Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.82411 * 2 1 4 4 H 1.08005 * 119.99802 * 239.26771 * 3 2 1 5 5 C 1.37881 * 119.99904 * 59.27397 * 3 2 1 6 6 N 1.31513 * 119.99695 * 182.74096 * 5 3 2 7 7 Si 1.86795 * 120.00319 * 2.74418 * 5 3 2 8 8 H 1.48501 * 109.46921 * 270.00323 * 7 5 3 9 9 H 1.48500 * 109.47051 * 30.00160 * 7 5 3 10 10 H 1.48499 * 109.47390 * 149.99843 * 7 5 3 11 11 C 1.54377 * 109.83369 * 239.10948 * 2 1 3 12 12 C 1.55305 * 102.25646 * 261.76074 * 11 2 1 13 13 C 1.54951 * 100.93534 * 325.86378 * 12 11 2 14 14 H 1.08998 * 110.30770 * 277.52864 * 13 12 11 15 15 C 1.53001 * 110.30746 * 155.46349 * 13 12 11 16 16 C 1.53012 * 109.47008 * 294.46885 * 15 13 12 17 17 C 1.52995 * 109.46400 * 164.04544 * 16 15 13 18 18 C 1.52987 * 109.50646 * 315.99181 * 17 16 15 19 19 C 1.53010 * 109.47087 * 112.93515 * 18 17 16 20 20 C 1.53005 * 109.42697 * 284.03909 * 19 18 17 21 21 C 1.52983 * 109.48695 * 75.96476 * 20 19 18 22 22 C 1.53002 * 109.50513 * 247.06282 * 21 20 19 23 23 O 1.43239 * 109.90263 * 120.93329 * 2 1 3 24 24 H 1.09007 * 109.46472 * 55.34041 * 1 2 3 25 25 H 1.08993 * 109.47555 * 175.33824 * 1 2 3 26 26 H 1.09000 * 109.47384 * 295.34538 * 1 2 3 27 27 H 0.96999 * 120.00147 * 354.98216 * 6 5 3 28 28 H 1.09009 * 110.84843 * 19.94688 * 11 2 1 29 29 H 1.08998 * 110.84909 * 143.35751 * 11 2 1 30 30 H 1.08994 * 111.12679 * 83.77818 * 12 11 2 31 31 H 1.09003 * 111.12416 * 207.95033 * 12 11 2 32 32 H 1.09002 * 109.47189 * 54.46707 * 15 13 12 33 33 H 1.08999 * 109.47173 * 284.04311 * 16 15 13 34 34 H 1.08999 * 109.47508 * 44.05042 * 16 15 13 35 35 H 1.08998 * 109.46568 * 195.97594 * 17 16 15 36 36 H 1.09000 * 109.45309 * 75.99224 * 17 16 15 37 37 H 1.08999 * 109.47311 * 352.92727 * 18 17 16 38 38 H 1.09001 * 109.46569 * 232.93464 * 18 17 16 39 39 H 1.08991 * 109.47517 * 164.05390 * 19 18 17 40 40 H 1.08998 * 109.48139 * 44.02877 * 19 18 17 41 41 H 1.08994 * 109.47344 * 315.95563 * 20 19 18 42 42 H 1.09004 * 109.46101 * 195.96619 * 20 19 18 43 43 H 1.09000 * 109.46600 * 127.05072 * 21 20 19 44 44 H 1.09002 * 109.45790 * 7.06517 * 21 20 19 45 45 H 1.09004 * 109.46741 * 284.01333 * 22 21 20 46 46 H 1.09000 * 109.47374 * 164.00597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6739 1.7636 -0.8040 5 6 1.7009 2.2731 1.0265 6 7 2.1022 3.5252 0.9992 7 14 0.6702 1.6536 2.4559 8 1 -0.7696 1.8483 2.1489 9 1 0.9396 0.2092 2.6710 10 1 1.0213 2.4108 3.6841 11 6 2.0538 -0.7456 -1.2462 12 6 2.3702 -2.1558 -0.6779 13 6 2.8435 -1.7967 0.7532 14 1 3.8923 -1.5002 0.7416 15 6 2.6390 -2.9857 1.6941 16 6 1.1423 -3.2658 1.8443 17 6 0.9420 -4.6601 2.4415 18 6 1.8841 -5.6503 1.7543 19 6 2.9305 -6.1392 2.7578 20 6 3.9780 -5.0451 2.9744 21 6 3.3953 -3.9509 3.8708 22 6 3.2370 -2.6603 3.0644 23 8 2.0176 -0.6923 1.1553 24 1 -0.3632 0.5845 -0.8454 25 1 -0.3634 -1.0242 -0.0835 26 1 -0.3634 0.4399 0.9287 27 1 2.6972 3.8286 0.2957 28 1 1.2846 -0.8015 -2.0166 29 1 2.9542 -0.2688 -1.6335 30 1 1.4760 -2.7784 -0.6512 31 1 3.1660 -2.6385 -1.2452 32 1 3.1336 -3.8649 1.2813 33 1 0.6975 -2.5207 2.5039 34 1 0.6636 -3.2173 0.8662 35 1 -0.0903 -4.9754 2.2895 36 1 1.1600 -4.6324 3.5091 37 1 2.3831 -5.1578 0.9197 38 1 1.3106 -6.5002 1.3842 39 1 3.4154 -7.0349 2.3700 40 1 2.4449 -6.3702 3.7059 41 1 4.2590 -4.6156 2.0128 42 1 4.8588 -5.4750 3.4515 43 1 4.0666 -3.7741 4.7112 44 1 2.4215 -4.2677 4.2441 45 1 4.2124 -2.1919 2.9334 46 1 2.5747 -1.9779 3.5972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379760857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = -75.064698 kcal Electronic energy + Delta-G solvation = -22654.722069 eV Core-core repulsion = 19736.022345 eV Total energy + Delta-G solvation = -2918.699724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14940 -39.42365 -35.35859 -33.98594 -33.65172 -32.87298 -31.68837 -28.30032 -26.94317 -26.62013 -24.95920 -22.88604 -22.36131 -21.41217 -21.06893 -19.83078 -19.32351 -17.29418 -16.95545 -16.20181 -15.70881 -15.54157 -15.30706 -14.94248 -14.88737 -14.74273 -14.30452 -14.05664 -13.79089 -13.69772 -13.35794 -13.04327 -12.70994 -12.68481 -12.56625 -12.19515 -12.09622 -11.89018 -11.82471 -11.80106 -11.57777 -11.43542 -11.32190 -11.05610 -11.03629 -10.86530 -10.62865 -10.57388 -10.40162 -9.89086 -8.69848 -6.47877 1.42685 1.57056 1.89813 2.50956 3.02473 3.41866 3.78939 3.86794 3.89306 4.03574 4.17831 4.26536 4.32121 4.33830 4.35715 4.41571 4.45736 4.51203 4.62140 4.67712 4.78412 4.80004 4.87939 4.90327 5.00477 5.04121 5.06399 5.10510 5.15496 5.18457 5.21383 5.27489 5.31925 5.37785 5.39548 5.42465 5.51201 5.58914 5.61109 5.67829 5.77805 5.80722 5.94736 6.05155 6.42118 6.88217 7.38920 8.64013 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.006658 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.144679 B = 4204.144138 C = 4497.532164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 C -0.595 4.595 4 H 0.017 0.983 5 C -0.011 4.011 6 N -0.948 5.948 7 Si 1.087 2.913 8 H -0.280 1.280 9 H -0.210 1.210 10 H -0.314 1.314 11 C -0.131 4.131 12 C -0.139 4.139 13 C 0.068 3.932 14 H 0.034 0.966 15 C -0.088 4.088 16 C -0.106 4.106 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.111 4.111 23 O -0.381 6.381 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.250 0.750 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -23.053 2.423 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.149 3.851 3 C -0.633 4.633 4 H 0.035 0.965 5 C -0.209 4.209 6 N -0.586 5.586 7 Si 0.913 3.087 8 H -0.207 1.207 9 H -0.133 1.133 10 H -0.243 1.243 11 C -0.169 4.169 12 C -0.176 4.176 13 C 0.011 3.989 14 H 0.052 0.948 15 C -0.106 4.106 16 C -0.143 4.143 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.149 4.149 23 O -0.302 6.302 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.407 -22.547 3.981 22.939 hybrid contribution 1.288 1.014 -1.939 2.539 sum -0.119 -21.533 2.043 21.630 Atomic orbital electron populations 1.22178 0.96353 1.00898 1.00542 1.19918 0.91356 0.89923 0.83908 1.22570 1.33983 0.97995 1.08751 0.96503 1.27140 0.98238 0.93100 1.02382 1.70975 1.34073 1.17295 1.36246 0.83748 0.74225 0.78699 0.72064 1.20710 1.13346 1.24342 1.22944 1.00357 0.95583 0.98003 1.23282 1.02554 0.96202 0.95538 1.23101 0.93683 0.88029 0.94129 0.94850 1.21794 0.97407 0.96557 0.94796 1.21552 0.95104 0.96855 1.00812 1.21860 0.99519 0.93972 1.00673 1.21811 0.97258 0.98564 0.98692 1.21684 0.96360 0.97613 0.99500 1.21808 0.98476 0.95952 1.00125 1.21841 1.01676 0.94403 0.97917 1.21585 0.99594 0.97657 0.96074 1.88699 1.66600 1.43130 1.31804 0.92703 0.91386 0.94569 0.94084 0.90435 0.93902 0.88914 0.89386 0.86618 0.93834 0.92190 0.91977 0.91065 0.91281 0.91458 0.91312 0.91582 0.91495 0.91718 0.92408 0.90556 0.93748 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.20 71.98 0.59 -5.42 16 2 C 0.19 8.73 0.78 -11.07 -0.01 8.72 16 3 C -0.60 -35.06 8.69 25.60 0.22 -34.83 16 4 H 0.02 1.08 7.75 -2.91 -0.02 1.06 16 5 C -0.01 -0.68 5.44 84.66 0.46 -0.22 16 6 N -0.95 -62.72 13.70 21.45 0.29 -62.43 16 7 Si 1.09 55.22 24.38 68.60 1.67 56.89 16 8 H -0.28 -13.28 6.84 99.48 0.68 -12.60 16 9 H -0.21 -9.80 5.30 99.48 0.53 -9.27 16 10 H -0.31 -16.41 7.11 99.48 0.71 -15.70 16 11 C -0.13 -5.10 6.07 31.85 0.19 -4.91 16 12 C -0.14 -4.22 6.45 32.05 0.21 -4.01 16 13 C 0.07 2.41 3.08 31.26 0.10 2.51 16 14 H 0.03 1.29 8.04 -2.39 -0.02 1.28 16 15 C -0.09 -2.41 1.48 -10.79 -0.02 -2.43 16 16 C -0.11 -2.78 4.49 30.60 0.14 -2.64 16 17 C -0.12 -2.42 5.48 30.59 0.17 -2.26 16 18 C -0.13 -2.07 5.47 30.59 0.17 -1.90 16 19 C -0.11 -1.70 5.59 30.60 0.17 -1.53 16 20 C -0.13 -2.23 5.47 30.59 0.17 -2.06 16 21 C -0.12 -2.58 5.48 30.59 0.17 -2.41 16 22 C -0.11 -3.18 4.97 30.60 0.15 -3.03 16 23 O -0.38 -17.02 6.46 -148.98 -0.96 -17.98 16 24 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.59 3.50 -2.39 -0.01 1.58 16 27 H 0.25 16.66 8.72 -92.71 -0.81 15.85 16 28 H 0.08 2.71 7.82 -2.38 -0.02 2.69 16 29 H 0.04 1.82 7.65 -2.39 -0.02 1.80 16 30 H 0.09 2.46 6.10 -2.39 -0.01 2.44 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.12 2.64 2.83 -2.39 -0.01 2.63 16 33 H 0.04 1.36 7.74 -2.39 -0.02 1.34 16 34 H 0.06 1.57 6.01 -2.39 -0.01 1.56 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.39 4.69 -2.39 -0.01 1.38 16 37 H 0.07 1.21 5.47 -2.39 -0.01 1.20 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.94 7.47 -2.39 -0.02 0.93 16 41 H 0.07 1.28 5.47 -2.39 -0.01 1.26 16 42 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.55 4.69 -2.39 -0.01 1.53 16 45 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 46 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 Total: -1.00 -68.95 315.79 4.58 -64.36 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.71 Total: 15.57 kcal Atomic # 6 Polarization: -59.29 SS G_CDS: 2.88 Total: -56.42 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.29 Total: -62.43 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.96 Total: -17.98 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.67 Total: 56.89 kcal Total: -68.95 4.58 -64.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379760857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.701 kcal (2) G-P(sol) polarization free energy of solvation -68.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds