Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48502 * 109.46997 * 239.99563 * 3 2 1 5 5 H 1.48499 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47296 * 119.99743 * 3 2 1 7 7 C 1.37878 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00360 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46882 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47031 * 180.02562 * 12 11 10 14 14 C 1.46818 * 111.00175 * 314.34422 * 13 12 11 15 15 C 1.53045 * 109.47992 * 173.92518 * 14 13 12 16 16 C 1.53115 * 109.19631 * 59.36834 * 15 14 13 17 17 C 1.53042 * 109.59543 * 302.60341 * 16 15 14 18 18 H 1.09007 * 109.81282 * 176.93053 * 17 16 15 19 19 C 1.52981 * 109.27800 * 297.02038 * 17 16 15 20 20 N 1.46870 * 109.47712 * 179.10505 * 19 17 16 21 21 C 1.46831 * 111.25223 * 298.44003 * 20 19 17 22 22 C 1.53035 * 109.57895 * 61.60266 * 21 20 19 23 23 C 1.46867 * 111.00167 * 189.99913 * 13 12 11 24 24 H 1.08999 * 109.58007 * 64.96540 * 23 13 12 25 25 H 0.96994 * 120.00025 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47067 * 59.99503 * 9 7 2 27 27 H 1.09002 * 109.46552 * 299.99519 * 9 7 2 28 28 H 1.09002 * 109.47204 * 59.99636 * 10 9 7 29 29 H 1.09003 * 109.46872 * 299.99872 * 10 9 7 30 30 H 1.09002 * 109.47300 * 59.99938 * 11 10 9 31 31 H 1.08994 * 109.47583 * 299.99918 * 11 10 9 32 32 H 1.08996 * 109.47313 * 60.00311 * 12 11 10 33 33 H 1.09000 * 109.46933 * 299.99593 * 12 11 10 34 34 H 1.09002 * 109.46839 * 293.92910 * 14 13 12 35 35 H 1.09000 * 109.46911 * 53.92073 * 14 13 12 36 36 H 1.09002 * 109.52092 * 179.27852 * 15 14 13 37 37 H 1.09002 * 109.52017 * 299.39993 * 15 14 13 38 38 H 1.09003 * 109.50519 * 62.31785 * 16 15 14 39 39 H 1.08991 * 109.50703 * 182.40468 * 16 15 14 40 40 H 1.09002 * 109.46962 * 59.10360 * 19 17 16 41 41 H 1.09001 * 109.46807 * 299.10683 * 19 17 16 42 42 H 1.00901 * 111.00081 * 62.58068 * 20 19 17 43 43 H 1.09000 * 109.45359 * 181.63759 * 21 20 19 44 44 H 1.09002 * 109.44972 * 301.59283 * 21 20 19 45 45 H 1.09000 * 109.52024 * 60.66240 * 22 21 20 46 46 H 1.09002 * 109.52115 * 180.77306 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 0.6470 -7.3986 0.9816 15 6 -0.1858 -8.6756 0.8479 16 6 0.7133 -9.8909 1.0910 17 6 1.8809 -9.8717 0.1017 18 1 2.5527 -10.7052 0.3069 19 6 1.3375 -9.9935 -1.3232 20 7 2.4531 -9.9540 -2.2777 21 6 3.1798 -8.6808 -2.1945 22 6 3.7758 -8.5211 -0.7941 23 6 2.6463 -8.5531 0.2405 24 1 3.0670 -8.4787 1.2432 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6242 -2.5566 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8913 32 1 3.1012 -6.0918 0.8918 33 1 3.1013 -6.0927 -0.8882 34 1 1.0621 -7.3393 1.9877 35 1 0.0135 -6.5308 0.7983 36 1 -0.9900 -8.6648 1.5836 37 1 -0.6101 -8.7304 -0.1547 38 1 1.1052 -9.8561 2.1076 39 1 0.1350 -10.8046 0.9550 40 1 0.6574 -9.1658 -1.5247 41 1 0.8025 -10.9373 -1.4285 42 1 3.0758 -10.7356 -2.1387 43 1 3.9812 -8.6714 -2.9333 44 1 2.4936 -7.8575 -2.3928 45 1 4.4715 -9.3372 -0.5990 46 1 4.3034 -7.5695 -0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715023658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = -40.665256 kcal Electronic energy + Delta-G solvation = -21247.785498 eV Core-core repulsion = 18362.870197 eV Total energy + Delta-G solvation = -2884.915301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41753 -37.72878 -36.33953 -35.28193 -33.85112 -31.97043 -30.68685 -29.67791 -26.87698 -25.52301 -24.42989 -24.10787 -22.67272 -21.63467 -21.39486 -19.54140 -18.43531 -17.07011 -16.86735 -16.63121 -16.46216 -16.17218 -15.56067 -15.37194 -14.90879 -14.64151 -14.39567 -14.21167 -13.91382 -13.51895 -13.35730 -13.22473 -13.02082 -12.83680 -12.75756 -12.63919 -12.35433 -12.21834 -12.15144 -12.05564 -11.83161 -11.58374 -11.41090 -11.35835 -11.12043 -10.93453 -10.82130 -10.55937 -9.35953 -9.03629 -8.20663 -6.32456 1.38680 1.42138 1.50137 2.40140 2.88158 3.11950 3.47440 3.66874 3.79624 3.92134 4.03720 4.09441 4.11742 4.27225 4.32286 4.33654 4.44473 4.52493 4.58316 4.60951 4.67390 4.74041 4.81442 4.85893 4.88681 4.95677 4.98379 5.02566 5.08457 5.10763 5.19203 5.20881 5.25431 5.27191 5.33133 5.44428 5.47116 5.52590 5.75453 5.85007 6.12589 6.19246 6.22082 6.26203 6.66138 6.84623 7.36918 8.91050 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032537 B = 0.003563 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.347687 B = 7857.090690 C = 8305.027157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.068 3.932 13 N -0.529 5.529 14 C 0.046 3.954 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.109 4.109 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.690 5.690 21 C 0.069 3.931 22 C -0.149 4.149 23 C 0.087 3.913 24 H 0.028 0.972 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.343 0.657 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -23.845 0.490 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.145 4.145 12 C -0.059 4.059 13 N -0.254 5.254 14 C -0.082 4.082 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.130 4.130 18 H 0.101 0.899 19 C -0.057 4.057 20 N -0.318 5.318 21 C -0.061 4.061 22 C -0.188 4.188 23 C -0.021 4.021 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.006 0.994 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.304 -23.607 -0.528 24.002 hybrid contribution 0.939 1.369 1.846 2.483 sum 5.243 -22.238 1.318 22.886 Atomic orbital electron populations 1.70096 1.07855 1.27856 1.51612 1.26012 0.95789 1.03443 0.94653 0.85494 0.78292 0.77998 0.79230 1.19087 1.20716 1.19138 1.21711 0.93549 0.92539 1.50694 0.92234 1.18998 0.94443 0.93255 0.94528 1.21394 0.97966 0.93705 1.00316 1.21624 0.98080 0.93440 1.01355 1.22033 0.95408 0.88048 1.00442 1.61965 1.11473 1.02155 1.49835 1.22225 0.93692 0.99558 0.92723 1.21604 0.97688 0.93275 1.02605 1.21506 0.96290 0.98532 0.98350 1.21840 0.97486 0.95749 0.97887 0.89934 1.21986 0.93745 1.02130 0.87808 1.60600 1.13614 1.04588 1.52957 1.21825 0.97302 0.92473 0.94523 1.22347 0.96952 1.02693 0.96858 1.21686 0.92556 0.91248 0.96604 0.95396 0.92747 0.99247 0.99358 0.93438 0.93003 0.92586 0.92703 0.95538 0.90297 0.95870 0.91147 0.90681 0.91196 0.92542 0.90047 0.91393 0.90333 0.83867 0.90624 0.91905 0.90423 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C -0.11 -3.75 4.46 30.59 0.14 -3.61 16 12 C 0.07 1.93 4.40 86.30 0.38 2.31 16 13 N -0.53 -13.07 3.28 -870.61 -2.85 -15.92 16 14 C 0.05 1.12 4.85 86.33 0.42 1.54 16 15 C -0.11 -2.18 5.75 30.65 0.18 -2.00 16 16 C -0.11 -1.71 5.46 30.65 0.17 -1.54 16 17 C -0.11 -1.80 2.62 -10.75 -0.03 -1.83 16 18 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 19 C 0.07 1.29 5.42 86.30 0.47 1.76 16 20 N -0.69 -12.36 6.86 -514.09 -3.53 -15.89 16 21 C 0.07 1.35 6.40 86.33 0.55 1.90 16 22 C -0.15 -2.76 5.13 30.67 0.16 -2.60 16 23 C 0.09 1.80 2.05 45.02 0.09 1.89 16 24 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.95 6.20 -2.39 -0.01 1.93 16 32 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.08 2.18 6.77 -2.39 -0.02 2.17 16 34 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 1.96 5.80 -2.39 -0.01 1.95 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.41 6.62 -2.39 -0.02 1.39 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.54 6.05 -2.39 -0.01 1.52 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.34 4.81 8.86 -89.69 -0.79 4.02 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.30 6.42 -2.39 -0.02 1.29 16 Total: -1.00 -64.41 338.02 -0.41 -64.82 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.13 Total: 13.88 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 3.52 Total: -36.04 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -6.09 Total: -89.67 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.41 -0.41 -64.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715023658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.156 kcal (2) G-P(sol) polarization free energy of solvation -64.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds