Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47019 * 240.00111 * 3 2 1 5 5 H 1.48498 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46867 * 120.00044 * 3 2 1 7 7 C 1.37876 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99918 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.48643 * 300.02738 * 9 7 2 11 11 C 1.53087 * 109.48119 * 180.02562 * 9 7 2 12 12 C 1.53174 * 109.16688 * 182.40696 * 11 9 7 13 13 C 1.53177 * 109.03603 * 56.97628 * 12 11 9 14 14 C 1.53095 * 109.16413 * 303.02476 * 13 12 11 15 15 H 1.08999 * 109.47789 * 297.61336 * 14 13 12 16 16 C 1.52997 * 109.47839 * 177.59036 * 14 13 12 17 17 C 1.53014 * 109.47759 * 60.00711 * 16 14 13 18 18 C 1.52989 * 109.46427 * 195.94329 * 17 16 14 19 19 C 1.52986 * 109.49945 * 44.01349 * 18 17 16 20 20 C 1.53004 * 109.47500 * 247.06668 * 19 18 17 21 21 C 1.52996 * 109.43319 * 75.95390 * 20 19 18 22 22 C 1.52990 * 109.48080 * 284.03735 * 21 20 19 23 23 C 1.52995 * 109.49779 * 112.93900 * 22 21 20 24 24 O 1.42896 * 109.48312 * 60.05809 * 9 7 2 25 25 H 0.96994 * 120.00732 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.52338 * 62.49818 * 11 9 7 27 27 H 1.09003 * 109.57412 * 302.34643 * 11 9 7 28 28 H 1.09005 * 109.54258 * 297.10987 * 12 11 9 29 29 H 1.08998 * 109.62024 * 176.89408 * 12 11 9 30 30 H 1.09001 * 109.52596 * 183.11609 * 13 12 11 31 31 H 1.09004 * 109.57173 * 62.96243 * 13 12 11 32 32 H 1.09002 * 109.47539 * 300.00069 * 16 14 13 33 33 H 1.09000 * 109.47038 * 75.94361 * 17 16 14 34 34 H 1.08997 * 109.46767 * 315.94093 * 17 16 14 35 35 H 1.08998 * 109.46581 * 284.00255 * 18 17 16 36 36 H 1.09002 * 109.46211 * 164.01735 * 18 17 16 37 37 H 1.08994 * 109.46928 * 7.07231 * 19 18 17 38 38 H 1.08998 * 109.46908 * 127.06704 * 19 18 17 39 39 H 1.09004 * 109.47316 * 195.94217 * 20 19 18 40 40 H 1.09000 * 109.47889 * 315.95954 * 20 19 18 41 41 H 1.09001 * 109.47197 * 44.04240 * 21 20 19 42 42 H 1.09005 * 109.47241 * 164.03276 * 21 20 19 43 43 H 1.08996 * 109.46697 * 232.95193 * 22 21 20 44 44 H 1.08995 * 109.46219 * 352.93480 * 22 21 20 45 45 H 1.08999 * 109.47328 * 75.99202 * 23 22 21 46 46 H 1.08991 * 109.47168 * 196.00172 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6236 -2.5576 0.8877 11 6 2.2457 -3.6629 -0.0015 12 6 1.4736 -4.9844 -0.0634 13 6 0.5804 -4.9833 -1.3078 14 6 -0.3500 -3.7685 -1.2576 15 1 -0.9988 -3.8434 -0.3850 16 6 -1.2039 -3.7270 -2.5264 17 6 -2.0394 -5.0054 -2.6210 18 6 -2.5792 -5.1575 -4.0444 19 6 -1.4684 -4.8424 -5.0481 20 6 -1.8148 -3.5594 -5.8063 21 6 -1.5626 -2.3505 -4.9031 22 6 -2.6896 -2.2381 -3.8746 23 6 -2.1337 -2.5128 -2.4759 24 8 0.4309 -2.5750 -1.1694 25 1 -0.4851 0.8399 -0.0004 26 1 2.8423 -3.6320 0.9103 27 1 2.9013 -3.5831 -0.8686 28 1 0.8559 -5.0879 0.8287 29 1 2.1757 -5.8162 -0.1192 30 1 -0.0141 -5.8966 -1.3304 31 1 1.2008 -4.9303 -2.2025 32 1 -0.5549 -3.6517 -3.3989 33 1 -2.8727 -4.9475 -1.9207 34 1 -1.4168 -5.8654 -2.3747 35 1 -3.4099 -4.4677 -4.1935 36 1 -2.9249 -6.1803 -4.1944 37 1 -0.5263 -4.7074 -4.5169 38 1 -1.3723 -5.6671 -5.7544 39 1 -1.1912 -3.4841 -6.6971 40 1 -2.8647 -3.5821 -6.0985 41 1 -0.6107 -2.4750 -4.3869 42 1 -1.5316 -1.4447 -5.5087 43 1 -3.1119 -1.2338 -3.9069 44 1 -3.4666 -2.9664 -4.1062 45 1 -1.5765 -1.6427 -2.1289 46 1 -2.9572 -2.7140 -1.7908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379846992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = -87.858447 kcal Electronic energy + Delta-G solvation = -22411.925778 eV Core-core repulsion = 19492.671276 eV Total energy + Delta-G solvation = -2919.254502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91145 -39.12784 -35.20772 -34.25111 -34.01589 -33.46032 -31.31361 -28.27675 -27.00482 -26.47394 -24.20471 -23.35399 -22.50101 -21.44485 -20.80836 -19.85305 -18.62619 -17.07699 -16.78955 -16.43099 -16.01336 -15.64585 -15.11688 -14.96996 -14.87810 -14.73580 -14.39617 -14.06899 -13.96806 -13.58247 -13.24687 -12.91342 -12.81360 -12.61972 -12.43700 -12.33062 -12.20744 -11.97807 -11.86381 -11.77933 -11.72947 -11.61770 -11.46452 -11.17901 -10.92129 -10.85542 -10.62063 -10.52454 -10.34140 -9.59978 -8.11869 -6.32034 1.39216 1.42072 1.49277 2.40781 3.04535 3.58767 3.76602 3.86806 4.07658 4.13887 4.17652 4.19818 4.31552 4.36499 4.39447 4.43301 4.47629 4.51240 4.59990 4.60300 4.80918 4.86658 4.88341 4.98031 5.02977 5.05884 5.13476 5.14999 5.16338 5.22530 5.26510 5.31508 5.33661 5.35081 5.39125 5.43790 5.45826 5.55726 5.61021 5.63831 5.78504 5.82673 5.85283 6.25284 6.70107 7.30051 7.44724 8.94896 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.006889 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.292128 B = 4063.733982 C = 5006.053189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.028 3.972 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.219 3.781 10 H -0.029 1.029 11 C -0.137 4.137 12 C -0.117 4.117 13 C -0.138 4.138 14 C 0.080 3.920 15 H 0.011 0.989 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.107 4.107 24 O -0.377 6.377 25 H 0.259 0.741 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.035 0.965 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -11.209 -9.247 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.175 4.175 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.079 0.921 9 C 0.163 3.837 10 H -0.012 1.012 11 C -0.175 4.175 12 C -0.154 4.154 13 C -0.176 4.176 14 C 0.021 3.979 15 H 0.029 0.971 16 C -0.100 4.100 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.145 4.145 24 O -0.296 6.296 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.291 -10.960 -9.375 15.363 hybrid contribution 0.462 1.216 0.808 1.532 sum -4.829 -9.744 -8.567 13.844 Atomic orbital electron populations 1.70166 1.07394 1.27108 1.47963 1.25869 0.95631 1.02646 0.93320 0.85667 0.78510 0.78731 0.79009 1.19682 1.20763 1.19032 1.21379 0.92890 0.91470 1.53390 0.92093 1.19456 0.87353 0.93054 0.83836 1.01192 1.22107 0.98804 0.95814 1.00777 1.21607 0.98736 0.97137 0.97949 1.22196 0.98421 0.98764 0.98180 1.22081 0.92131 0.86758 0.96884 0.97070 1.21555 0.96211 0.95343 0.96883 1.21706 0.98896 0.96192 0.98007 1.21803 0.98430 1.02053 0.93290 1.21814 0.99066 0.97550 0.98111 1.21661 1.01954 0.93724 0.97403 1.21799 0.98846 0.98701 0.97292 1.21781 0.98426 1.01033 0.93923 1.21481 0.97795 0.98214 0.97002 1.88214 1.58327 1.38418 1.44688 0.93192 0.92406 0.93009 0.93005 0.89976 0.89177 0.91925 0.88886 0.92507 0.90911 0.90938 0.90659 0.92281 0.90893 0.91775 0.90770 0.92900 0.92854 0.93570 0.89418 0.94629 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.35 12.84 21.45 0.28 -54.07 16 2 C 0.03 1.65 5.40 84.65 0.46 2.10 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -32.48 8.79 25.60 0.23 -32.26 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.22 11.91 2.50 29.88 0.07 11.98 16 10 H -0.03 -1.78 8.14 -2.38 -0.02 -1.80 16 11 C -0.14 -5.99 5.36 30.68 0.16 -5.83 16 12 C -0.12 -4.09 6.03 30.71 0.19 -3.91 16 13 C -0.14 -4.67 5.04 30.69 0.15 -4.52 16 14 C 0.08 3.32 2.22 30.63 0.07 3.38 16 15 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 16 C -0.08 -2.81 1.39 -10.78 -0.02 -2.83 16 17 C -0.11 -2.85 5.00 30.60 0.15 -2.70 16 18 C -0.12 -2.45 5.48 30.59 0.17 -2.28 16 19 C -0.13 -2.70 5.47 30.59 0.17 -2.53 16 20 C -0.11 -2.37 5.59 30.59 0.17 -2.20 16 21 C -0.13 -3.68 5.47 30.59 0.17 -3.51 16 22 C -0.11 -3.41 5.48 30.59 0.17 -3.25 16 23 C -0.11 -4.03 5.04 30.60 0.15 -3.88 16 24 O -0.38 -20.02 8.54 -148.98 -1.27 -21.30 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 2.45 6.25 -2.39 -0.01 2.44 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.09 3.24 2.83 -2.39 -0.01 3.23 16 33 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16 34 H 0.07 1.72 5.80 -2.39 -0.01 1.71 16 35 H 0.07 1.48 4.69 -2.39 -0.01 1.47 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.48 5.47 -2.39 -0.01 1.47 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.38 7.47 -2.39 -0.02 1.37 16 41 H 0.05 1.82 5.47 -2.39 -0.01 1.81 16 42 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 2.16 4.69 -2.39 -0.01 2.15 16 45 H 0.03 1.73 7.28 -2.39 -0.02 1.71 16 46 H 0.04 1.65 7.82 -2.39 -0.02 1.63 16 Total: -1.00 -65.96 325.85 4.43 -61.53 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.94 Total: 18.89 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 2.46 Total: -52.21 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.28 Total: -54.07 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.27 Total: -21.30 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.96 4.43 -61.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379846992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.333 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds