Wall clock time and date at job start Mon Mar 30 2020 07:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 110.34929 * 2 1 4 4 O 1.44314 * 110.38960 * 122.30298 * 2 1 3 5 Xx 1.43464 * 104.66739 * 95.12772 * 4 2 1 6 5 C 1.56999 * 127.55897 * 219.56592 * 5 4 2 7 6 C 1.53006 * 109.47119 * 300.00060 * 6 5 4 8 7 C 1.52997 * 109.47198 * 179.97438 * 7 6 5 9 8 C 1.52998 * 109.47407 * 59.99564 * 8 7 6 10 9 C 1.50701 * 109.46752 * 60.00110 * 9 8 7 11 10 N 1.27939 * 120.00287 * 24.94134 * 10 9 8 12 11 Si 1.86797 * 119.99879 * 204.94141 * 10 9 8 13 12 H 1.48493 * 109.47187 * 60.00063 * 12 10 9 14 13 H 1.48503 * 109.47141 * 179.97438 * 12 10 9 15 14 H 1.48503 * 109.47407 * 299.99995 * 12 10 9 16 15 C 1.52995 * 109.47068 * 300.00130 * 9 8 7 17 16 C 1.52996 * 109.47292 * 179.97438 * 6 5 4 18 17 O 1.43471 * 104.88890 * 39.58523 * 5 4 2 19 18 C 1.44577 * 104.70917 * 320.45809 * 18 5 4 20 19 C 1.52999 * 110.42300 * 264.84071 * 19 18 5 21 20 C 1.52997 * 110.48028 * 142.36935 * 19 18 5 22 21 H 1.09002 * 109.47142 * 60.70596 * 1 2 3 23 22 H 1.08993 * 109.47083 * 300.69832 * 1 2 3 24 23 H 1.09007 * 109.47002 * 180.70095 * 1 2 3 25 24 H 1.08998 * 109.47492 * 59.29574 * 3 2 1 26 25 H 1.09004 * 109.47319 * 179.29852 * 3 2 1 27 26 H 1.09001 * 109.47318 * 299.29751 * 3 2 1 28 27 H 1.09005 * 109.47047 * 59.99531 * 6 5 4 29 28 H 1.09000 * 109.46975 * 300.00063 * 7 6 5 30 29 H 1.09005 * 109.47104 * 59.99674 * 7 6 5 31 30 H 1.09005 * 109.47065 * 299.99531 * 8 7 6 32 31 H 1.09002 * 109.47093 * 180.02562 * 8 7 6 33 32 H 1.09001 * 109.47276 * 179.97438 * 9 8 7 34 33 H 0.97005 * 120.00515 * 179.97438 * 11 10 9 35 34 H 1.08992 * 109.47649 * 299.99969 * 16 9 8 36 35 H 1.09005 * 109.46874 * 179.97438 * 16 9 8 37 36 H 1.08995 * 109.47188 * 299.99348 * 17 6 5 38 37 H 1.08992 * 109.47224 * 60.00452 * 17 6 5 39 38 H 1.09002 * 109.46948 * 175.14167 * 20 19 18 40 39 H 1.09003 * 109.47380 * 295.14040 * 20 19 18 41 40 H 1.08998 * 109.47187 * 55.14654 * 20 19 18 42 41 H 1.09001 * 109.47662 * 304.82728 * 21 19 18 43 42 H 1.09002 * 109.47349 * 64.82105 * 21 19 18 44 43 H 1.08995 * 109.47549 * 184.82241 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4344 0.0000 4 8 2.0328 -0.7229 1.1434 5 6 2.0006 -3.4069 1.3965 6 6 2.8105 -3.4532 2.6938 7 6 2.5419 -4.7751 3.4158 8 6 2.9543 -5.9411 2.5152 9 6 4.4229 -5.8331 2.1947 10 7 5.2064 -5.2056 2.9879 11 14 5.0993 -6.6155 0.6392 12 1 4.4291 -6.0218 -0.5454 13 1 6.5612 -6.3679 0.5559 14 1 4.8455 -8.0784 0.6701 15 6 2.1444 -5.8948 1.2180 16 6 2.4130 -4.5726 0.4954 17 8 2.8254 -1.8661 -0.6564 18 6 2.0674 -0.7725 -1.2219 19 6 0.9089 -1.3066 -2.0667 20 6 2.9732 0.1271 -2.0651 21 1 -0.3633 0.5028 -0.8963 22 1 -0.3633 0.5246 0.8836 23 1 -0.3633 -1.0277 0.0126 24 1 1.6965 1.9576 0.8836 25 1 3.1519 1.4178 0.0126 26 1 1.7169 1.9500 -0.8962 27 1 0.9384 -3.4854 1.6283 28 1 3.8726 -3.3746 2.4620 29 1 2.5162 -2.6227 3.3356 30 1 1.4797 -4.8531 3.6477 31 1 3.1185 -4.8078 4.3402 32 1 2.7634 -6.8829 3.0298 33 1 6.1518 -5.1364 2.7819 34 1 1.0823 -5.9729 1.4498 35 1 2.4386 -6.7253 0.5762 36 1 1.8356 -4.5395 -0.4285 37 1 3.4750 -4.4943 0.2633 38 1 0.2981 -0.4733 -2.4140 39 1 1.3051 -1.8492 -2.9251 40 1 0.2982 -1.9778 -1.4629 41 1 3.8149 0.4646 -1.4603 42 1 3.3442 -0.4330 -2.9235 43 1 2.4060 0.9906 -2.4125 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260273843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:42 Heat of formation + Delta-G solvation = 103.977238 kcal Electronic energy + Delta-G solvation = -20776.600234 eV Core-core repulsion = 17830.745919 eV Total energy + Delta-G solvation = -2945.854315 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.183 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -40.74494 -38.83758 -36.00316 -33.46679 -32.57115 -31.77628 -31.24682 -29.68355 -29.24960 -26.19953 -24.81775 -24.11967 -22.69649 -22.48672 -19.65419 -18.26144 -18.06555 -17.20601 -16.31990 -15.96383 -15.88705 -15.48612 -15.31048 -15.06516 -14.79652 -14.15906 -13.97711 -13.89809 -13.77946 -13.57678 -13.19253 -13.08581 -12.96779 -12.81126 -12.70133 -12.64514 -12.44128 -12.37260 -12.02173 -12.02051 -11.85061 -11.73438 -11.54647 -11.47184 -11.45931 -10.06923 -9.55985 -9.26938 -8.69360 -5.11964 -1.93150 0.58564 0.84005 1.19407 1.50389 1.66053 2.88193 3.02099 3.08552 3.26362 3.34092 3.38847 3.72162 3.83054 3.90799 4.10122 4.18920 4.24708 4.28706 4.38606 4.44366 4.52833 4.53300 4.58486 4.60869 4.69399 4.81923 4.82920 4.85152 4.88442 4.94719 5.04382 5.04828 5.06089 5.09955 5.29371 5.29771 5.40372 5.49292 5.68187 5.89181 6.30977 6.63102 6.86181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 C -0.146 4.146 4 O -0.554 6.554 5 C 0.312 3.688 6 C -0.163 4.163 7 C -0.083 4.083 8 C -0.076 4.076 9 C -0.008 4.008 10 N -0.621 5.621 11 Si 0.914 3.086 12 H -0.226 1.226 13 H -0.247 1.247 14 H -0.233 1.233 15 C -0.108 4.108 16 C -0.170 4.170 17 O -0.558 6.558 18 C 0.149 3.851 19 C -0.152 4.152 20 C -0.145 4.145 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.343 0.657 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 -7.507 1.429 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.089 3.911 3 C -0.203 4.203 4 O -0.492 6.492 5 C 0.291 3.709 6 C -0.200 4.200 7 C -0.120 4.120 8 C -0.095 4.095 9 C -0.257 4.257 10 N -0.235 5.235 11 Si 0.730 3.270 12 H -0.148 1.148 13 H -0.170 1.170 14 H -0.155 1.155 15 C -0.145 4.145 16 C -0.206 4.206 17 O -0.496 6.496 18 C 0.090 3.910 19 C -0.209 4.209 20 C -0.202 4.202 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.725 -7.817 2.000 8.517 hybrid contribution 0.496 0.702 -0.905 1.248 sum -2.229 -7.116 1.095 7.537 Atomic orbital electron populations 1.22504 0.95046 1.01879 1.01511 1.22995 0.90719 0.89309 0.88053 1.22410 1.02286 0.94319 1.01267 1.94979 1.79146 1.51471 1.23603 1.32168 0.99175 0.55565 0.84031 1.22634 1.04196 0.99662 0.93534 1.21677 1.02751 0.88525 0.99072 1.20727 0.90960 1.01416 0.96388 1.30206 0.98068 0.95430 1.01977 1.68094 1.10450 1.13004 1.31907 0.86072 0.81388 0.81813 0.77751 1.14830 1.16999 1.15540 1.21965 1.02328 0.94151 0.96076 1.22758 1.06892 0.89710 1.01279 1.95015 1.67274 1.43106 1.44167 1.23031 0.91660 0.90924 0.85419 1.22492 0.98418 1.00886 0.99127 1.22398 0.99807 0.99172 0.98847 0.92315 0.92020 0.92354 0.92022 0.91734 0.92375 0.84900 0.87679 0.87699 0.90214 0.87188 0.86097 0.83974 0.88559 0.88122 0.87421 0.88028 0.92298 0.92089 0.92347 0.91738 0.92083 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 7.78 37.16 0.29 -0.26 16 2 C 0.15 0.96 1.57 -89.98 -0.14 0.82 16 3 C -0.15 -0.76 7.78 37.15 0.29 -0.47 16 4 O -0.55 -5.15 14.24 -59.50 -0.85 -6.00 16 5 C 0.31 -0.44 6.46 -26.73 -0.17 -0.61 16 6 C -0.16 0.32 5.65 -26.73 -0.15 0.17 16 7 C -0.08 0.41 5.06 -26.73 -0.14 0.28 16 8 C -0.08 0.43 2.94 -91.77 -0.27 0.15 16 9 C -0.01 0.02 3.95 -13.90 -0.05 -0.03 16 10 N -0.62 1.00 11.51 56.23 0.65 1.65 16 11 Si 0.91 -2.45 25.51 -169.99 -4.34 -6.78 16 12 H -0.23 0.49 6.22 56.52 0.35 0.84 16 13 H -0.25 0.21 7.11 56.52 0.40 0.61 16 14 H -0.23 0.64 7.11 56.52 0.40 1.04 16 15 C -0.11 0.69 4.90 -26.70 -0.13 0.56 16 16 C -0.17 0.51 4.64 -26.70 -0.12 0.39 16 17 O -0.56 -4.91 13.69 -59.50 -0.81 -5.72 16 18 C 0.15 0.93 1.57 -89.98 -0.14 0.79 16 19 C -0.15 -0.52 7.79 37.16 0.29 -0.23 16 20 C -0.14 -0.73 7.79 37.16 0.29 -0.44 16 21 H 0.06 0.12 6.90 -51.93 -0.36 -0.24 16 22 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.06 0.17 6.71 -51.92 -0.35 -0.17 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.40 6.71 -51.93 -0.35 0.06 16 26 H 0.06 0.18 6.91 -51.93 -0.36 -0.18 16 27 H 0.13 -0.64 8.14 -51.93 -0.42 -1.07 16 28 H 0.10 0.01 6.35 -51.93 -0.33 -0.32 16 29 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 -0.56 8.14 -51.93 -0.42 -0.99 16 31 H 0.11 -0.44 7.80 -51.93 -0.40 -0.85 16 32 H 0.12 -0.89 8.14 -51.93 -0.42 -1.31 16 33 H 0.34 -0.70 8.23 -40.82 -0.34 -1.03 16 34 H 0.10 -0.84 8.14 -51.93 -0.42 -1.26 16 35 H 0.10 -0.73 6.29 -51.93 -0.33 -1.06 16 36 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 37 H 0.10 -0.12 5.13 -51.93 -0.27 -0.39 16 38 H 0.06 0.11 6.85 -51.93 -0.36 -0.24 16 39 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.06 0.16 6.76 -51.93 -0.35 -0.19 16 41 H 0.06 0.40 6.77 -51.93 -0.35 0.05 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.18 6.85 -51.93 -0.36 -0.18 16 LS Contribution 322.94 15.07 4.87 4.87 Total: 0.00 -11.46 322.94 -8.21 -19.67 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -7.56 Total: -8.80 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.16 Total: 1.12 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: 0.65 Total: 1.65 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.66 Total: -11.72 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: -4.34 Total: -6.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -11.46 -8.21 -19.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.648 kcal (2) G-P(sol) polarization free energy of solvation -11.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds