Wall clock time and date at job start Mon Mar 30 2020 07:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 110.34929 * 2 1 4 4 O 1.44314 * 110.38960 * 122.30298 * 2 1 3 5 Xx 1.43464 * 104.66739 * 95.12772 * 4 2 1 6 5 C 1.56999 * 127.55897 * 219.56592 * 5 4 2 7 6 C 1.53006 * 109.47119 * 300.00060 * 6 5 4 8 7 C 1.52997 * 109.47198 * 179.97438 * 7 6 5 9 8 C 1.52998 * 109.47407 * 59.99564 * 8 7 6 10 9 C 1.50701 * 109.46752 * 60.00110 * 9 8 7 11 10 N 1.27939 * 120.00287 * 24.94134 * 10 9 8 12 11 Si 1.86797 * 119.99879 * 204.94141 * 10 9 8 13 12 H 1.48493 * 109.47187 * 60.00063 * 12 10 9 14 13 H 1.48503 * 109.47141 * 179.97438 * 12 10 9 15 14 H 1.48503 * 109.47407 * 299.99995 * 12 10 9 16 15 C 1.52995 * 109.47068 * 300.00130 * 9 8 7 17 16 C 1.52996 * 109.47292 * 179.97438 * 6 5 4 18 17 O 1.43471 * 104.88890 * 39.58523 * 5 4 2 19 18 C 1.44577 * 104.70917 * 320.45809 * 18 5 4 20 19 C 1.52999 * 110.42300 * 264.84071 * 19 18 5 21 20 C 1.52997 * 110.48028 * 142.36935 * 19 18 5 22 21 H 1.09002 * 109.47142 * 60.70596 * 1 2 3 23 22 H 1.08993 * 109.47083 * 300.69832 * 1 2 3 24 23 H 1.09007 * 109.47002 * 180.70095 * 1 2 3 25 24 H 1.08998 * 109.47492 * 59.29574 * 3 2 1 26 25 H 1.09004 * 109.47319 * 179.29852 * 3 2 1 27 26 H 1.09001 * 109.47318 * 299.29751 * 3 2 1 28 27 H 1.09005 * 109.47047 * 59.99531 * 6 5 4 29 28 H 1.09000 * 109.46975 * 300.00063 * 7 6 5 30 29 H 1.09005 * 109.47104 * 59.99674 * 7 6 5 31 30 H 1.09005 * 109.47065 * 299.99531 * 8 7 6 32 31 H 1.09002 * 109.47093 * 180.02562 * 8 7 6 33 32 H 1.09001 * 109.47276 * 179.97438 * 9 8 7 34 33 H 0.97005 * 120.00515 * 179.97438 * 11 10 9 35 34 H 1.08992 * 109.47649 * 299.99969 * 16 9 8 36 35 H 1.09005 * 109.46874 * 179.97438 * 16 9 8 37 36 H 1.08995 * 109.47188 * 299.99348 * 17 6 5 38 37 H 1.08992 * 109.47224 * 60.00452 * 17 6 5 39 38 H 1.09002 * 109.46948 * 175.14167 * 20 19 18 40 39 H 1.09003 * 109.47380 * 295.14040 * 20 19 18 41 40 H 1.08998 * 109.47187 * 55.14654 * 20 19 18 42 41 H 1.09001 * 109.47662 * 304.82728 * 21 19 18 43 42 H 1.09002 * 109.47349 * 64.82105 * 21 19 18 44 43 H 1.08995 * 109.47549 * 184.82241 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4344 0.0000 4 8 2.0328 -0.7229 1.1434 5 6 2.0006 -3.4069 1.3965 6 6 2.8105 -3.4532 2.6938 7 6 2.5419 -4.7751 3.4158 8 6 2.9543 -5.9411 2.5152 9 6 4.4229 -5.8331 2.1947 10 7 5.2064 -5.2056 2.9879 11 14 5.0993 -6.6155 0.6392 12 1 4.4291 -6.0218 -0.5454 13 1 6.5612 -6.3679 0.5559 14 1 4.8455 -8.0784 0.6701 15 6 2.1444 -5.8948 1.2180 16 6 2.4130 -4.5726 0.4954 17 8 2.8254 -1.8661 -0.6564 18 6 2.0674 -0.7725 -1.2219 19 6 0.9089 -1.3066 -2.0667 20 6 2.9732 0.1271 -2.0651 21 1 -0.3633 0.5028 -0.8963 22 1 -0.3633 0.5246 0.8836 23 1 -0.3633 -1.0277 0.0126 24 1 1.6965 1.9576 0.8836 25 1 3.1519 1.4178 0.0126 26 1 1.7169 1.9500 -0.8962 27 1 0.9384 -3.4854 1.6283 28 1 3.8726 -3.3746 2.4620 29 1 2.5162 -2.6227 3.3356 30 1 1.4797 -4.8531 3.6477 31 1 3.1185 -4.8078 4.3402 32 1 2.7634 -6.8829 3.0298 33 1 6.1518 -5.1364 2.7819 34 1 1.0823 -5.9729 1.4498 35 1 2.4386 -6.7253 0.5762 36 1 1.8356 -4.5395 -0.4285 37 1 3.4750 -4.4943 0.2633 38 1 0.2981 -0.4733 -2.4140 39 1 1.3051 -1.8492 -2.9251 40 1 0.2982 -1.9778 -1.4629 41 1 3.8149 0.4646 -1.4603 42 1 3.3442 -0.4330 -2.9235 43 1 2.4060 0.9906 -2.4125 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260273843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:28 Heat of formation + Delta-G solvation = 96.317247 kcal Electronic energy + Delta-G solvation = -20776.932397 eV Core-core repulsion = 17830.745919 eV Total energy + Delta-G solvation = -2946.186478 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.183 amu Computer time = 5.39 seconds Orbital eigenvalues (eV) -40.54026 -39.04046 -35.85918 -33.66078 -32.36606 -31.65144 -31.40931 -29.95111 -29.48996 -26.47549 -24.56882 -23.87400 -22.95368 -22.37563 -19.39821 -18.52004 -17.87767 -16.95159 -16.56005 -16.20658 -15.66325 -15.32198 -15.31788 -15.07816 -14.63836 -14.21542 -14.02284 -13.83813 -13.74626 -13.56677 -13.41311 -13.22228 -12.99613 -12.93645 -12.76246 -12.55584 -12.29796 -12.29200 -12.22972 -12.00762 -11.88579 -11.78187 -11.74460 -11.50332 -11.25419 -9.86693 -9.75873 -9.46628 -9.05847 -5.44570 -1.84904 0.80329 1.04568 1.32801 1.70076 1.84136 2.88437 2.96624 3.24443 3.43389 3.60288 3.66991 3.87151 3.94530 4.03005 4.09165 4.12418 4.20876 4.28504 4.34417 4.48697 4.56677 4.57716 4.59429 4.66872 4.73619 4.79808 4.80186 4.80542 4.86366 4.90116 5.01285 5.01451 5.02088 5.06880 5.11690 5.18720 5.19784 5.30432 5.42632 5.63151 6.17958 6.74413 6.81867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.139 3.861 3 C -0.148 4.148 4 O -0.650 6.650 5 C 0.374 3.626 6 C -0.170 4.170 7 C -0.071 4.071 8 C -0.078 4.078 9 C 0.000 4.000 10 N -0.646 5.646 11 Si 0.927 3.073 12 H -0.234 1.234 13 H -0.287 1.287 14 H -0.218 1.218 15 C -0.097 4.097 16 C -0.180 4.180 17 O -0.643 6.643 18 C 0.138 3.862 19 C -0.142 4.142 20 C -0.148 4.148 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.193 0.807 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.338 0.662 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.054 0.946 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -11.530 2.908 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 C -0.206 4.206 4 O -0.591 6.591 5 C 0.355 3.645 6 C -0.207 4.207 7 C -0.108 4.108 8 C -0.096 4.096 9 C -0.250 4.250 10 N -0.259 5.259 11 Si 0.747 3.253 12 H -0.157 1.157 13 H -0.212 1.212 14 H -0.140 1.140 15 C -0.134 4.134 16 C -0.217 4.217 17 O -0.585 6.585 18 C 0.081 3.919 19 C -0.199 4.199 20 C -0.205 4.205 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.210 0.790 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.142 0.858 31 H 0.125 0.875 32 H 0.180 0.820 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.792 -11.849 3.464 13.636 hybrid contribution 1.578 1.405 -1.079 2.372 sum -4.214 -10.445 2.385 11.513 Atomic orbital electron populations 1.22444 0.93402 1.02335 1.01792 1.22999 0.91662 0.88947 0.88103 1.22437 1.00549 0.96076 1.01516 1.94893 1.78306 1.58527 1.27422 1.32882 1.02729 0.46284 0.82651 1.22906 1.02792 1.01980 0.93066 1.21795 1.05548 0.85242 0.98179 1.20992 0.88656 1.02872 0.97091 1.30428 0.99629 0.94066 1.00845 1.68159 1.10599 1.14332 1.32827 0.85873 0.78976 0.82515 0.77984 1.15739 1.21223 1.13972 1.22198 1.05139 0.90895 0.95132 1.23150 1.06069 0.90365 1.02091 1.94932 1.70127 1.42756 1.50692 1.23060 0.92271 0.90652 0.85867 1.22425 0.97702 1.01316 0.98474 1.22424 0.99573 1.00010 0.98494 0.90956 0.92635 0.91607 0.92777 0.94425 0.90823 0.78990 0.90034 0.88342 0.85757 0.87493 0.82027 0.84524 0.83718 0.86121 0.86445 0.90095 0.90996 0.92560 0.91606 0.94494 0.92691 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 113. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.78 71.98 0.56 -0.68 16 2 C 0.14 2.30 1.57 -10.38 -0.02 2.28 16 3 C -0.15 -2.25 7.78 71.98 0.56 -1.69 16 4 O -0.65 -14.66 14.24 -125.77 -1.79 -16.45 16 5 C 0.37 -1.98 6.46 30.60 0.20 -1.79 16 6 C -0.17 0.98 5.65 30.60 0.17 1.16 16 7 C -0.07 1.05 5.06 30.59 0.15 1.21 16 8 C -0.08 1.28 2.94 -11.54 -0.03 1.24 16 9 C 0.00 0.00 3.95 88.68 0.35 0.35 16 10 N -0.65 2.20 11.51 24.11 0.28 2.48 16 11 Si 0.93 -5.41 25.51 68.60 1.75 -3.66 16 12 H -0.23 1.05 6.22 99.48 0.62 1.67 16 13 H -0.29 -0.23 7.11 99.48 0.71 0.48 16 14 H -0.22 1.72 7.11 99.48 0.71 2.43 16 15 C -0.10 1.84 4.90 30.61 0.15 1.99 16 16 C -0.18 1.62 4.64 30.61 0.14 1.76 16 17 O -0.64 -13.90 13.69 -125.77 -1.72 -15.62 16 18 C 0.14 2.22 1.57 -10.38 -0.02 2.21 16 19 C -0.14 -1.16 7.79 71.98 0.56 -0.60 16 20 C -0.15 -2.20 7.79 71.98 0.56 -1.64 16 21 H 0.07 0.35 6.90 -2.39 -0.02 0.33 16 22 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.06 0.39 6.71 -2.38 -0.02 0.38 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.04 0.71 6.71 -2.38 -0.02 0.70 16 26 H 0.07 0.72 6.91 -2.39 -0.02 0.71 16 27 H 0.19 -3.03 8.14 -2.38 -0.02 -3.05 16 28 H 0.08 0.07 6.35 -2.39 -0.02 0.05 16 29 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 30 H 0.12 -2.76 8.14 -2.38 -0.02 -2.78 16 31 H 0.11 -1.28 7.80 -2.39 -0.02 -1.30 16 32 H 0.16 -3.59 8.14 -2.39 -0.02 -3.61 16 33 H 0.34 -0.88 8.23 -92.70 -0.76 -1.64 16 34 H 0.14 -3.87 8.14 -2.39 -0.02 -3.89 16 35 H 0.12 -2.49 6.29 -2.38 -0.02 -2.51 16 36 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.08 -0.23 5.13 -2.39 -0.01 -0.24 16 38 H 0.07 0.33 6.85 -2.39 -0.02 0.31 16 39 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.37 6.76 -2.39 -0.02 0.35 16 41 H 0.04 0.70 6.77 -2.39 -0.02 0.68 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.71 6.85 -2.39 -0.02 0.70 16 Total: 0.00 -39.30 322.94 2.74 -36.56 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: 0.88 Total: -9.12 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 3.34 Total: 5.81 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: 0.28 Total: 2.48 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -3.51 Total: -32.07 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: 1.75 Total: -3.66 kcal Total: -39.30 2.74 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.878 kcal (2) G-P(sol) polarization free energy of solvation -39.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.39 seconds