Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48502 * 109.46997 * 239.99563 * 3 2 1 5 5 H 1.48499 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47296 * 119.99743 * 3 2 1 7 7 C 1.37878 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00360 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46882 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47031 * 180.02562 * 12 11 10 14 14 C 1.46818 * 111.00175 * 314.34422 * 13 12 11 15 15 C 1.53045 * 109.47992 * 173.92518 * 14 13 12 16 16 C 1.53115 * 109.19631 * 59.36834 * 15 14 13 17 17 C 1.53042 * 109.59543 * 302.60341 * 16 15 14 18 18 H 1.09007 * 109.81282 * 176.93053 * 17 16 15 19 19 C 1.52981 * 109.27800 * 297.02038 * 17 16 15 20 20 N 1.46870 * 109.47712 * 179.10505 * 19 17 16 21 21 C 1.46831 * 111.25223 * 298.44003 * 20 19 17 22 22 C 1.53035 * 109.57895 * 61.60266 * 21 20 19 23 23 C 1.46867 * 111.00167 * 189.99913 * 13 12 11 24 24 H 1.08999 * 109.58007 * 64.96540 * 23 13 12 25 25 H 0.96994 * 120.00025 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47067 * 59.99503 * 9 7 2 27 27 H 1.09002 * 109.46552 * 299.99519 * 9 7 2 28 28 H 1.09002 * 109.47204 * 59.99636 * 10 9 7 29 29 H 1.09003 * 109.46872 * 299.99872 * 10 9 7 30 30 H 1.09002 * 109.47300 * 59.99938 * 11 10 9 31 31 H 1.08994 * 109.47583 * 299.99918 * 11 10 9 32 32 H 1.08996 * 109.47313 * 60.00311 * 12 11 10 33 33 H 1.09000 * 109.46933 * 299.99593 * 12 11 10 34 34 H 1.09002 * 109.46839 * 293.92910 * 14 13 12 35 35 H 1.09000 * 109.46911 * 53.92073 * 14 13 12 36 36 H 1.09002 * 109.52092 * 179.27852 * 15 14 13 37 37 H 1.09002 * 109.52017 * 299.39993 * 15 14 13 38 38 H 1.09003 * 109.50519 * 62.31785 * 16 15 14 39 39 H 1.08991 * 109.50703 * 182.40468 * 16 15 14 40 40 H 1.09002 * 109.46962 * 59.10360 * 19 17 16 41 41 H 1.09001 * 109.46807 * 299.10683 * 19 17 16 42 42 H 1.00901 * 111.00081 * 62.58068 * 20 19 17 43 43 H 1.09000 * 109.45359 * 181.63759 * 21 20 19 44 44 H 1.09002 * 109.44972 * 301.59283 * 21 20 19 45 45 H 1.09000 * 109.52024 * 60.66240 * 22 21 20 46 46 H 1.09002 * 109.52115 * 180.77306 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 0.6470 -7.3986 0.9816 15 6 -0.1858 -8.6756 0.8479 16 6 0.7133 -9.8909 1.0910 17 6 1.8809 -9.8717 0.1017 18 1 2.5527 -10.7052 0.3069 19 6 1.3375 -9.9935 -1.3232 20 7 2.4531 -9.9540 -2.2777 21 6 3.1798 -8.6808 -2.1945 22 6 3.7758 -8.5211 -0.7941 23 6 2.6463 -8.5531 0.2405 24 1 3.0670 -8.4787 1.2432 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6242 -2.5566 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8913 32 1 3.1012 -6.0918 0.8918 33 1 3.1013 -6.0927 -0.8882 34 1 1.0621 -7.3393 1.9877 35 1 0.0135 -6.5308 0.7983 36 1 -0.9900 -8.6648 1.5836 37 1 -0.6101 -8.7304 -0.1547 38 1 1.1052 -9.8561 2.1076 39 1 0.1350 -10.8046 0.9550 40 1 0.6574 -9.1658 -1.5247 41 1 0.8025 -10.9373 -1.4285 42 1 3.0758 -10.7356 -2.1387 43 1 3.9812 -8.6714 -2.9333 44 1 2.4936 -7.8575 -2.3928 45 1 4.4715 -9.3372 -0.5990 46 1 4.3034 -7.5695 -0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715023658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = -22.405054 kcal Electronic energy + Delta-G solvation = -21246.993676 eV Core-core repulsion = 18362.870197 eV Total energy + Delta-G solvation = -2884.123479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53387 -36.62633 -35.10031 -33.75223 -32.13809 -30.94557 -29.69089 -28.15034 -25.44009 -24.33589 -23.33758 -23.11672 -21.30785 -20.57034 -19.87120 -18.67582 -16.28642 -16.13665 -15.87614 -15.56154 -14.99534 -14.72955 -14.44597 -14.33253 -13.89167 -13.58699 -13.20943 -12.70462 -12.52836 -12.42508 -12.16808 -11.97914 -11.81207 -11.57297 -11.50219 -11.24067 -11.08242 -10.96391 -10.75388 -10.60802 -10.51919 -10.48474 -10.11216 -9.99878 -9.59029 -9.24010 -9.00492 -8.48889 -8.31539 -8.11054 -5.96748 -3.99031 3.34775 3.39011 3.41550 3.88207 4.22836 4.47789 4.49631 4.61436 4.72440 4.95423 5.02453 5.13442 5.14981 5.27106 5.38357 5.38881 5.41435 5.47020 5.52547 5.59556 5.70454 5.76437 5.76736 5.78205 5.83892 5.88931 5.93317 6.01217 6.11086 6.16932 6.18725 6.28513 6.36141 6.51239 6.81986 6.95738 6.96614 7.11930 7.20708 7.27916 7.34108 7.71509 7.87618 8.04090 8.47039 9.08197 9.64756 11.14578 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032537 B = 0.003563 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.347687 B = 7857.090690 C = 8305.027157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.120 4.120 12 C 0.056 3.944 13 N -0.528 5.528 14 C 0.048 3.952 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.115 4.115 18 H 0.066 0.934 19 C 0.069 3.931 20 N -0.685 5.685 21 C 0.064 3.936 22 C -0.154 4.154 23 C 0.091 3.909 24 H 0.035 0.965 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.331 0.669 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -22.550 0.383 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.158 4.158 12 C -0.071 4.071 13 N -0.253 5.253 14 C -0.080 4.080 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.136 4.136 18 H 0.085 0.915 19 C -0.061 4.061 20 N -0.311 5.311 21 C -0.066 4.066 22 C -0.193 4.193 23 C -0.018 4.018 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.899 -22.287 -0.636 22.484 hybrid contribution 1.420 0.984 1.888 2.559 sum 4.319 -21.303 1.253 21.772 Atomic orbital electron populations 1.69955 1.06041 1.26631 1.50938 1.25026 0.94838 0.99196 0.95399 0.86677 0.79601 0.83236 0.78587 1.20242 1.21287 1.20304 1.21252 0.92970 0.91238 1.50473 0.92851 1.19079 0.94000 0.91335 0.97086 1.21593 0.99079 0.93970 1.00031 1.21818 0.98010 0.93983 1.01959 1.22256 0.96350 0.88173 1.00310 1.61954 1.11240 1.02475 1.49619 1.22219 0.93738 0.98878 0.93151 1.21635 0.97560 0.93907 1.02495 1.21520 0.96528 0.98515 0.98494 1.21860 0.97287 0.96404 0.98045 0.91545 1.22059 0.94032 1.02344 0.87666 1.60644 1.13316 1.04448 1.52720 1.21937 0.97651 0.92921 0.94062 1.22378 0.97133 1.02411 0.97411 1.21575 0.92352 0.91170 0.96702 0.94715 0.92994 0.96618 0.96822 0.93789 0.93430 0.91627 0.92366 0.95447 0.90695 0.95351 0.89288 0.91662 0.90789 0.92602 0.91865 0.89164 0.91744 0.85251 0.91522 0.89358 0.92182 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -2.04 4.46 -26.73 -0.12 -2.16 16 12 C 0.06 0.80 4.40 -3.82 -0.02 0.78 16 13 N -0.53 -6.60 3.28 -226.53 -0.74 -7.34 16 14 C 0.05 0.59 4.85 -3.85 -0.02 0.57 16 15 C -0.12 -1.19 5.75 -26.65 -0.15 -1.34 16 16 C -0.11 -1.01 5.46 -26.65 -0.15 -1.16 16 17 C -0.12 -1.08 2.62 -90.56 -0.24 -1.32 16 18 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 19 C 0.07 0.67 5.42 -3.85 -0.02 0.65 16 20 N -0.68 -6.80 6.86 -113.84 -0.78 -7.59 16 21 C 0.06 0.67 6.40 -3.84 -0.02 0.64 16 22 C -0.15 -1.56 5.13 -26.61 -0.14 -1.69 16 23 C 0.09 1.00 2.05 -67.58 -0.14 0.86 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.99 6.20 -51.93 -0.32 0.67 16 32 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 1.19 5.80 -51.93 -0.30 0.89 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 6.62 -51.93 -0.34 0.43 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.06 6.05 -51.93 -0.31 0.75 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.33 2.77 8.86 -39.29 -0.35 2.43 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.78 6.42 -51.93 -0.33 0.45 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -29.73 338.02 -11.00 -40.73 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.59 Total: -1.26 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.70 Total: -19.95 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.79 Total: -41.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.73 -11.00 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715023658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.328 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds