Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47019 * 240.00111 * 3 2 1 5 5 H 1.48498 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46867 * 120.00044 * 3 2 1 7 7 C 1.37876 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99918 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.48643 * 300.02738 * 9 7 2 11 11 C 1.53087 * 109.48119 * 180.02562 * 9 7 2 12 12 C 1.53174 * 109.16688 * 182.40696 * 11 9 7 13 13 C 1.53177 * 109.03603 * 56.97628 * 12 11 9 14 14 C 1.53095 * 109.16413 * 303.02476 * 13 12 11 15 15 H 1.08999 * 109.47789 * 297.61336 * 14 13 12 16 16 C 1.52997 * 109.47839 * 177.59036 * 14 13 12 17 17 C 1.53014 * 109.47759 * 60.00711 * 16 14 13 18 18 C 1.52989 * 109.46427 * 195.94329 * 17 16 14 19 19 C 1.52986 * 109.49945 * 44.01349 * 18 17 16 20 20 C 1.53004 * 109.47500 * 247.06668 * 19 18 17 21 21 C 1.52996 * 109.43319 * 75.95390 * 20 19 18 22 22 C 1.52990 * 109.48080 * 284.03735 * 21 20 19 23 23 C 1.52995 * 109.49779 * 112.93900 * 22 21 20 24 24 O 1.42896 * 109.48312 * 60.05809 * 9 7 2 25 25 H 0.96994 * 120.00732 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.52338 * 62.49818 * 11 9 7 27 27 H 1.09003 * 109.57412 * 302.34643 * 11 9 7 28 28 H 1.09005 * 109.54258 * 297.10987 * 12 11 9 29 29 H 1.08998 * 109.62024 * 176.89408 * 12 11 9 30 30 H 1.09001 * 109.52596 * 183.11609 * 13 12 11 31 31 H 1.09004 * 109.57173 * 62.96243 * 13 12 11 32 32 H 1.09002 * 109.47539 * 300.00069 * 16 14 13 33 33 H 1.09000 * 109.47038 * 75.94361 * 17 16 14 34 34 H 1.08997 * 109.46767 * 315.94093 * 17 16 14 35 35 H 1.08998 * 109.46581 * 284.00255 * 18 17 16 36 36 H 1.09002 * 109.46211 * 164.01735 * 18 17 16 37 37 H 1.08994 * 109.46928 * 7.07231 * 19 18 17 38 38 H 1.08998 * 109.46908 * 127.06704 * 19 18 17 39 39 H 1.09004 * 109.47316 * 195.94217 * 20 19 18 40 40 H 1.09000 * 109.47889 * 315.95954 * 20 19 18 41 41 H 1.09001 * 109.47197 * 44.04240 * 21 20 19 42 42 H 1.09005 * 109.47241 * 164.03276 * 21 20 19 43 43 H 1.08996 * 109.46697 * 232.95193 * 22 21 20 44 44 H 1.08995 * 109.46219 * 352.93480 * 22 21 20 45 45 H 1.08999 * 109.47328 * 75.99202 * 23 22 21 46 46 H 1.08991 * 109.47168 * 196.00172 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6236 -2.5576 0.8877 11 6 2.2457 -3.6629 -0.0015 12 6 1.4736 -4.9844 -0.0634 13 6 0.5804 -4.9833 -1.3078 14 6 -0.3500 -3.7685 -1.2576 15 1 -0.9988 -3.8434 -0.3850 16 6 -1.2039 -3.7270 -2.5264 17 6 -2.0394 -5.0054 -2.6210 18 6 -2.5792 -5.1575 -4.0444 19 6 -1.4684 -4.8424 -5.0481 20 6 -1.8148 -3.5594 -5.8063 21 6 -1.5626 -2.3505 -4.9031 22 6 -2.6896 -2.2381 -3.8746 23 6 -2.1337 -2.5128 -2.4759 24 8 0.4309 -2.5750 -1.1694 25 1 -0.4851 0.8399 -0.0004 26 1 2.8423 -3.6320 0.9103 27 1 2.9013 -3.5831 -0.8686 28 1 0.8559 -5.0879 0.8287 29 1 2.1757 -5.8162 -0.1192 30 1 -0.0141 -5.8966 -1.3304 31 1 1.2008 -4.9303 -2.2025 32 1 -0.5549 -3.6517 -3.3989 33 1 -2.8727 -4.9475 -1.9207 34 1 -1.4168 -5.8654 -2.3747 35 1 -3.4099 -4.4677 -4.1935 36 1 -2.9249 -6.1803 -4.1944 37 1 -0.5263 -4.7074 -4.5169 38 1 -1.3723 -5.6671 -5.7544 39 1 -1.1912 -3.4841 -6.6971 40 1 -2.8647 -3.5821 -6.0985 41 1 -0.6107 -2.4750 -4.3869 42 1 -1.5316 -1.4447 -5.5087 43 1 -3.1119 -1.2338 -3.9069 44 1 -3.4666 -2.9664 -4.1062 45 1 -1.5765 -1.6427 -2.1289 46 1 -2.9572 -2.7140 -1.7908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379846992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = -73.644508 kcal Electronic energy + Delta-G solvation = -22411.309415 eV Core-core repulsion = 19492.671276 eV Total energy + Delta-G solvation = -2918.638140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.54272 -37.55395 -33.54836 -32.72374 -32.36813 -31.98890 -29.67018 -26.66379 -25.66755 -24.89909 -22.57351 -21.77905 -21.25076 -20.17833 -19.16337 -18.57285 -16.55405 -15.57727 -15.26236 -14.59046 -14.33482 -14.25881 -13.79887 -13.73711 -13.50500 -13.18407 -12.92525 -12.66321 -12.33777 -12.15113 -11.78552 -11.50103 -11.09461 -11.02251 -10.90531 -10.71370 -10.66580 -10.54472 -10.53208 -10.44115 -10.20720 -10.14453 -10.04759 -9.77115 -9.40189 -9.26227 -9.21050 -8.76596 -8.41094 -7.74920 -5.96208 -4.07767 3.34664 3.39078 3.41810 4.45346 4.86375 4.89668 5.07061 5.17937 5.35687 5.39947 5.45520 5.53156 5.57960 5.62857 5.67023 5.73690 5.83095 5.90332 5.96004 6.04545 6.08764 6.16806 6.21601 6.25067 6.29596 6.35932 6.38424 6.42227 6.45029 6.47056 6.57194 6.64045 6.69291 6.72534 6.77844 6.87510 6.92166 6.97846 7.00953 7.16337 7.33371 7.58629 7.94608 8.35658 8.85155 9.23541 9.62061 11.11073 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.006889 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.292128 B = 4063.733982 C = 5006.053189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.221 3.779 10 H 0.010 0.990 11 C -0.143 4.143 12 C -0.121 4.121 13 C -0.146 4.146 14 C 0.090 3.910 15 H 0.034 0.966 16 C -0.089 4.089 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.112 4.112 24 O -0.349 6.349 25 H 0.260 0.740 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -9.294 -7.537 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.166 3.834 10 H 0.028 0.972 11 C -0.181 4.181 12 C -0.158 4.158 13 C -0.184 4.184 14 C 0.031 3.969 15 H 0.052 0.948 16 C -0.107 4.107 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.149 4.149 24 O -0.268 6.268 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.147 -9.033 -7.668 12.918 hybrid contribution 0.442 0.616 0.236 0.794 sum -4.704 -8.417 -7.432 12.174 Atomic orbital electron populations 1.70015 1.05873 1.26389 1.47122 1.25025 0.94762 0.98996 0.93796 0.86740 0.79766 0.83260 0.78641 1.20154 1.21246 1.20231 1.20956 0.92559 0.89820 1.53046 0.92094 1.19625 0.87034 0.91808 0.84966 0.97191 1.22252 0.99636 0.95441 1.00812 1.21612 0.98337 0.98210 0.97655 1.22261 0.98764 0.98986 0.98399 1.21770 0.91889 0.87137 0.96127 0.94770 1.21564 0.96470 0.94025 0.98656 1.21754 0.99339 0.98107 0.96219 1.21822 0.98641 1.00529 0.95086 1.21827 1.00002 0.96926 0.97821 1.21685 1.00673 0.95177 0.97779 1.21834 1.00671 0.96993 0.97214 1.21809 0.97704 1.00515 0.95835 1.21604 0.98332 0.99842 0.95169 1.88305 1.57593 1.35335 1.45599 0.93066 0.92767 0.92665 0.92917 0.93465 0.92570 0.92166 0.88935 0.92468 0.92035 0.91059 0.93062 0.90511 0.93053 0.92825 0.92455 0.89997 0.92972 0.93048 0.92044 0.88940 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 12.84 55.43 0.71 -24.19 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.83 8.79 -34.44 -0.30 -15.13 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.22 5.73 2.50 -27.84 -0.07 5.66 16 10 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 11 C -0.14 -3.10 5.36 -26.60 -0.14 -3.24 16 12 C -0.12 -2.19 6.03 -26.55 -0.16 -2.35 16 13 C -0.15 -2.58 5.04 -26.59 -0.13 -2.71 16 14 C 0.09 1.81 2.22 -26.68 -0.06 1.75 16 15 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 16 C -0.09 -1.52 1.39 -90.60 -0.13 -1.65 16 17 C -0.12 -1.63 5.00 -26.73 -0.13 -1.76 16 18 C -0.12 -1.50 5.48 -26.74 -0.15 -1.64 16 19 C -0.13 -1.56 5.47 -26.74 -0.15 -1.71 16 20 C -0.12 -1.40 5.59 -26.73 -0.15 -1.55 16 21 C -0.13 -1.89 5.47 -26.74 -0.15 -2.03 16 22 C -0.12 -1.82 5.48 -26.74 -0.15 -1.97 16 23 C -0.11 -2.01 5.04 -26.72 -0.13 -2.15 16 24 O -0.35 -8.79 8.54 -35.23 -0.30 -9.09 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.85 6.25 -51.93 -0.32 0.53 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.60 2.83 -51.93 -0.15 1.45 16 33 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 34 H 0.06 0.83 5.80 -51.93 -0.30 0.53 16 35 H 0.07 0.86 4.69 -51.93 -0.24 0.62 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.05 5.47 -51.93 -0.28 0.76 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 41 H 0.08 1.38 5.47 -51.93 -0.28 1.09 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.82 4.69 -51.93 -0.24 0.58 16 45 H 0.09 2.09 7.28 -51.93 -0.38 1.71 16 46 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -28.54 325.85 -9.81 -38.36 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.02 Total: 1.95 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.09 Total: -28.32 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.71 Total: -24.19 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.30 Total: -9.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.54 -9.81 -38.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379846992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.288 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds