881 * 120.00603 * 180.02562 * 13 12 9 16 16 N 1.31512 * 119.99476 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46784 * 59.99894 * 17 15 13 19 19 H 1.48501 * 109.46733 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47203 * 299.99594 * 17 15 13 21 21 N 1.31130 * 106.89792 * 359.97438 * 8 7 6 22 22 C 1.53003 * 109.47018 * 206.75181 * 3 2 1 23 23 C 1.53002 * 117.50107 * 131.72747 * 22 3 2 24 24 C 1.53007 * 117.49834 * 63.06815 * 22 3 2 25 25 H 1.09002 * 109.46655 * 184.79995 * 1 2 3 26 26 H 1.09007 * 109.46677 * 304.79186 * 1 2 3 27 27 H 1.08991 * 109.47465 * 64.79406 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00183 * 11 9 8 29 29 H 1.08997 * 109.47165 * 60.00231 * 11 9 8 30 30 H 1.08998 * 109.46803 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.47656 * 305.00398 * 12 9 8 32 32 H 1.09005 * 109.47319 * 64.99895 * 12 9 8 33 33 H 0.96998 * 120.00098 * 180.02562 * 16 15 13 34 34 H 1.08998 * 115.55389 * 277.39983 * 22 3 2 35 35 H 1.09009 * 117.49614 * 359.97438 * 23 22 3 36 36 H 1.08999 * 117.50175 * 145.02174 * 23 22 3 37 37 H 1.09004 * 117.49566 * 214.98057 * 24 22 3 38 38 H 1.09004 * 117.49814 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3728 1.9869 -0.5635 5 6 2.1409 1.7972 1.4184 6 7 2.5860 1.1150 2.4309 7 8 2.5666 1.7940 3.4359 8 6 2.0934 3.0110 3.1512 9 6 1.9099 4.1516 4.1188 10 1 1.5059 5.0151 3.5902 11 6 3.2606 4.5182 4.7370 12 6 0.9400 3.7311 5.2248 13 6 0.6609 4.9087 6.1228 14 1 1.1289 5.8617 5.9247 15 6 -0.1910 4.7693 7.1980 16 7 -0.7604 3.6087 7.4395 17 14 -0.5364 6.2289 8.3114 18 1 -1.1406 7.3270 7.5149 19 1 -1.4778 5.8206 9.3848 20 1 0.7342 6.6993 8.9192 21 7 1.8203 3.0233 1.8687 22 6 3.3944 1.2475 -0.6493 23 6 3.7178 2.2936 -1.7181 24 6 3.4674 0.8384 -2.1219 25 1 -0.3633 -1.0241 0.0860 26 1 -0.3633 0.5864 0.8440 27 1 -0.3634 0.4376 -0.9297 28 1 3.6646 3.6548 5.2656 29 1 3.9515 4.8179 3.9491 30 1 3.1277 5.3430 5.4372 31 1 0.0076 3.3855 4.7785 32 1 1.3833 2.9252 5.8098 33 1 -1.3600 3.5106 8.1956 34 1 4.2066 0.9268 0.0029 35 1 2.9442 3.0228 -1.9589 36 1 4.7428 2.6607 -1.7691 37 1 4.3278 0.2488 -2.4383 38 1 2.5293 0.6101 -2.6279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234769654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:38 Heat of formation + Delta-G solvation = 14.491084 kcal Electronic energy + Delta-G solvation = -20135.545446 eV Core-core repulsion = 16981.355714 eV Total energy + Delta-G solvation = -3154.189732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.65279 -40.03502 -37.56777 -37.39721 -36.54841 -34.52392 -32.55690 -29.72811 -29.00547 -27.26601 -26.28473 -24.79443 -24.10393 -23.25201 -22.19812 -20.98390 -19.12411 -18.69101 -18.51471 -17.60870 -17.16032 -16.62841 -16.51092 -16.11561 -15.77426 -15.12770 -14.60835 -14.43207 -14.08957 -13.84479 -13.52933 -13.14092 -13.04273 -12.83213 -12.65375 -12.61523 -12.45227 -12.35440 -12.28368 -12.13386 -11.93824 -11.67028 -11.47545 -11.29129 -11.25126 -11.07755 -10.83317 -10.54243 -8.17966 -6.29074 0.07381 1.06891 1.47172 1.49544 1.56911 1.82533 2.17929 2.42049 2.48470 3.03506 3.14355 3.17508 3.59552 3.71578 3.92168 4.00623 4.12158 4.20290 4.25323 4.26938 4.34669 4.44862 4.53448 4.68197 4.74788 4.75862 4.79136 4.95415 5.02981 5.07050 5.09220 5.21868 5.35558 5.39472 5.56963 5.79185 5.86847 6.15567 6.84839 7.07798 7.40459 8.94463 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.004031 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.508144 B = 6944.556640 C = 7355.511156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.217 3.783 4 H 0.106 0.894 5 C 0.142 3.858 6 N -0.392 5.392 7 O 0.061 5.939 8 C 0.212 3.788 9 C 0.009 3.991 10 H 0.115 0.885 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.080 0.920 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.262 1.262 21 N -0.500 5.500 22 C -0.180 4.180 23 C -0.156 4.156 24 C -0.142 4.142 25 H 0.107 0.893 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.086 0.914 31 H -0.014 1.014 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -1.792 -17.386 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.296 6.296 3 C 0.157 3.843 4 H 0.123 0.877 5 C -0.132 4.132 6 N -0.104 5.104 7 O 0.006 5.994 8 C -0.008 4.008 9 C -0.011 4.011 10 H 0.133 0.867 11 C -0.186 4.186 12 C -0.001 4.001 13 C -0.567 4.567 14 H 0.098 0.902 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.217 1.217 20 H -0.186 1.186 21 N -0.235 5.235 22 C -0.199 4.199 23 C -0.193 4.193 24 C -0.178 4.178 25 H 0.126 0.874 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.005 0.995 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.190 -2.730 -17.734 19.329 hybrid contribution -0.840 0.458 1.349 1.654 sum 6.350 -2.271 -16.385 17.718 Atomic orbital electron populations 1.23068 0.79369 1.04223 1.00758 1.87999 1.21403 1.26002 1.94182 1.19875 0.95916 0.85297 0.83190 0.87654 1.26965 0.98544 0.87358 1.00331 1.74587 1.22078 1.19201 0.94508 1.85294 1.61242 1.21721 1.31121 1.29605 0.90439 0.88546 0.92202 1.20170 0.99911 0.89186 0.91837 0.86692 1.21739 0.92890 1.02993 1.01025 1.19031 0.92240 0.96947 0.91918 1.21476 1.27192 0.97190 1.10876 0.90193 1.25967 0.95606 0.98639 0.99470 1.70113 1.31374 1.25961 1.30145 0.85472 0.78412 0.79034 0.77982 1.19048 1.21705 1.18621 1.71898 1.23407 1.20433 1.07762 1.22023 0.94486 1.09758 0.93615 1.23198 1.04156 0.92680 0.99257 1.23007 1.04583 0.97374 0.92883 0.87428 0.96195 0.90751 0.92746 0.91189 0.89544 0.99533 0.97838 0.92853 0.88823 0.87493 0.86993 0.86944 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.79 113.37 1.22 1.72 16 2 O -0.38 -10.68 10.30 -148.98 -1.53 -12.21 16 3 C 0.22 6.00 2.83 29.85 0.08 6.09 16 4 H 0.11 2.53 7.65 -2.39 -0.02 2.52 16 5 C 0.14 5.09 6.89 138.46 0.95 6.05 16 6 N -0.39 -15.67 12.16 -60.30 -0.73 -16.41 16 7 O 0.06 2.52 11.31 74.80 0.85 3.37 16 8 C 0.21 8.41 7.02 88.38 0.62 9.03 16 9 C 0.01 0.37 2.81 -11.54 -0.03 0.33 16 10 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 11 C -0.13 -4.26 8.99 71.98 0.65 -3.61 16 12 C 0.04 1.85 4.43 29.85 0.13 1.98 16 13 C -0.53 -27.67 8.41 25.60 0.22 -27.45 16 14 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 15 C 0.00 0.06 5.46 84.66 0.46 0.53 16 16 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 17 Si 0.97 42.08 29.54 68.60 2.03 44.10 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 21 N -0.50 -19.01 11.55 -303.18 -3.50 -22.51 16 22 C -0.18 -4.14 5.34 -10.79 -0.06 -4.20 16 23 C -0.16 -2.59 10.18 30.62 0.31 -2.28 16 24 C -0.14 -2.25 10.21 30.62 0.31 -1.94 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.02 0.53 8.01 -2.38 -0.02 0.51 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 2.85 6.95 -2.39 -0.02 2.83 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 32 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16 35 H 0.11 1.62 8.07 -2.38 -0.02 1.60 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.11 1.52 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -65.62 328.40 3.30 -62.32 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.04 Total: 10.45 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.87 Total: -13.76 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.95 Total: -94.27 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.69 Total: -8.84 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.62 3.30 -62.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234769654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.812 kcal (2) G-P(sol) polarization free energy of solvation -65.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds