Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.82411 * 2 1 4 4 H 1.08005 * 119.99802 * 239.26771 * 3 2 1 5 5 C 1.37881 * 119.99904 * 59.27397 * 3 2 1 6 6 N 1.31513 * 119.99695 * 182.74096 * 5 3 2 7 7 Si 1.86795 * 120.00319 * 2.74418 * 5 3 2 8 8 H 1.48501 * 109.46921 * 270.00323 * 7 5 3 9 9 H 1.48500 * 109.47051 * 30.00160 * 7 5 3 10 10 H 1.48499 * 109.47390 * 149.99843 * 7 5 3 11 11 C 1.54377 * 109.83369 * 239.10948 * 2 1 3 12 12 C 1.55305 * 102.25646 * 261.76074 * 11 2 1 13 13 C 1.54951 * 100.93534 * 325.86378 * 12 11 2 14 14 H 1.08998 * 110.30770 * 277.52864 * 13 12 11 15 15 C 1.53001 * 110.30746 * 155.46349 * 13 12 11 16 16 C 1.53012 * 109.47008 * 294.46885 * 15 13 12 17 17 C 1.52995 * 109.46400 * 164.04544 * 16 15 13 18 18 C 1.52987 * 109.50646 * 315.99181 * 17 16 15 19 19 C 1.53010 * 109.47087 * 112.93515 * 18 17 16 20 20 C 1.53005 * 109.42697 * 284.03909 * 19 18 17 21 21 C 1.52983 * 109.48695 * 75.96476 * 20 19 18 22 22 C 1.53002 * 109.50513 * 247.06282 * 21 20 19 23 23 O 1.43239 * 109.90263 * 120.93329 * 2 1 3 24 24 H 1.09007 * 109.46472 * 55.34041 * 1 2 3 25 25 H 1.08993 * 109.47555 * 175.33824 * 1 2 3 26 26 H 1.09000 * 109.47384 * 295.34538 * 1 2 3 27 27 H 0.96999 * 120.00147 * 354.98216 * 6 5 3 28 28 H 1.09009 * 110.84843 * 19.94688 * 11 2 1 29 29 H 1.08998 * 110.84909 * 143.35751 * 11 2 1 30 30 H 1.08994 * 111.12679 * 83.77818 * 12 11 2 31 31 H 1.09003 * 111.12416 * 207.95033 * 12 11 2 32 32 H 1.09002 * 109.47189 * 54.46707 * 15 13 12 33 33 H 1.08999 * 109.47173 * 284.04311 * 16 15 13 34 34 H 1.08999 * 109.47508 * 44.05042 * 16 15 13 35 35 H 1.08998 * 109.46568 * 195.97594 * 17 16 15 36 36 H 1.09000 * 109.45309 * 75.99224 * 17 16 15 37 37 H 1.08999 * 109.47311 * 352.92727 * 18 17 16 38 38 H 1.09001 * 109.46569 * 232.93464 * 18 17 16 39 39 H 1.08991 * 109.47517 * 164.05390 * 19 18 17 40 40 H 1.08998 * 109.48139 * 44.02877 * 19 18 17 41 41 H 1.08994 * 109.47344 * 315.95563 * 20 19 18 42 42 H 1.09004 * 109.46101 * 195.96619 * 20 19 18 43 43 H 1.09000 * 109.46600 * 127.05072 * 21 20 19 44 44 H 1.09002 * 109.45790 * 7.06517 * 21 20 19 45 45 H 1.09004 * 109.46741 * 284.01333 * 22 21 20 46 46 H 1.09000 * 109.47374 * 164.00597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6739 1.7636 -0.8040 5 6 1.7009 2.2731 1.0265 6 7 2.1022 3.5252 0.9992 7 14 0.6702 1.6536 2.4559 8 1 -0.7696 1.8483 2.1489 9 1 0.9396 0.2092 2.6710 10 1 1.0213 2.4108 3.6841 11 6 2.0538 -0.7456 -1.2462 12 6 2.3702 -2.1558 -0.6779 13 6 2.8435 -1.7967 0.7532 14 1 3.8923 -1.5002 0.7416 15 6 2.6390 -2.9857 1.6941 16 6 1.1423 -3.2658 1.8443 17 6 0.9420 -4.6601 2.4415 18 6 1.8841 -5.6503 1.7543 19 6 2.9305 -6.1392 2.7578 20 6 3.9780 -5.0451 2.9744 21 6 3.3953 -3.9509 3.8708 22 6 3.2370 -2.6603 3.0644 23 8 2.0176 -0.6923 1.1553 24 1 -0.3632 0.5845 -0.8454 25 1 -0.3634 -1.0242 -0.0835 26 1 -0.3634 0.4399 0.9287 27 1 2.6972 3.8286 0.2957 28 1 1.2846 -0.8015 -2.0166 29 1 2.9542 -0.2688 -1.6335 30 1 1.4760 -2.7784 -0.6512 31 1 3.1660 -2.6385 -1.2452 32 1 3.1336 -3.8649 1.2813 33 1 0.6975 -2.5207 2.5039 34 1 0.6636 -3.2173 0.8662 35 1 -0.0903 -4.9754 2.2895 36 1 1.1600 -4.6324 3.5091 37 1 2.3831 -5.1578 0.9197 38 1 1.3106 -6.5002 1.3842 39 1 3.4154 -7.0349 2.3700 40 1 2.4449 -6.3702 3.7059 41 1 4.2590 -4.6156 2.0128 42 1 4.8588 -5.4750 3.4515 43 1 4.0666 -3.7741 4.7112 44 1 2.4215 -4.2677 4.2441 45 1 4.2124 -2.1919 2.9334 46 1 2.5747 -1.9779 3.5972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379760857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = -57.926841 kcal Electronic energy + Delta-G solvation = -22653.978916 eV Core-core repulsion = 19736.022345 eV Total energy + Delta-G solvation = -2917.956570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85351 -38.05558 -33.71291 -32.69128 -32.28305 -31.19528 -30.11490 -27.04654 -25.78349 -24.77418 -23.45397 -21.76612 -21.19628 -20.31795 -19.28772 -18.59657 -17.24636 -15.88333 -15.66614 -14.96655 -14.18273 -14.03059 -13.98987 -13.74356 -13.62771 -13.14289 -13.02445 -12.59435 -12.36608 -12.21389 -11.79032 -11.67821 -11.41780 -11.28087 -11.07006 -10.99610 -10.82014 -10.70677 -10.59895 -10.38665 -10.23468 -9.96861 -9.91504 -9.78609 -9.60786 -9.41369 -9.01690 -8.90482 -8.39597 -8.01684 -6.34802 -4.11497 3.51158 3.64849 3.92984 4.64868 4.65558 4.85716 4.90483 4.92776 5.18385 5.20657 5.28814 5.34842 5.43040 5.44606 5.49522 5.55117 5.69738 5.74455 5.81422 5.93177 5.99704 6.01245 6.08549 6.11372 6.14937 6.17046 6.20064 6.26701 6.30738 6.36281 6.47790 6.53105 6.55117 6.60030 6.61063 6.61780 6.71972 6.77845 6.80287 6.92008 6.95681 7.41633 8.10795 8.32285 8.49977 8.97176 9.66634 11.01680 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.006658 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.144679 B = 4204.144138 C = 4497.532164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 C -0.595 4.595 4 H 0.056 0.944 5 C 0.040 3.960 6 N -0.911 5.911 7 Si 1.050 2.950 8 H -0.298 1.298 9 H -0.234 1.234 10 H -0.303 1.303 11 C -0.129 4.129 12 C -0.156 4.156 13 C 0.081 3.919 14 H 0.052 0.948 15 C -0.098 4.098 16 C -0.108 4.108 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.110 4.110 23 O -0.364 6.364 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -18.903 2.198 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.156 3.844 3 C -0.633 4.633 4 H 0.074 0.926 5 C -0.165 4.165 6 N -0.546 5.546 7 Si 0.881 3.119 8 H -0.226 1.226 9 H -0.158 1.158 10 H -0.231 1.231 11 C -0.167 4.167 12 C -0.193 4.193 13 C 0.023 3.977 14 H 0.070 0.930 15 C -0.116 4.116 16 C -0.145 4.145 17 C -0.165 4.165 18 C -0.165 4.165 19 C -0.155 4.155 20 C -0.165 4.165 21 C -0.164 4.164 22 C -0.148 4.148 23 O -0.285 6.285 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.452 -18.375 3.781 18.765 hybrid contribution 0.881 -0.293 -1.801 2.026 sum 0.428 -18.668 1.980 18.778 Atomic orbital electron populations 1.22252 0.97964 0.98754 1.01171 1.19989 0.90172 0.92276 0.81920 1.22237 1.35689 0.94720 1.10629 0.92625 1.25878 0.97272 0.93410 0.99915 1.70867 1.32160 1.15708 1.35852 0.84159 0.74498 0.78032 0.75207 1.22637 1.15808 1.23120 1.23003 1.00846 0.93904 0.98942 1.23327 1.00749 0.98044 0.97219 1.22802 0.95207 0.87990 0.91705 0.92986 1.21800 0.96509 0.97562 0.95712 1.21594 0.96066 0.95622 1.01224 1.21899 0.98439 0.95545 1.00653 1.21824 0.97264 0.98518 0.98886 1.21695 0.96853 0.97614 0.99294 1.21822 0.97683 0.96162 1.00838 1.21882 1.00995 0.95597 0.97961 1.21599 1.01024 0.96490 0.95638 1.88798 1.65976 1.41592 1.32087 0.92527 0.94967 0.93508 0.92549 0.92291 0.91724 0.91161 0.92054 0.89145 0.91306 0.92144 0.92915 0.91225 0.90820 0.92912 0.92766 0.92165 0.90833 0.92863 0.92831 0.91185 0.92388 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.20 37.16 0.30 -2.87 16 2 C 0.19 4.58 0.78 -91.05 -0.07 4.51 16 3 C -0.60 -16.97 8.69 -34.44 -0.30 -17.26 16 4 H 0.06 1.70 7.75 -52.48 -0.41 1.29 16 5 C 0.04 1.20 5.44 -17.82 -0.10 1.10 16 6 N -0.91 -28.84 13.70 55.43 0.76 -28.09 16 7 Si 1.05 26.90 24.38 -169.99 -4.14 22.76 16 8 H -0.30 -7.34 6.84 56.52 0.39 -6.96 16 9 H -0.23 -5.59 5.30 56.52 0.30 -5.29 16 10 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 11 C -0.13 -2.60 6.07 -24.79 -0.15 -2.75 16 12 C -0.16 -2.61 6.45 -24.48 -0.16 -2.77 16 13 C 0.08 1.49 3.08 -25.70 -0.08 1.41 16 14 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 15 C -0.10 -1.45 1.48 -90.61 -0.13 -1.59 16 16 C -0.11 -1.57 4.49 -26.73 -0.12 -1.69 16 17 C -0.13 -1.50 5.48 -26.74 -0.15 -1.65 16 18 C -0.13 -1.34 5.47 -26.73 -0.15 -1.48 16 19 C -0.12 -1.13 5.59 -26.72 -0.15 -1.28 16 20 C -0.13 -1.35 5.47 -26.74 -0.15 -1.49 16 21 C -0.13 -1.50 5.48 -26.74 -0.15 -1.65 16 22 C -0.11 -1.63 4.97 -26.73 -0.13 -1.76 16 23 O -0.36 -8.24 6.46 -35.23 -0.23 -8.47 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.08 3.50 -51.93 -0.18 0.89 16 27 H 0.26 8.30 8.72 -40.82 -0.36 7.94 16 28 H 0.06 1.10 7.82 -51.92 -0.41 0.69 16 29 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 30 H 0.07 1.10 6.10 -51.93 -0.32 0.78 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.19 2.83 -51.93 -0.15 1.04 16 33 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 34 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.80 4.69 -51.93 -0.24 0.56 16 37 H 0.07 0.82 5.47 -51.93 -0.28 0.54 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.56 7.47 -51.93 -0.39 0.18 16 41 H 0.07 0.83 5.47 -51.93 -0.28 0.54 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.81 4.69 -51.93 -0.24 0.57 16 45 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16 46 H 0.07 1.14 7.82 -51.93 -0.41 0.74 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -30.44 315.79 -8.43 -38.87 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.90 Total: 1.40 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: -1.67 Total: -31.23 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: 0.76 Total: -28.09 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.23 Total: -8.47 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.14 Total: 22.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.44 -8.43 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379760857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.060 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds